Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03427

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03426 and MPMX19_03427 are separated by 159 nucleotidesMPMX19_03427 and MPMX19_03428 are separated by 3 nucleotides MPMX19_03426: MPMX19_03426 - Trans-aconitate 2-methyltransferase, at 816,992 to 818,419 _03426 MPMX19_03427: MPMX19_03427 - hypothetical protein, at 818,579 to 819,355 _03427 MPMX19_03428: MPMX19_03428 - hypothetical protein, at 819,359 to 821,287 _03428 Position (kb) 818 819 820Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 817.593 kb on + strand, within MPMX19_03426at 817.593 kb on + strand, within MPMX19_03426at 817.594 kb on - strand, within MPMX19_03426at 817.594 kb on - strand, within MPMX19_03426at 817.617 kb on + strand, within MPMX19_03426at 817.617 kb on + strand, within MPMX19_03426at 817.617 kb on + strand, within MPMX19_03426at 817.617 kb on + strand, within MPMX19_03426at 817.617 kb on + strand, within MPMX19_03426at 817.617 kb on + strand, within MPMX19_03426at 817.617 kb on + strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.714 kb on - strand, within MPMX19_03426at 817.952 kb on + strand, within MPMX19_03426at 817.952 kb on + strand, within MPMX19_03426at 817.953 kb on - strand, within MPMX19_03426at 817.953 kb on - strand, within MPMX19_03426at 818.092 kb on - strand, within MPMX19_03426at 818.181 kb on + strand, within MPMX19_03426at 818.181 kb on + strand, within MPMX19_03426at 818.181 kb on + strand, within MPMX19_03426at 818.181 kb on + strand, within MPMX19_03426at 818.181 kb on + strand, within MPMX19_03426at 818.181 kb on + strand, within MPMX19_03426at 818.182 kb on - strand, within MPMX19_03426at 818.182 kb on - strand, within MPMX19_03426at 818.182 kb on - strand, within MPMX19_03426at 818.182 kb on - strand, within MPMX19_03426at 818.398 kb on + strandat 818.399 kb on - strandat 818.399 kb on - strandat 818.445 kb on + strandat 818.446 kb on - strandat 818.455 kb on + strandat 818.455 kb on + strandat 818.455 kb on + strandat 818.455 kb on + strandat 818.455 kb on + strandat 818.456 kb on - strandat 818.557 kb on + strandat 818.557 kb on + strandat 818.558 kb on - strandat 818.558 kb on - strandat 819.183 kb on + strand, within MPMX19_03427at 819.183 kb on + strand, within MPMX19_03427at 819.184 kb on - strand, within MPMX19_03427at 819.184 kb on - strand, within MPMX19_03427at 819.184 kb on - strand, within MPMX19_03427at 819.184 kb on - strand, within MPMX19_03427at 819.194 kb on + strand, within MPMX19_03427at 819.194 kb on + strand, within MPMX19_03427at 819.194 kb on + strand, within MPMX19_03427at 819.194 kb on + strand, within MPMX19_03427at 819.194 kb on + strand, within MPMX19_03427at 819.195 kb on - strand, within MPMX19_03427at 819.195 kb on - strand, within MPMX19_03427at 819.195 kb on - strand, within MPMX19_03427at 819.353 kb on + strandat 819.354 kb on - strandat 819.354 kb on - strandat 819.587 kb on + strand, within MPMX19_03428at 819.587 kb on + strand, within MPMX19_03428at 819.587 kb on + strand, within MPMX19_03428at 819.587 kb on + strand, within MPMX19_03428at 819.587 kb on + strand, within MPMX19_03428at 819.756 kb on - strand, within MPMX19_03428at 819.756 kb on - strand, within MPMX19_03428at 819.901 kb on + strand, within MPMX19_03428at 819.901 kb on + strand, within MPMX19_03428at 819.901 kb on + strand, within MPMX19_03428at 819.901 kb on + strand, within MPMX19_03428at 819.901 kb on + strand, within MPMX19_03428at 819.902 kb on - strand, within MPMX19_03428at 819.902 kb on - strand, within MPMX19_03428at 819.938 kb on + strand, within MPMX19_03428at 819.977 kb on + strand, within MPMX19_03428at 819.977 kb on + strand, within MPMX19_03428at 819.978 kb on - strand, within MPMX19_03428at 819.978 kb on - strand, within MPMX19_03428at 819.978 kb on - strand, within MPMX19_03428at 819.978 kb on - strand, within MPMX19_03428at 819.978 kb on - strand, within MPMX19_03428at 820.085 kb on + strand, within MPMX19_03428at 820.085 kb on + strand, within MPMX19_03428at 820.085 kb on + strand, within MPMX19_03428at 820.086 kb on - strand, within MPMX19_03428at 820.086 kb on - strand, within MPMX19_03428at 820.090 kb on + strand, within MPMX19_03428at 820.090 kb on + strand, within MPMX19_03428at 820.090 kb on + strand, within MPMX19_03428at 820.091 kb on - strand, within MPMX19_03428

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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817,593 + MPMX19_03426 0.42 -0.8
817,593 + MPMX19_03426 0.42 -2.3
817,594 - MPMX19_03426 0.42 +0.6
817,594 - MPMX19_03426 0.42 -0.8
817,617 + MPMX19_03426 0.44 +1.6
817,617 + MPMX19_03426 0.44 +0.7
817,617 + MPMX19_03426 0.44 -1.0
817,617 + MPMX19_03426 0.44 -0.4
817,617 + MPMX19_03426 0.44 +0.4
817,617 + MPMX19_03426 0.44 -0.9
817,617 + MPMX19_03426 0.44 -1.4
817,618 - MPMX19_03426 0.44 -0.2
817,618 - MPMX19_03426 0.44 -0.9
817,618 - MPMX19_03426 0.44 -0.0
817,618 - MPMX19_03426 0.44 -0.5
817,618 - MPMX19_03426 0.44 -0.9
817,618 - MPMX19_03426 0.44 -0.6
817,618 - MPMX19_03426 0.44 +0.2
817,618 - MPMX19_03426 0.44 -0.7
817,618 - MPMX19_03426 0.44 -0.2
817,618 - MPMX19_03426 0.44 +0.4
817,618 - MPMX19_03426 0.44 -0.4
817,618 - MPMX19_03426 0.44 -1.2
817,618 - MPMX19_03426 0.44 -1.0
817,714 - MPMX19_03426 0.51 +0.7
817,952 + MPMX19_03426 0.67 -0.1
817,952 + MPMX19_03426 0.67 -1.2
817,953 - MPMX19_03426 0.67 -0.4
817,953 - MPMX19_03426 0.67 -0.2
818,092 - MPMX19_03426 0.77 -0.6
818,181 + MPMX19_03426 0.83 +1.1
818,181 + MPMX19_03426 0.83 +1.5
818,181 + MPMX19_03426 0.83 +0.6
818,181 + MPMX19_03426 0.83 -1.9
818,181 + MPMX19_03426 0.83 -1.0
818,181 + MPMX19_03426 0.83 +0.1
818,182 - MPMX19_03426 0.83 -1.1
818,182 - MPMX19_03426 0.83 -1.0
818,182 - MPMX19_03426 0.83 -0.4
818,182 - MPMX19_03426 0.83 +0.2
818,398 + +0.2
818,399 - -0.8
818,399 - -0.3
818,445 + +0.3
818,446 - +1.1
818,455 + -0.2
818,455 + -1.1
818,455 + -2.8
818,455 + -0.5
818,455 + +0.2
818,456 - -2.0
818,557 + +0.6
818,557 + +0.2
818,558 - +0.5
818,558 - -1.3
819,183 + MPMX19_03427 0.78 +0.1
819,183 + MPMX19_03427 0.78 -0.6
819,184 - MPMX19_03427 0.78 -1.8
819,184 - MPMX19_03427 0.78 -0.6
819,184 - MPMX19_03427 0.78 +0.4
819,184 - MPMX19_03427 0.78 +0.4
819,194 + MPMX19_03427 0.79 -0.7
819,194 + MPMX19_03427 0.79 +0.7
819,194 + MPMX19_03427 0.79 -2.2
819,194 + MPMX19_03427 0.79 +0.2
819,194 + MPMX19_03427 0.79 -1.3
819,195 - MPMX19_03427 0.79 -0.4
819,195 - MPMX19_03427 0.79 -0.9
819,195 - MPMX19_03427 0.79 -1.9
819,353 + -1.4
819,354 - +0.2
819,354 - +0.4
819,587 + MPMX19_03428 0.12 -1.8
819,587 + MPMX19_03428 0.12 -0.8
819,587 + MPMX19_03428 0.12 +0.4
819,587 + MPMX19_03428 0.12 -1.8
819,587 + MPMX19_03428 0.12 +1.0
819,756 - MPMX19_03428 0.21 -0.6
819,756 - MPMX19_03428 0.21 -1.0
819,901 + MPMX19_03428 0.28 -0.6
819,901 + MPMX19_03428 0.28 +0.2
819,901 + MPMX19_03428 0.28 -0.8
819,901 + MPMX19_03428 0.28 -1.1
819,901 + MPMX19_03428 0.28 -1.3
819,902 - MPMX19_03428 0.28 +0.8
819,902 - MPMX19_03428 0.28 -0.4
819,938 + MPMX19_03428 0.30 -0.3
819,977 + MPMX19_03428 0.32 +1.2
819,977 + MPMX19_03428 0.32 -0.3
819,978 - MPMX19_03428 0.32 -0.0
819,978 - MPMX19_03428 0.32 +0.1
819,978 - MPMX19_03428 0.32 -1.4
819,978 - MPMX19_03428 0.32 -0.9
819,978 - MPMX19_03428 0.32 -0.0
820,085 + MPMX19_03428 0.38 -0.9
820,085 + MPMX19_03428 0.38 -0.6
820,085 + MPMX19_03428 0.38 +2.1
820,086 - MPMX19_03428 0.38 -0.3
820,086 - MPMX19_03428 0.38 -1.8
820,090 + MPMX19_03428 0.38 -1.3
820,090 + MPMX19_03428 0.38 -0.6
820,090 + MPMX19_03428 0.38 -0.9
820,091 - MPMX19_03428 0.38 +1.1

Or see this region's nucleotide sequence