Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03399

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03398 and MPMX19_03399 are separated by 30 nucleotidesMPMX19_03399 and MPMX19_03400 are separated by 54 nucleotidesMPMX19_03400 and MPMX19_03401 are separated by 110 nucleotides MPMX19_03398: MPMX19_03398 - 5'-deoxyadenosine deaminase, at 784,067 to 785,464 _03398 MPMX19_03399: MPMX19_03399 - Guanidinopropionase, at 785,495 to 786,454 _03399 MPMX19_03400: MPMX19_03400 - hypothetical protein, at 786,509 to 786,928 _03400 MPMX19_03401: MPMX19_03401 - putative ABC transporter ATP-binding protein, at 787,039 to 789,180 _03401 Position (kb) 785 786 787Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 784.965 kb on + strand, within MPMX19_03398at 784.965 kb on + strand, within MPMX19_03398at 784.965 kb on + strand, within MPMX19_03398at 784.965 kb on + strand, within MPMX19_03398at 784.965 kb on + strand, within MPMX19_03398at 784.966 kb on - strand, within MPMX19_03398at 784.966 kb on - strand, within MPMX19_03398at 784.966 kb on - strand, within MPMX19_03398at 785.079 kb on + strand, within MPMX19_03398at 785.079 kb on + strand, within MPMX19_03398at 785.080 kb on - strand, within MPMX19_03398at 785.080 kb on - strand, within MPMX19_03398at 785.080 kb on - strand, within MPMX19_03398at 785.103 kb on + strand, within MPMX19_03398at 785.104 kb on - strand, within MPMX19_03398at 785.104 kb on - strand, within MPMX19_03398at 785.127 kb on + strand, within MPMX19_03398at 785.127 kb on + strand, within MPMX19_03398at 785.127 kb on + strand, within MPMX19_03398at 785.128 kb on - strand, within MPMX19_03398at 785.128 kb on - strand, within MPMX19_03398at 785.128 kb on - strand, within MPMX19_03398at 785.128 kb on - strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.490 kb on + strandat 785.490 kb on + strandat 785.490 kb on + strandat 785.512 kb on - strandat 785.673 kb on + strand, within MPMX19_03399at 785.673 kb on + strand, within MPMX19_03399at 785.674 kb on - strand, within MPMX19_03399at 785.751 kb on + strand, within MPMX19_03399at 785.751 kb on + strand, within MPMX19_03399at 785.751 kb on + strand, within MPMX19_03399at 785.751 kb on + strand, within MPMX19_03399at 785.752 kb on - strand, within MPMX19_03399at 785.752 kb on - strand, within MPMX19_03399at 785.752 kb on - strand, within MPMX19_03399at 785.752 kb on - strand, within MPMX19_03399at 785.752 kb on - strand, within MPMX19_03399at 785.752 kb on - strand, within MPMX19_03399at 785.754 kb on + strand, within MPMX19_03399at 785.754 kb on + strand, within MPMX19_03399at 785.754 kb on + strand, within MPMX19_03399at 785.754 kb on + strand, within MPMX19_03399at 785.754 kb on + strand, within MPMX19_03399at 785.754 kb on + strand, within MPMX19_03399at 785.754 kb on + strand, within MPMX19_03399at 785.755 kb on - strand, within MPMX19_03399at 785.839 kb on - strand, within MPMX19_03399at 785.952 kb on + strand, within MPMX19_03399at 785.952 kb on + strand, within MPMX19_03399at 785.953 kb on - strand, within MPMX19_03399at 786.036 kb on + strand, within MPMX19_03399at 786.036 kb on + strand, within MPMX19_03399at 786.036 kb on + strand, within MPMX19_03399at 786.036 kb on + strand, within MPMX19_03399at 786.037 kb on - strand, within MPMX19_03399at 786.037 kb on - strand, within MPMX19_03399at 786.037 kb on - strand, within MPMX19_03399at 786.037 kb on - strand, within MPMX19_03399at 786.037 kb on - strand, within MPMX19_03399at 786.037 kb on - strand, within MPMX19_03399at 786.138 kb on + strand, within MPMX19_03399at 786.138 kb on + strand, within MPMX19_03399at 786.139 kb on - strand, within MPMX19_03399at 786.139 kb on - strand, within MPMX19_03399at 786.139 kb on - strand, within MPMX19_03399at 786.139 kb on - strand, within MPMX19_03399at 786.270 kb on + strand, within MPMX19_03399at 786.270 kb on + strand, within MPMX19_03399at 786.271 kb on - strand, within MPMX19_03399at 786.327 kb on + strand, within MPMX19_03399at 786.327 kb on + strand, within MPMX19_03399at 786.327 kb on + strand, within MPMX19_03399at 786.328 kb on - strand, within MPMX19_03399at 786.328 kb on - strand, within MPMX19_03399at 786.340 kb on - strand, within MPMX19_03399at 786.340 kb on - strand, within MPMX19_03399at 786.633 kb on + strand, within MPMX19_03400at 786.633 kb on + strand, within MPMX19_03400at 786.634 kb on - strand, within MPMX19_03400at 786.649 kb on - strand, within MPMX19_03400at 786.666 kb on + strand, within MPMX19_03400at 786.666 kb on + strand, within MPMX19_03400at 786.666 kb on + strand, within MPMX19_03400at 786.666 kb on + strand, within MPMX19_03400at 786.666 kb on + strand, within MPMX19_03400at 786.666 kb on - strand, within MPMX19_03400at 786.667 kb on - strand, within MPMX19_03400at 786.667 kb on - strand, within MPMX19_03400at 786.667 kb on - strand, within MPMX19_03400at 786.667 kb on - strand, within MPMX19_03400at 786.667 kb on - strand, within MPMX19_03400at 786.667 kb on - strand, within MPMX19_03400at 786.667 kb on - strand, within MPMX19_03400at 786.882 kb on + strand, within MPMX19_03400at 786.882 kb on + strand, within MPMX19_03400at 786.882 kb on + strand, within MPMX19_03400at 786.882 kb on + strand, within MPMX19_03400at 786.883 kb on - strand, within MPMX19_03400at 786.883 kb on - strand, within MPMX19_03400at 786.883 kb on - strand, within MPMX19_03400at 786.883 kb on - strand, within MPMX19_03400at 786.968 kb on - strandat 786.968 kb on - strandat 787.316 kb on + strand, within MPMX19_03401at 787.316 kb on + strand, within MPMX19_03401at 787.316 kb on + strand, within MPMX19_03401at 787.317 kb on - strand, within MPMX19_03401at 787.317 kb on - strand, within MPMX19_03401at 787.325 kb on + strand, within MPMX19_03401at 787.326 kb on - strand, within MPMX19_03401at 787.379 kb on + strand, within MPMX19_03401at 787.379 kb on + strand, within MPMX19_03401at 787.379 kb on + strand, within MPMX19_03401at 787.380 kb on - strand, within MPMX19_03401at 787.380 kb on - strand, within MPMX19_03401at 787.380 kb on - strand, within MPMX19_03401at 787.380 kb on - strand, within MPMX19_03401at 787.442 kb on + strand, within MPMX19_03401at 787.442 kb on + strand, within MPMX19_03401at 787.442 kb on + strand, within MPMX19_03401at 787.442 kb on + strand, within MPMX19_03401at 787.442 kb on + strand, within MPMX19_03401at 787.442 kb on + strand, within MPMX19_03401at 787.442 kb on + strand, within MPMX19_03401at 787.442 kb on + strand, within MPMX19_03401at 787.442 kb on + strand, within MPMX19_03401at 787.443 kb on - strand, within MPMX19_03401at 787.443 kb on - strand, within MPMX19_03401at 787.443 kb on - strand, within MPMX19_03401at 787.443 kb on - strand, within MPMX19_03401

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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784,965 + MPMX19_03398 0.64 -1.0
784,965 + MPMX19_03398 0.64 -0.0
784,965 + MPMX19_03398 0.64 +0.4
784,965 + MPMX19_03398 0.64 -0.8
784,965 + MPMX19_03398 0.64 -0.0
784,966 - MPMX19_03398 0.64 +0.2
784,966 - MPMX19_03398 0.64 -0.0
784,966 - MPMX19_03398 0.64 +0.8
785,079 + MPMX19_03398 0.72 +0.5
785,079 + MPMX19_03398 0.72 -3.2
785,080 - MPMX19_03398 0.72 +0.5
785,080 - MPMX19_03398 0.72 -1.3
785,080 - MPMX19_03398 0.72 -0.0
785,103 + MPMX19_03398 0.74 +0.7
785,104 - MPMX19_03398 0.74 +0.2
785,104 - MPMX19_03398 0.74 -0.4
785,127 + MPMX19_03398 0.76 +1.0
785,127 + MPMX19_03398 0.76 -0.3
785,127 + MPMX19_03398 0.76 +0.1
785,128 - MPMX19_03398 0.76 +0.3
785,128 - MPMX19_03398 0.76 -0.9
785,128 - MPMX19_03398 0.76 +0.2
785,128 - MPMX19_03398 0.76 -0.2
785,184 + MPMX19_03398 0.80 -0.0
785,184 + MPMX19_03398 0.80 +0.8
785,184 + MPMX19_03398 0.80 -0.8
785,184 + MPMX19_03398 0.80 -1.5
785,184 + MPMX19_03398 0.80 -1.6
785,184 + MPMX19_03398 0.80 -0.3
785,184 + MPMX19_03398 0.80 -1.4
785,184 + MPMX19_03398 0.80 -1.0
785,184 + MPMX19_03398 0.80 -0.9
785,184 + MPMX19_03398 0.80 -0.9
785,184 + MPMX19_03398 0.80 -0.8
785,184 + MPMX19_03398 0.80 -0.8
785,184 + MPMX19_03398 0.80 -0.6
785,184 + MPMX19_03398 0.80 +1.0
785,184 + MPMX19_03398 0.80 -0.7
785,185 - MPMX19_03398 0.80 -1.8
785,185 - MPMX19_03398 0.80 +0.0
785,185 - MPMX19_03398 0.80 -0.8
785,185 - MPMX19_03398 0.80 -2.0
785,185 - MPMX19_03398 0.80 -0.6
785,185 - MPMX19_03398 0.80 -0.9
785,185 - MPMX19_03398 0.80 -0.5
785,185 - MPMX19_03398 0.80 +0.7
785,185 - MPMX19_03398 0.80 -0.7
785,185 - MPMX19_03398 0.80 -0.1
785,185 - MPMX19_03398 0.80 -0.0
785,185 - MPMX19_03398 0.80 +1.5
785,185 - MPMX19_03398 0.80 -0.1
785,185 - MPMX19_03398 0.80 +0.4
785,185 - MPMX19_03398 0.80 -0.1
785,185 - MPMX19_03398 0.80 +0.3
785,490 + -0.6
785,490 + -0.6
785,490 + -0.4
785,512 - +1.5
785,673 + MPMX19_03399 0.19 -0.5
785,673 + MPMX19_03399 0.19 -0.6
785,674 - MPMX19_03399 0.19 -0.6
785,751 + MPMX19_03399 0.27 -0.0
785,751 + MPMX19_03399 0.27 -1.1
785,751 + MPMX19_03399 0.27 -1.2
785,751 + MPMX19_03399 0.27 -0.9
785,752 - MPMX19_03399 0.27 -0.6
785,752 - MPMX19_03399 0.27 -0.5
785,752 - MPMX19_03399 0.27 -0.7
785,752 - MPMX19_03399 0.27 +0.5
785,752 - MPMX19_03399 0.27 -0.5
785,752 - MPMX19_03399 0.27 -0.5
785,754 + MPMX19_03399 0.27 -0.9
785,754 + MPMX19_03399 0.27 +0.5
785,754 + MPMX19_03399 0.27 +0.4
785,754 + MPMX19_03399 0.27 -1.1
785,754 + MPMX19_03399 0.27 -0.8
785,754 + MPMX19_03399 0.27 -0.5
785,754 + MPMX19_03399 0.27 -0.3
785,755 - MPMX19_03399 0.27 -1.0
785,839 - MPMX19_03399 0.36 +0.8
785,952 + MPMX19_03399 0.48 -0.5
785,952 + MPMX19_03399 0.48 -1.1
785,953 - MPMX19_03399 0.48 -0.5
786,036 + MPMX19_03399 0.56 -1.3
786,036 + MPMX19_03399 0.56 -0.3
786,036 + MPMX19_03399 0.56 -0.3
786,036 + MPMX19_03399 0.56 -1.2
786,037 - MPMX19_03399 0.56 -0.5
786,037 - MPMX19_03399 0.56 +0.5
786,037 - MPMX19_03399 0.56 -1.3
786,037 - MPMX19_03399 0.56 -0.0
786,037 - MPMX19_03399 0.56 +0.5
786,037 - MPMX19_03399 0.56 -0.7
786,138 + MPMX19_03399 0.67 -0.3
786,138 + MPMX19_03399 0.67 -1.0
786,139 - MPMX19_03399 0.67 -2.2
786,139 - MPMX19_03399 0.67 +0.3
786,139 - MPMX19_03399 0.67 +1.8
786,139 - MPMX19_03399 0.67 -0.6
786,270 + MPMX19_03399 0.81 -0.3
786,270 + MPMX19_03399 0.81 +0.8
786,271 - MPMX19_03399 0.81 +0.2
786,327 + MPMX19_03399 0.87 +0.5
786,327 + MPMX19_03399 0.87 -0.6
786,327 + MPMX19_03399 0.87 -1.0
786,328 - MPMX19_03399 0.87 +2.0
786,328 - MPMX19_03399 0.87 -0.8
786,340 - MPMX19_03399 0.88 +0.2
786,340 - MPMX19_03399 0.88 +0.5
786,633 + MPMX19_03400 0.30 +0.7
786,633 + MPMX19_03400 0.30 -1.3
786,634 - MPMX19_03400 0.30 +0.1
786,649 - MPMX19_03400 0.33 +0.4
786,666 + MPMX19_03400 0.37 -1.3
786,666 + MPMX19_03400 0.37 -0.5
786,666 + MPMX19_03400 0.37 +0.2
786,666 + MPMX19_03400 0.37 +0.4
786,666 + MPMX19_03400 0.37 -0.5
786,666 - MPMX19_03400 0.37 -2.2
786,667 - MPMX19_03400 0.38 -1.3
786,667 - MPMX19_03400 0.38 +0.4
786,667 - MPMX19_03400 0.38 +0.1
786,667 - MPMX19_03400 0.38 +0.5
786,667 - MPMX19_03400 0.38 -0.7
786,667 - MPMX19_03400 0.38 -1.2
786,667 - MPMX19_03400 0.38 +0.9
786,882 + MPMX19_03400 0.89 -0.3
786,882 + MPMX19_03400 0.89 -2.7
786,882 + MPMX19_03400 0.89 +0.4
786,882 + MPMX19_03400 0.89 +0.5
786,883 - MPMX19_03400 0.89 +0.5
786,883 - MPMX19_03400 0.89 +0.3
786,883 - MPMX19_03400 0.89 -1.3
786,883 - MPMX19_03400 0.89 -0.1
786,968 - -1.0
786,968 - -1.4
787,316 + MPMX19_03401 0.13 -1.3
787,316 + MPMX19_03401 0.13 -1.8
787,316 + MPMX19_03401 0.13 -0.6
787,317 - MPMX19_03401 0.13 -1.4
787,317 - MPMX19_03401 0.13 -1.3
787,325 + MPMX19_03401 0.13 +0.3
787,326 - MPMX19_03401 0.13 -0.5
787,379 + MPMX19_03401 0.16 -1.6
787,379 + MPMX19_03401 0.16 -0.6
787,379 + MPMX19_03401 0.16 -1.1
787,380 - MPMX19_03401 0.16 +0.2
787,380 - MPMX19_03401 0.16 -1.5
787,380 - MPMX19_03401 0.16 +0.2
787,380 - MPMX19_03401 0.16 -0.6
787,442 + MPMX19_03401 0.19 -1.3
787,442 + MPMX19_03401 0.19 +0.9
787,442 + MPMX19_03401 0.19 -1.2
787,442 + MPMX19_03401 0.19 +0.7
787,442 + MPMX19_03401 0.19 -1.5
787,442 + MPMX19_03401 0.19 -1.3
787,442 + MPMX19_03401 0.19 +1.0
787,442 + MPMX19_03401 0.19 -0.5
787,442 + MPMX19_03401 0.19 -0.0
787,443 - MPMX19_03401 0.19 +0.9
787,443 - MPMX19_03401 0.19 -1.2
787,443 - MPMX19_03401 0.19 +1.3
787,443 - MPMX19_03401 0.19 -0.5

Or see this region's nucleotide sequence