Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03438 and MPMX19_03439 overlap by 4 nucleotides MPMX19_03439 and MPMX19_03440 are separated by 25 nucleotides MPMX19_03440 and MPMX19_03441 are separated by 91 nucleotides
MPMX19_03438: MPMX19_03438 - hypothetical protein, at 833,686 to 834,279
_03438
MPMX19_03439: MPMX19_03439 - hypothetical protein, at 834,276 to 834,860
_03439
MPMX19_03440: MPMX19_03440 - hypothetical protein, at 834,886 to 835,839
_03440
MPMX19_03441: MPMX19_03441 - hypothetical protein, at 835,931 to 837,115
_03441
Position (kb) 834
835
836 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 834.013 kb on + strand, within MPMX19_03438 at 834.013 kb on + strand, within MPMX19_03438 at 834.013 kb on + strand, within MPMX19_03438 at 834.013 kb on + strand, within MPMX19_03438 at 834.013 kb on + strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.130 kb on + strand, within MPMX19_03438 at 834.130 kb on + strand, within MPMX19_03438 at 834.130 kb on + strand, within MPMX19_03438 at 834.131 kb on - strand, within MPMX19_03438 at 834.131 kb on - strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.212 kb on - strand, within MPMX19_03438 at 834.212 kb on - strand, within MPMX19_03438 at 834.212 kb on - strand, within MPMX19_03438 at 834.220 kb on + strand at 834.220 kb on + strand at 834.221 kb on - strand at 834.221 kb on - strand at 834.221 kb on - strand at 834.221 kb on - strand at 834.290 kb on + strand at 834.290 kb on + strand at 834.290 kb on + strand at 834.290 kb on + strand at 834.290 kb on + strand at 834.291 kb on - strand at 834.291 kb on - strand at 834.291 kb on - strand at 834.291 kb on - strand at 834.291 kb on - strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.294 kb on - strand at 834.294 kb on - strand at 834.411 kb on + strand, within MPMX19_03439 at 834.412 kb on - strand, within MPMX19_03439 at 834.412 kb on - strand, within MPMX19_03439 at 834.412 kb on - strand, within MPMX19_03439 at 834.825 kb on + strand at 834.825 kb on + strand at 834.825 kb on + strand at 834.825 kb on + strand at 834.825 kb on + strand at 834.825 kb on + strand at 834.825 kb on + strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.891 kb on + strand at 834.891 kb on + strand at 834.891 kb on + strand at 834.891 kb on + strand at 834.892 kb on - strand at 834.892 kb on - strand at 834.892 kb on - strand at 834.892 kb on - strand at 834.892 kb on - strand at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.992 kb on - strand, within MPMX19_03440 at 834.992 kb on - strand, within MPMX19_03440 at 834.992 kb on - strand, within MPMX19_03440 at 834.992 kb on - strand, within MPMX19_03440 at 834.992 kb on - strand, within MPMX19_03440 at 834.992 kb on - strand, within MPMX19_03440 at 835.048 kb on + strand, within MPMX19_03440 at 835.048 kb on + strand, within MPMX19_03440 at 835.048 kb on + strand, within MPMX19_03440 at 835.048 kb on + strand, within MPMX19_03440 at 835.048 kb on + strand, within MPMX19_03440 at 835.048 kb on + strand, within MPMX19_03440 at 835.048 kb on + strand, within MPMX19_03440 at 835.049 kb on - strand, within MPMX19_03440 at 835.049 kb on - strand, within MPMX19_03440 at 835.049 kb on - strand, within MPMX19_03440 at 835.049 kb on - strand, within MPMX19_03440 at 835.049 kb on - strand, within MPMX19_03440 at 835.165 kb on + strand, within MPMX19_03440 at 835.165 kb on + strand, within MPMX19_03440 at 835.166 kb on - strand, within MPMX19_03440 at 835.166 kb on - strand, within MPMX19_03440 at 835.166 kb on - strand, within MPMX19_03440 at 835.166 kb on - strand, within MPMX19_03440 at 835.260 kb on + strand, within MPMX19_03440 at 835.261 kb on - strand, within MPMX19_03440 at 835.261 kb on - strand, within MPMX19_03440 at 835.288 kb on + strand, within MPMX19_03440 at 835.288 kb on + strand, within MPMX19_03440 at 835.288 kb on + strand, within MPMX19_03440 at 835.288 kb on + strand, within MPMX19_03440 at 835.288 kb on + strand, within MPMX19_03440 at 835.288 kb on + strand, within MPMX19_03440 at 835.288 kb on + strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.342 kb on + strand, within MPMX19_03440 at 835.384 kb on + strand, within MPMX19_03440 at 835.384 kb on + strand, within MPMX19_03440 at 835.384 kb on + strand, within MPMX19_03440 at 835.385 kb on - strand, within MPMX19_03440 at 835.385 kb on - strand, within MPMX19_03440 at 835.385 kb on - strand, within MPMX19_03440 at 835.385 kb on - strand, within MPMX19_03440 at 835.396 kb on + strand, within MPMX19_03440 at 835.396 kb on + strand, within MPMX19_03440 at 835.396 kb on + strand, within MPMX19_03440 at 835.397 kb on - strand, within MPMX19_03440 at 835.397 kb on - strand, within MPMX19_03440 at 835.397 kb on - strand, within MPMX19_03440 at 835.397 kb on - strand, within MPMX19_03440 at 835.487 kb on - strand, within MPMX19_03440 at 835.487 kb on - strand, within MPMX19_03440 at 835.487 kb on - strand, within MPMX19_03440 at 835.487 kb on - strand, within MPMX19_03440 at 835.615 kb on + strand, within MPMX19_03440 at 835.616 kb on - strand, within MPMX19_03440 at 835.616 kb on - strand, within MPMX19_03440 at 835.616 kb on - strand, within MPMX19_03440 at 835.616 kb on - strand, within MPMX19_03440 at 835.616 kb on - strand, within MPMX19_03440 at 835.616 kb on - strand, within MPMX19_03440 at 835.738 kb on + strand, within MPMX19_03440 at 835.739 kb on - strand, within MPMX19_03440 at 835.739 kb on - strand, within MPMX19_03440 at 835.739 kb on - strand, within MPMX19_03440 at 835.804 kb on + strand at 835.804 kb on + strand at 835.804 kb on + strand at 835.805 kb on - strand at 835.805 kb on - strand at 835.805 kb on - strand at 835.837 kb on + strand at 835.916 kb on - strand at 835.918 kb on + strand at 835.918 kb on + strand at 835.918 kb on + strand at 835.918 kb on + strand at 835.918 kb on + strand at 835.918 kb on + strand at 835.919 kb on - strand at 835.929 kb on + strand at 835.930 kb on - strand at 835.930 kb on - strand at 836.185 kb on + strand, within MPMX19_03441 at 836.185 kb on + strand, within MPMX19_03441 at 836.185 kb on + strand, within MPMX19_03441 at 836.186 kb on - strand, within MPMX19_03441 at 836.186 kb on - strand, within MPMX19_03441 at 836.186 kb on - strand, within MPMX19_03441 at 836.186 kb on - strand, within MPMX19_03441 at 836.186 kb on - strand, within MPMX19_03441 at 836.186 kb on - strand, within MPMX19_03441 at 836.724 kb on + strand, within MPMX19_03441 at 836.724 kb on + strand, within MPMX19_03441 at 836.725 kb on - strand, within MPMX19_03441 at 836.725 kb on - strand, within MPMX19_03441 at 836.725 kb on - strand, within MPMX19_03441 at 836.725 kb on - strand, within MPMX19_03441
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 834,013 + MPMX19_03438 0.55 -1.3 834,013 + MPMX19_03438 0.55 -1.9 834,013 + MPMX19_03438 0.55 +0.3 834,013 + MPMX19_03438 0.55 -0.1 834,013 + MPMX19_03438 0.55 +0.7 834,014 - MPMX19_03438 0.55 -0.2 834,014 - MPMX19_03438 0.55 +0.2 834,014 - MPMX19_03438 0.55 -0.3 834,014 - MPMX19_03438 0.55 -1.3 834,014 - MPMX19_03438 0.55 +0.2 834,014 - MPMX19_03438 0.55 +0.7 834,014 - MPMX19_03438 0.55 -1.1 834,130 + MPMX19_03438 0.75 +0.6 834,130 + MPMX19_03438 0.75 -2.1 834,130 + MPMX19_03438 0.75 -1.4 834,131 - MPMX19_03438 0.75 -0.0 834,131 - MPMX19_03438 0.75 -3.3 834,211 + MPMX19_03438 0.88 -1.3 834,211 + MPMX19_03438 0.88 -2.1 834,211 + MPMX19_03438 0.88 -0.0 834,211 + MPMX19_03438 0.88 +0.6 834,211 + MPMX19_03438 0.88 +0.2 834,211 + MPMX19_03438 0.88 +0.8 834,211 + MPMX19_03438 0.88 -0.4 834,211 + MPMX19_03438 0.88 -1.3 834,211 + MPMX19_03438 0.88 +1.0 834,211 + MPMX19_03438 0.88 -0.4 834,212 - MPMX19_03438 0.89 +0.3 834,212 - MPMX19_03438 0.89 -2.8 834,212 - MPMX19_03438 0.89 -0.8 834,220 + -0.9 834,220 + -2.3 834,221 - -0.1 834,221 - +0.2 834,221 - +0.2 834,221 - -0.7 834,290 + -2.3 834,290 + -0.0 834,290 + -0.3 834,290 + +1.6 834,290 + -0.9 834,291 - -0.3 834,291 - -0.8 834,291 - -0.8 834,291 - +0.0 834,291 - -0.9 834,293 + -2.3 834,293 + +0.8 834,293 + -0.0 834,293 + -0.8 834,293 + -2.1 834,293 + -0.3 834,293 + -0.4 834,293 + -1.0 834,293 + -0.4 834,294 - -0.1 834,294 - -1.3 834,411 + MPMX19_03439 0.23 +0.2 834,412 - MPMX19_03439 0.23 -0.8 834,412 - MPMX19_03439 0.23 -0.3 834,412 - MPMX19_03439 0.23 -0.0 834,825 + -1.5 834,825 + -0.6 834,825 + -0.1 834,825 + +0.3 834,825 + +0.7 834,825 + -0.1 834,825 + +0.3 834,826 - -1.8 834,826 - +0.8 834,826 - +0.7 834,826 - -1.6 834,826 - -0.6 834,826 - -1.4 834,826 - +0.1 834,826 - +0.1 834,826 - -0.0 834,826 - -0.3 834,826 - -2.5 834,826 - -0.4 834,826 - -0.7 834,891 + +0.2 834,891 + +0.7 834,891 + +0.1 834,891 + +0.1 834,892 - -1.4 834,892 - +0.1 834,892 - -0.7 834,892 - +0.9 834,892 - +0.7 834,991 + MPMX19_03440 0.11 +1.4 834,991 + MPMX19_03440 0.11 -1.0 834,991 + MPMX19_03440 0.11 +1.1 834,991 + MPMX19_03440 0.11 +0.0 834,991 + MPMX19_03440 0.11 +0.3 834,991 + MPMX19_03440 0.11 +0.7 834,991 + MPMX19_03440 0.11 -1.4 834,991 + MPMX19_03440 0.11 +0.0 834,991 + MPMX19_03440 0.11 +0.6 834,991 + MPMX19_03440 0.11 +0.7 834,991 + MPMX19_03440 0.11 -0.3 834,991 + MPMX19_03440 0.11 +1.3 834,991 + MPMX19_03440 0.11 +0.1 834,991 + MPMX19_03440 0.11 +1.3 834,991 + MPMX19_03440 0.11 +0.6 834,991 + MPMX19_03440 0.11 -0.2 834,992 - MPMX19_03440 0.11 -1.6 834,992 - MPMX19_03440 0.11 -1.5 834,992 - MPMX19_03440 0.11 -1.7 834,992 - MPMX19_03440 0.11 -0.1 834,992 - MPMX19_03440 0.11 +1.0 834,992 - MPMX19_03440 0.11 +0.7 835,048 + MPMX19_03440 0.17 -0.7 835,048 + MPMX19_03440 0.17 -0.1 835,048 + MPMX19_03440 0.17 -1.3 835,048 + MPMX19_03440 0.17 -1.4 835,048 + MPMX19_03440 0.17 +0.6 835,048 + MPMX19_03440 0.17 -1.0 835,048 + MPMX19_03440 0.17 -0.2 835,049 - MPMX19_03440 0.17 -1.0 835,049 - MPMX19_03440 0.17 +0.2 835,049 - MPMX19_03440 0.17 -0.3 835,049 - MPMX19_03440 0.17 -0.9 835,049 - MPMX19_03440 0.17 -1.0 835,165 + MPMX19_03440 0.29 -0.3 835,165 + MPMX19_03440 0.29 -0.4 835,166 - MPMX19_03440 0.29 -0.6 835,166 - MPMX19_03440 0.29 +1.6 835,166 - MPMX19_03440 0.29 -1.3 835,166 - MPMX19_03440 0.29 -1.4 835,260 + MPMX19_03440 0.39 -0.0 835,261 - MPMX19_03440 0.39 +1.0 835,261 - MPMX19_03440 0.39 +0.8 835,288 + MPMX19_03440 0.42 -0.6 835,288 + MPMX19_03440 0.42 -0.2 835,288 + MPMX19_03440 0.42 -0.0 835,288 + MPMX19_03440 0.42 -1.5 835,288 + MPMX19_03440 0.42 -0.8 835,288 + MPMX19_03440 0.42 -0.8 835,288 + MPMX19_03440 0.42 -0.0 835,289 - MPMX19_03440 0.42 -1.9 835,289 - MPMX19_03440 0.42 -0.6 835,289 - MPMX19_03440 0.42 +1.4 835,289 - MPMX19_03440 0.42 +1.2 835,289 - MPMX19_03440 0.42 -0.8 835,289 - MPMX19_03440 0.42 -0.9 835,289 - MPMX19_03440 0.42 -0.6 835,289 - MPMX19_03440 0.42 -0.7 835,289 - MPMX19_03440 0.42 -0.8 835,289 - MPMX19_03440 0.42 -2.3 835,289 - MPMX19_03440 0.42 -0.6 835,289 - MPMX19_03440 0.42 -0.6 835,342 + MPMX19_03440 0.48 -1.4 835,384 + MPMX19_03440 0.52 -0.1 835,384 + MPMX19_03440 0.52 -2.0 835,384 + MPMX19_03440 0.52 -0.6 835,385 - MPMX19_03440 0.52 -2.3 835,385 - MPMX19_03440 0.52 +0.2 835,385 - MPMX19_03440 0.52 -1.0 835,385 - MPMX19_03440 0.52 -0.9 835,396 + MPMX19_03440 0.53 -0.8 835,396 + MPMX19_03440 0.53 -0.3 835,396 + MPMX19_03440 0.53 -1.2 835,397 - MPMX19_03440 0.54 -2.0 835,397 - MPMX19_03440 0.54 +1.6 835,397 - MPMX19_03440 0.54 -1.1 835,397 - MPMX19_03440 0.54 -1.0 835,487 - MPMX19_03440 0.63 -0.7 835,487 - MPMX19_03440 0.63 -1.6 835,487 - MPMX19_03440 0.63 -0.8 835,487 - MPMX19_03440 0.63 +0.2 835,615 + MPMX19_03440 0.76 -0.4 835,616 - MPMX19_03440 0.77 +0.6 835,616 - MPMX19_03440 0.77 -1.1 835,616 - MPMX19_03440 0.77 +1.0 835,616 - MPMX19_03440 0.77 -0.8 835,616 - MPMX19_03440 0.77 -0.8 835,616 - MPMX19_03440 0.77 +0.2 835,738 + MPMX19_03440 0.89 +0.3 835,739 - MPMX19_03440 0.89 -0.2 835,739 - MPMX19_03440 0.89 +0.7 835,739 - MPMX19_03440 0.89 +0.3 835,804 + -1.1 835,804 + +0.2 835,804 + +0.8 835,805 - -1.4 835,805 - +0.1 835,805 - -1.0 835,837 + -0.7 835,916 - -0.7 835,918 + -0.3 835,918 + -0.4 835,918 + -0.6 835,918 + +0.2 835,918 + +0.5 835,918 + +1.0 835,919 - -0.6 835,929 + -0.6 835,930 - -0.6 835,930 - +0.6 836,185 + MPMX19_03441 0.21 -1.3 836,185 + MPMX19_03441 0.21 -0.3 836,185 + MPMX19_03441 0.21 -0.0 836,186 - MPMX19_03441 0.22 +0.1 836,186 - MPMX19_03441 0.22 +1.8 836,186 - MPMX19_03441 0.22 +0.5 836,186 - MPMX19_03441 0.22 -0.3 836,186 - MPMX19_03441 0.22 -0.9 836,186 - MPMX19_03441 0.22 -0.8 836,724 + MPMX19_03441 0.67 -0.6 836,724 + MPMX19_03441 0.67 -0.4 836,725 - MPMX19_03441 0.67 +2.1 836,725 - MPMX19_03441 0.67 +1.0 836,725 - MPMX19_03441 0.67 -1.4 836,725 - MPMX19_03441 0.67 -0.0
Or see this region's nucleotide sequence