Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03424

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03422 and MPMX19_03423 are separated by 46 nucleotidesMPMX19_03423 and MPMX19_03424 are separated by 206 nucleotidesMPMX19_03424 and MPMX19_03425 are separated by 16 nucleotidesMPMX19_03425 and MPMX19_03426 are separated by 12 nucleotides MPMX19_03422: MPMX19_03422 - hypothetical protein, at 813,721 to 815,190 _03422 MPMX19_03423: MPMX19_03423 - hypothetical protein, at 815,237 to 815,779 _03423 MPMX19_03424: MPMX19_03424 - hypothetical protein, at 815,986 to 816,651 _03424 MPMX19_03425: MPMX19_03425 - hypothetical protein, at 816,668 to 816,979 _03425 MPMX19_03426: MPMX19_03426 - Trans-aconitate 2-methyltransferase, at 816,992 to 818,419 _03426 Position (kb) 815 816 817Strain fitness (log2 ratio) -3 -2 -1 0 1at 815.090 kb on + strandat 815.185 kb on - strandat 815.217 kb on + strandat 815.718 kb on + strand, within MPMX19_03423at 815.718 kb on + strand, within MPMX19_03423at 815.718 kb on + strand, within MPMX19_03423at 815.718 kb on + strand, within MPMX19_03423at 815.718 kb on + strand, within MPMX19_03423at 815.718 kb on + strand, within MPMX19_03423at 815.719 kb on - strand, within MPMX19_03423at 815.719 kb on - strand, within MPMX19_03423at 815.719 kb on - strand, within MPMX19_03423at 815.719 kb on - strand, within MPMX19_03423at 815.719 kb on - strand, within MPMX19_03423at 815.719 kb on - strand, within MPMX19_03423at 815.860 kb on + strandat 815.873 kb on + strandat 815.873 kb on + strandat 815.873 kb on + strandat 815.874 kb on - strandat 815.902 kb on - strandat 815.921 kb on + strandat 815.921 kb on + strandat 815.921 kb on + strandat 815.921 kb on + strandat 815.921 kb on + strandat 815.921 kb on + strandat 815.922 kb on - strandat 815.922 kb on - strandat 815.922 kb on - strandat 815.922 kb on - strandat 815.922 kb on - strandat 815.922 kb on - strandat 815.922 kb on - strandat 815.924 kb on + strandat 815.987 kb on + strandat 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.156 kb on - strand, within MPMX19_03424at 816.156 kb on - strand, within MPMX19_03424at 816.156 kb on - strand, within MPMX19_03424at 816.156 kb on - strand, within MPMX19_03424at 816.156 kb on - strand, within MPMX19_03424at 816.156 kb on - strand, within MPMX19_03424at 816.156 kb on - strand, within MPMX19_03424at 816.156 kb on - strand, within MPMX19_03424at 816.447 kb on - strand, within MPMX19_03424at 816.662 kb on + strandat 816.662 kb on + strandat 816.662 kb on + strandat 816.662 kb on + strandat 816.662 kb on + strandat 816.663 kb on - strandat 816.663 kb on - strandat 816.663 kb on - strandat 816.834 kb on + strand, within MPMX19_03425at 816.835 kb on - strand, within MPMX19_03425at 816.835 kb on - strand, within MPMX19_03425at 817.033 kb on - strandat 817.033 kb on - strandat 817.033 kb on - strandat 817.033 kb on - strandat 817.140 kb on + strand, within MPMX19_03426at 817.140 kb on + strand, within MPMX19_03426at 817.140 kb on + strand, within MPMX19_03426at 817.140 kb on + strand, within MPMX19_03426at 817.141 kb on - strand, within MPMX19_03426at 817.263 kb on + strand, within MPMX19_03426at 817.263 kb on + strand, within MPMX19_03426at 817.263 kb on + strand, within MPMX19_03426at 817.263 kb on + strand, within MPMX19_03426at 817.263 kb on + strand, within MPMX19_03426at 817.264 kb on - strand, within MPMX19_03426at 817.264 kb on - strand, within MPMX19_03426at 817.264 kb on - strand, within MPMX19_03426at 817.271 kb on + strand, within MPMX19_03426at 817.271 kb on + strand, within MPMX19_03426at 817.271 kb on + strand, within MPMX19_03426at 817.271 kb on + strand, within MPMX19_03426at 817.271 kb on + strand, within MPMX19_03426at 817.271 kb on + strand, within MPMX19_03426at 817.271 kb on + strand, within MPMX19_03426at 817.271 kb on + strand, within MPMX19_03426at 817.272 kb on - strand, within MPMX19_03426at 817.272 kb on - strand, within MPMX19_03426at 817.272 kb on - strand, within MPMX19_03426at 817.272 kb on - strand, within MPMX19_03426at 817.353 kb on + strand, within MPMX19_03426at 817.353 kb on + strand, within MPMX19_03426at 817.353 kb on + strand, within MPMX19_03426at 817.353 kb on + strand, within MPMX19_03426at 817.354 kb on - strand, within MPMX19_03426at 817.354 kb on - strand, within MPMX19_03426at 817.354 kb on - strand, within MPMX19_03426at 817.354 kb on - strand, within MPMX19_03426at 817.496 kb on + strand, within MPMX19_03426at 817.525 kb on + strand, within MPMX19_03426at 817.551 kb on + strand, within MPMX19_03426at 817.551 kb on + strand, within MPMX19_03426at 817.551 kb on + strand, within MPMX19_03426at 817.551 kb on + strand, within MPMX19_03426at 817.552 kb on - strand, within MPMX19_03426at 817.552 kb on - strand, within MPMX19_03426at 817.552 kb on - strand, within MPMX19_03426at 817.552 kb on - strand, within MPMX19_03426at 817.552 kb on - strand, within MPMX19_03426at 817.593 kb on + strand, within MPMX19_03426at 817.593 kb on + strand, within MPMX19_03426at 817.594 kb on - strand, within MPMX19_03426at 817.594 kb on - strand, within MPMX19_03426at 817.617 kb on + strand, within MPMX19_03426at 817.617 kb on + strand, within MPMX19_03426at 817.617 kb on + strand, within MPMX19_03426at 817.617 kb on + strand, within MPMX19_03426at 817.617 kb on + strand, within MPMX19_03426at 817.617 kb on + strand, within MPMX19_03426at 817.617 kb on + strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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815,090 + -0.0
815,185 - -0.4
815,217 + -1.2
815,718 + MPMX19_03423 0.89 -0.8
815,718 + MPMX19_03423 0.89 +1.6
815,718 + MPMX19_03423 0.89 -0.3
815,718 + MPMX19_03423 0.89 -0.5
815,718 + MPMX19_03423 0.89 -1.8
815,718 + MPMX19_03423 0.89 -1.8
815,719 - MPMX19_03423 0.89 +0.1
815,719 - MPMX19_03423 0.89 -0.8
815,719 - MPMX19_03423 0.89 -0.1
815,719 - MPMX19_03423 0.89 -0.3
815,719 - MPMX19_03423 0.89 -0.4
815,719 - MPMX19_03423 0.89 -1.3
815,860 + -1.0
815,873 + +0.3
815,873 + -1.0
815,873 + -0.5
815,874 - -1.0
815,902 - -0.7
815,921 + -1.0
815,921 + +1.6
815,921 + -0.0
815,921 + -0.5
815,921 + +0.8
815,921 + -0.4
815,922 - -1.7
815,922 - -1.4
815,922 - -0.3
815,922 - -0.8
815,922 - -1.0
815,922 - -0.3
815,922 - -0.6
815,924 + +0.8
815,987 + -0.7
816,077 + MPMX19_03424 0.14 -0.1
816,077 + MPMX19_03424 0.14 -0.2
816,077 + MPMX19_03424 0.14 -0.3
816,077 + MPMX19_03424 0.14 -1.6
816,077 + MPMX19_03424 0.14 -0.3
816,077 + MPMX19_03424 0.14 -0.9
816,077 + MPMX19_03424 0.14 +0.9
816,077 + MPMX19_03424 0.14 -1.8
816,077 + MPMX19_03424 0.14 +0.1
816,077 + MPMX19_03424 0.14 +0.8
816,077 + MPMX19_03424 0.14 -0.9
816,077 + MPMX19_03424 0.14 -1.0
816,077 + MPMX19_03424 0.14 -0.4
816,077 + MPMX19_03424 0.14 -1.0
816,078 - MPMX19_03424 0.14 -0.6
816,078 - MPMX19_03424 0.14 -1.5
816,078 - MPMX19_03424 0.14 -0.2
816,078 - MPMX19_03424 0.14 +0.9
816,078 - MPMX19_03424 0.14 +0.8
816,078 - MPMX19_03424 0.14 -1.0
816,078 - MPMX19_03424 0.14 +0.3
816,078 - MPMX19_03424 0.14 -0.8
816,078 - MPMX19_03424 0.14 -0.5
816,078 - MPMX19_03424 0.14 -0.9
816,078 - MPMX19_03424 0.14 -1.0
816,078 - MPMX19_03424 0.14 -0.2
816,078 - MPMX19_03424 0.14 -2.3
816,078 - MPMX19_03424 0.14 -0.8
816,155 + MPMX19_03424 0.25 +0.2
816,155 + MPMX19_03424 0.25 -1.5
816,155 + MPMX19_03424 0.25 +0.2
816,155 + MPMX19_03424 0.25 -1.4
816,155 + MPMX19_03424 0.25 +0.2
816,155 + MPMX19_03424 0.25 +0.3
816,155 + MPMX19_03424 0.25 -0.2
816,155 + MPMX19_03424 0.25 -0.9
816,155 + MPMX19_03424 0.25 +0.3
816,155 + MPMX19_03424 0.25 -1.3
816,155 + MPMX19_03424 0.25 +0.1
816,156 - MPMX19_03424 0.26 -1.6
816,156 - MPMX19_03424 0.26 -0.9
816,156 - MPMX19_03424 0.26 +0.2
816,156 - MPMX19_03424 0.26 -0.6
816,156 - MPMX19_03424 0.26 -0.8
816,156 - MPMX19_03424 0.26 -0.9
816,156 - MPMX19_03424 0.26 +0.3
816,156 - MPMX19_03424 0.26 +0.6
816,447 - MPMX19_03424 0.69 +0.2
816,662 + -0.6
816,662 + -0.1
816,662 + -0.3
816,662 + -1.1
816,662 + -0.0
816,663 - +0.4
816,663 - -1.3
816,663 - -0.7
816,834 + MPMX19_03425 0.53 -0.9
816,835 - MPMX19_03425 0.54 -0.4
816,835 - MPMX19_03425 0.54 -0.6
817,033 - -0.6
817,033 - +0.8
817,033 - -0.2
817,033 - -1.8
817,140 + MPMX19_03426 0.10 +0.2
817,140 + MPMX19_03426 0.10 -0.2
817,140 + MPMX19_03426 0.10 -0.3
817,140 + MPMX19_03426 0.10 +0.8
817,141 - MPMX19_03426 0.10 +1.0
817,263 + MPMX19_03426 0.19 +0.2
817,263 + MPMX19_03426 0.19 -1.9
817,263 + MPMX19_03426 0.19 -0.3
817,263 + MPMX19_03426 0.19 -0.0
817,263 + MPMX19_03426 0.19 -1.0
817,264 - MPMX19_03426 0.19 -1.1
817,264 - MPMX19_03426 0.19 -0.9
817,264 - MPMX19_03426 0.19 -0.8
817,271 + MPMX19_03426 0.20 -0.6
817,271 + MPMX19_03426 0.20 -0.6
817,271 + MPMX19_03426 0.20 +0.1
817,271 + MPMX19_03426 0.20 +0.2
817,271 + MPMX19_03426 0.20 -0.0
817,271 + MPMX19_03426 0.20 -0.8
817,271 + MPMX19_03426 0.20 -0.8
817,271 + MPMX19_03426 0.20 -0.4
817,272 - MPMX19_03426 0.20 -0.6
817,272 - MPMX19_03426 0.20 +0.4
817,272 - MPMX19_03426 0.20 -0.4
817,272 - MPMX19_03426 0.20 -0.3
817,353 + MPMX19_03426 0.25 -0.3
817,353 + MPMX19_03426 0.25 -1.8
817,353 + MPMX19_03426 0.25 -1.8
817,353 + MPMX19_03426 0.25 -1.6
817,354 - MPMX19_03426 0.25 +0.3
817,354 - MPMX19_03426 0.25 +1.4
817,354 - MPMX19_03426 0.25 -0.7
817,354 - MPMX19_03426 0.25 -3.0
817,496 + MPMX19_03426 0.35 +0.3
817,525 + MPMX19_03426 0.37 +0.6
817,551 + MPMX19_03426 0.39 -1.3
817,551 + MPMX19_03426 0.39 +0.8
817,551 + MPMX19_03426 0.39 -1.1
817,551 + MPMX19_03426 0.39 -1.0
817,552 - MPMX19_03426 0.39 +0.3
817,552 - MPMX19_03426 0.39 -0.6
817,552 - MPMX19_03426 0.39 +0.2
817,552 - MPMX19_03426 0.39 -1.3
817,552 - MPMX19_03426 0.39 -2.3
817,593 + MPMX19_03426 0.42 -0.8
817,593 + MPMX19_03426 0.42 -2.3
817,594 - MPMX19_03426 0.42 +0.6
817,594 - MPMX19_03426 0.42 -0.8
817,617 + MPMX19_03426 0.44 +1.6
817,617 + MPMX19_03426 0.44 +0.7
817,617 + MPMX19_03426 0.44 -1.0
817,617 + MPMX19_03426 0.44 -0.4
817,617 + MPMX19_03426 0.44 +0.4
817,617 + MPMX19_03426 0.44 -0.9
817,617 + MPMX19_03426 0.44 -1.4
817,618 - MPMX19_03426 0.44 -0.2
817,618 - MPMX19_03426 0.44 -0.9
817,618 - MPMX19_03426 0.44 -0.0
817,618 - MPMX19_03426 0.44 -0.5
817,618 - MPMX19_03426 0.44 -0.9
817,618 - MPMX19_03426 0.44 -0.6
817,618 - MPMX19_03426 0.44 +0.2
817,618 - MPMX19_03426 0.44 -0.7
817,618 - MPMX19_03426 0.44 -0.2
817,618 - MPMX19_03426 0.44 +0.4
817,618 - MPMX19_03426 0.44 -0.4
817,618 - MPMX19_03426 0.44 -1.2
817,618 - MPMX19_03426 0.44 -1.0

Or see this region's nucleotide sequence