Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03398

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03397 and MPMX19_03398 are separated by 43 nucleotidesMPMX19_03398 and MPMX19_03399 are separated by 30 nucleotides MPMX19_03397: MPMX19_03397 - Acetylornithine deacetylase, at 782,860 to 784,023 _03397 MPMX19_03398: MPMX19_03398 - 5'-deoxyadenosine deaminase, at 784,067 to 785,464 _03398 MPMX19_03399: MPMX19_03399 - Guanidinopropionase, at 785,495 to 786,454 _03399 Position (kb) 784 785 786Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 783.111 kb on - strand, within MPMX19_03397at 783.332 kb on + strand, within MPMX19_03397at 783.332 kb on + strand, within MPMX19_03397at 783.332 kb on + strand, within MPMX19_03397at 783.332 kb on + strand, within MPMX19_03397at 783.332 kb on + strand, within MPMX19_03397at 783.332 kb on + strand, within MPMX19_03397at 783.332 kb on + strand, within MPMX19_03397at 783.333 kb on - strand, within MPMX19_03397at 783.333 kb on - strand, within MPMX19_03397at 783.333 kb on - strand, within MPMX19_03397at 783.333 kb on - strand, within MPMX19_03397at 783.333 kb on - strand, within MPMX19_03397at 783.333 kb on - strand, within MPMX19_03397at 783.333 kb on - strand, within MPMX19_03397at 783.333 kb on - strand, within MPMX19_03397at 783.614 kb on + strand, within MPMX19_03397at 783.614 kb on + strand, within MPMX19_03397at 783.615 kb on - strand, within MPMX19_03397at 783.615 kb on - strand, within MPMX19_03397at 783.615 kb on - strand, within MPMX19_03397at 783.615 kb on - strand, within MPMX19_03397at 783.615 kb on - strand, within MPMX19_03397at 783.615 kb on - strand, within MPMX19_03397at 783.615 kb on - strand, within MPMX19_03397at 784.044 kb on + strandat 784.044 kb on + strandat 784.044 kb on + strandat 784.044 kb on + strandat 784.044 kb on + strandat 784.044 kb on + strandat 784.045 kb on - strandat 784.045 kb on - strandat 784.145 kb on + strandat 784.145 kb on + strandat 784.145 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.207 kb on - strand, within MPMX19_03398at 784.207 kb on - strand, within MPMX19_03398at 784.207 kb on - strand, within MPMX19_03398at 784.207 kb on - strand, within MPMX19_03398at 784.207 kb on - strand, within MPMX19_03398at 784.207 kb on - strand, within MPMX19_03398at 784.207 kb on - strand, within MPMX19_03398at 784.207 kb on - strand, within MPMX19_03398at 784.239 kb on + strand, within MPMX19_03398at 784.239 kb on + strand, within MPMX19_03398at 784.239 kb on + strand, within MPMX19_03398at 784.240 kb on - strand, within MPMX19_03398at 784.240 kb on - strand, within MPMX19_03398at 784.240 kb on - strand, within MPMX19_03398at 784.965 kb on + strand, within MPMX19_03398at 784.965 kb on + strand, within MPMX19_03398at 784.965 kb on + strand, within MPMX19_03398at 784.965 kb on + strand, within MPMX19_03398at 784.965 kb on + strand, within MPMX19_03398at 784.966 kb on - strand, within MPMX19_03398at 784.966 kb on - strand, within MPMX19_03398at 784.966 kb on - strand, within MPMX19_03398at 785.079 kb on + strand, within MPMX19_03398at 785.079 kb on + strand, within MPMX19_03398at 785.080 kb on - strand, within MPMX19_03398at 785.080 kb on - strand, within MPMX19_03398at 785.080 kb on - strand, within MPMX19_03398at 785.103 kb on + strand, within MPMX19_03398at 785.104 kb on - strand, within MPMX19_03398at 785.104 kb on - strand, within MPMX19_03398at 785.127 kb on + strand, within MPMX19_03398at 785.127 kb on + strand, within MPMX19_03398at 785.127 kb on + strand, within MPMX19_03398at 785.128 kb on - strand, within MPMX19_03398at 785.128 kb on - strand, within MPMX19_03398at 785.128 kb on - strand, within MPMX19_03398at 785.128 kb on - strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.184 kb on + strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.185 kb on - strand, within MPMX19_03398at 785.490 kb on + strandat 785.490 kb on + strandat 785.490 kb on + strandat 785.512 kb on - strandat 785.673 kb on + strand, within MPMX19_03399at 785.673 kb on + strand, within MPMX19_03399at 785.674 kb on - strand, within MPMX19_03399at 785.751 kb on + strand, within MPMX19_03399at 785.751 kb on + strand, within MPMX19_03399at 785.751 kb on + strand, within MPMX19_03399at 785.751 kb on + strand, within MPMX19_03399at 785.752 kb on - strand, within MPMX19_03399at 785.752 kb on - strand, within MPMX19_03399at 785.752 kb on - strand, within MPMX19_03399at 785.752 kb on - strand, within MPMX19_03399at 785.752 kb on - strand, within MPMX19_03399at 785.752 kb on - strand, within MPMX19_03399at 785.754 kb on + strand, within MPMX19_03399at 785.754 kb on + strand, within MPMX19_03399at 785.754 kb on + strand, within MPMX19_03399at 785.754 kb on + strand, within MPMX19_03399at 785.754 kb on + strand, within MPMX19_03399at 785.754 kb on + strand, within MPMX19_03399at 785.754 kb on + strand, within MPMX19_03399at 785.755 kb on - strand, within MPMX19_03399at 785.839 kb on - strand, within MPMX19_03399at 785.952 kb on + strand, within MPMX19_03399at 785.952 kb on + strand, within MPMX19_03399at 785.953 kb on - strand, within MPMX19_03399at 786.036 kb on + strand, within MPMX19_03399at 786.036 kb on + strand, within MPMX19_03399at 786.036 kb on + strand, within MPMX19_03399at 786.036 kb on + strand, within MPMX19_03399at 786.037 kb on - strand, within MPMX19_03399at 786.037 kb on - strand, within MPMX19_03399at 786.037 kb on - strand, within MPMX19_03399at 786.037 kb on - strand, within MPMX19_03399at 786.037 kb on - strand, within MPMX19_03399at 786.037 kb on - strand, within MPMX19_03399at 786.138 kb on + strand, within MPMX19_03399at 786.138 kb on + strand, within MPMX19_03399at 786.139 kb on - strand, within MPMX19_03399at 786.139 kb on - strand, within MPMX19_03399at 786.139 kb on - strand, within MPMX19_03399at 786.139 kb on - strand, within MPMX19_03399at 786.270 kb on + strand, within MPMX19_03399at 786.270 kb on + strand, within MPMX19_03399at 786.271 kb on - strand, within MPMX19_03399at 786.327 kb on + strand, within MPMX19_03399at 786.327 kb on + strand, within MPMX19_03399at 786.327 kb on + strand, within MPMX19_03399at 786.328 kb on - strand, within MPMX19_03399at 786.328 kb on - strand, within MPMX19_03399at 786.340 kb on - strand, within MPMX19_03399at 786.340 kb on - strand, within MPMX19_03399

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
783,111 - MPMX19_03397 0.22 -0.5
783,332 + MPMX19_03397 0.41 -0.4
783,332 + MPMX19_03397 0.41 +0.2
783,332 + MPMX19_03397 0.41 -2.3
783,332 + MPMX19_03397 0.41 -0.1
783,332 + MPMX19_03397 0.41 +0.5
783,332 + MPMX19_03397 0.41 -0.5
783,332 + MPMX19_03397 0.41 -0.7
783,333 - MPMX19_03397 0.41 -1.8
783,333 - MPMX19_03397 0.41 -0.4
783,333 - MPMX19_03397 0.41 -1.3
783,333 - MPMX19_03397 0.41 -0.6
783,333 - MPMX19_03397 0.41 +0.1
783,333 - MPMX19_03397 0.41 -0.2
783,333 - MPMX19_03397 0.41 -0.1
783,333 - MPMX19_03397 0.41 +0.3
783,614 + MPMX19_03397 0.65 +0.2
783,614 + MPMX19_03397 0.65 +1.6
783,615 - MPMX19_03397 0.65 -0.0
783,615 - MPMX19_03397 0.65 -0.4
783,615 - MPMX19_03397 0.65 -0.1
783,615 - MPMX19_03397 0.65 -1.8
783,615 - MPMX19_03397 0.65 +0.2
783,615 - MPMX19_03397 0.65 -1.3
783,615 - MPMX19_03397 0.65 +0.7
784,044 + +1.2
784,044 + +2.0
784,044 + +0.9
784,044 + +1.2
784,044 + -1.0
784,044 + -0.3
784,045 - -0.7
784,045 - +0.5
784,145 + +0.5
784,145 + +0.5
784,145 + +1.8
784,206 + +0.3
784,206 + -0.5
784,206 + -1.0
784,206 + -2.0
784,206 + -1.3
784,206 + -0.5
784,206 + -0.6
784,206 + +0.8
784,206 + -1.0
784,206 + -0.3
784,206 + -0.8
784,206 + -0.3
784,206 + -1.2
784,206 + -0.1
784,206 + -1.0
784,206 + -0.9
784,206 + -0.0
784,206 + -0.3
784,207 - MPMX19_03398 0.10 +0.0
784,207 - MPMX19_03398 0.10 -0.4
784,207 - MPMX19_03398 0.10 -0.7
784,207 - MPMX19_03398 0.10 -0.3
784,207 - MPMX19_03398 0.10 +0.7
784,207 - MPMX19_03398 0.10 +1.2
784,207 - MPMX19_03398 0.10 -1.8
784,207 - MPMX19_03398 0.10 -1.4
784,239 + MPMX19_03398 0.12 -1.5
784,239 + MPMX19_03398 0.12 +0.5
784,239 + MPMX19_03398 0.12 -0.7
784,240 - MPMX19_03398 0.12 -1.9
784,240 - MPMX19_03398 0.12 -0.4
784,240 - MPMX19_03398 0.12 -0.5
784,965 + MPMX19_03398 0.64 -1.0
784,965 + MPMX19_03398 0.64 -0.0
784,965 + MPMX19_03398 0.64 +0.4
784,965 + MPMX19_03398 0.64 -0.8
784,965 + MPMX19_03398 0.64 -0.0
784,966 - MPMX19_03398 0.64 +0.2
784,966 - MPMX19_03398 0.64 -0.0
784,966 - MPMX19_03398 0.64 +0.8
785,079 + MPMX19_03398 0.72 +0.5
785,079 + MPMX19_03398 0.72 -3.2
785,080 - MPMX19_03398 0.72 +0.5
785,080 - MPMX19_03398 0.72 -1.3
785,080 - MPMX19_03398 0.72 -0.0
785,103 + MPMX19_03398 0.74 +0.7
785,104 - MPMX19_03398 0.74 +0.2
785,104 - MPMX19_03398 0.74 -0.4
785,127 + MPMX19_03398 0.76 +1.0
785,127 + MPMX19_03398 0.76 -0.3
785,127 + MPMX19_03398 0.76 +0.1
785,128 - MPMX19_03398 0.76 +0.3
785,128 - MPMX19_03398 0.76 -0.9
785,128 - MPMX19_03398 0.76 +0.2
785,128 - MPMX19_03398 0.76 -0.2
785,184 + MPMX19_03398 0.80 -0.0
785,184 + MPMX19_03398 0.80 +0.8
785,184 + MPMX19_03398 0.80 -0.8
785,184 + MPMX19_03398 0.80 -1.5
785,184 + MPMX19_03398 0.80 -1.6
785,184 + MPMX19_03398 0.80 -0.3
785,184 + MPMX19_03398 0.80 -1.4
785,184 + MPMX19_03398 0.80 -1.0
785,184 + MPMX19_03398 0.80 -0.9
785,184 + MPMX19_03398 0.80 -0.9
785,184 + MPMX19_03398 0.80 -0.8
785,184 + MPMX19_03398 0.80 -0.8
785,184 + MPMX19_03398 0.80 -0.6
785,184 + MPMX19_03398 0.80 +1.0
785,184 + MPMX19_03398 0.80 -0.7
785,185 - MPMX19_03398 0.80 -1.8
785,185 - MPMX19_03398 0.80 +0.0
785,185 - MPMX19_03398 0.80 -0.8
785,185 - MPMX19_03398 0.80 -2.0
785,185 - MPMX19_03398 0.80 -0.6
785,185 - MPMX19_03398 0.80 -0.9
785,185 - MPMX19_03398 0.80 -0.5
785,185 - MPMX19_03398 0.80 +0.7
785,185 - MPMX19_03398 0.80 -0.7
785,185 - MPMX19_03398 0.80 -0.1
785,185 - MPMX19_03398 0.80 -0.0
785,185 - MPMX19_03398 0.80 +1.5
785,185 - MPMX19_03398 0.80 -0.1
785,185 - MPMX19_03398 0.80 +0.4
785,185 - MPMX19_03398 0.80 -0.1
785,185 - MPMX19_03398 0.80 +0.3
785,490 + -0.6
785,490 + -0.6
785,490 + -0.4
785,512 - +1.5
785,673 + MPMX19_03399 0.19 -0.5
785,673 + MPMX19_03399 0.19 -0.6
785,674 - MPMX19_03399 0.19 -0.6
785,751 + MPMX19_03399 0.27 -0.0
785,751 + MPMX19_03399 0.27 -1.1
785,751 + MPMX19_03399 0.27 -1.2
785,751 + MPMX19_03399 0.27 -0.9
785,752 - MPMX19_03399 0.27 -0.6
785,752 - MPMX19_03399 0.27 -0.5
785,752 - MPMX19_03399 0.27 -0.7
785,752 - MPMX19_03399 0.27 +0.5
785,752 - MPMX19_03399 0.27 -0.5
785,752 - MPMX19_03399 0.27 -0.5
785,754 + MPMX19_03399 0.27 -0.9
785,754 + MPMX19_03399 0.27 +0.5
785,754 + MPMX19_03399 0.27 +0.4
785,754 + MPMX19_03399 0.27 -1.1
785,754 + MPMX19_03399 0.27 -0.8
785,754 + MPMX19_03399 0.27 -0.5
785,754 + MPMX19_03399 0.27 -0.3
785,755 - MPMX19_03399 0.27 -1.0
785,839 - MPMX19_03399 0.36 +0.8
785,952 + MPMX19_03399 0.48 -0.5
785,952 + MPMX19_03399 0.48 -1.1
785,953 - MPMX19_03399 0.48 -0.5
786,036 + MPMX19_03399 0.56 -1.3
786,036 + MPMX19_03399 0.56 -0.3
786,036 + MPMX19_03399 0.56 -0.3
786,036 + MPMX19_03399 0.56 -1.2
786,037 - MPMX19_03399 0.56 -0.5
786,037 - MPMX19_03399 0.56 +0.5
786,037 - MPMX19_03399 0.56 -1.3
786,037 - MPMX19_03399 0.56 -0.0
786,037 - MPMX19_03399 0.56 +0.5
786,037 - MPMX19_03399 0.56 -0.7
786,138 + MPMX19_03399 0.67 -0.3
786,138 + MPMX19_03399 0.67 -1.0
786,139 - MPMX19_03399 0.67 -2.2
786,139 - MPMX19_03399 0.67 +0.3
786,139 - MPMX19_03399 0.67 +1.8
786,139 - MPMX19_03399 0.67 -0.6
786,270 + MPMX19_03399 0.81 -0.3
786,270 + MPMX19_03399 0.81 +0.8
786,271 - MPMX19_03399 0.81 +0.2
786,327 + MPMX19_03399 0.87 +0.5
786,327 + MPMX19_03399 0.87 -0.6
786,327 + MPMX19_03399 0.87 -1.0
786,328 - MPMX19_03399 0.87 +2.0
786,328 - MPMX19_03399 0.87 -0.8
786,340 - MPMX19_03399 0.88 +0.2
786,340 - MPMX19_03399 0.88 +0.5

Or see this region's nucleotide sequence