Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03387 and MPMX19_03388 overlap by 4 nucleotides MPMX19_03388 and MPMX19_03389 overlap by 13 nucleotides MPMX19_03389 and MPMX19_03390 overlap by 8 nucleotides
MPMX19_03387: MPMX19_03387 - hypothetical protein, at 771,335 to 774,394
_03387
MPMX19_03388: MPMX19_03388 - 6-hydroxypseudooxynicotine dehydrogenase complex subunit alpha, at 774,391 to 775,227
_03388
MPMX19_03389: MPMX19_03389 - Carbon monoxide dehydrogenase small chain, at 775,215 to 775,745
_03389
MPMX19_03390: MPMX19_03390 - 4-chlorobenzoate--CoA ligase, at 775,738 to 777,309
_03390
Position (kb) 775
776 Strain fitness (log2 ratio) -2
-1
0
1
2 at 774.412 kb on + strand at 774.412 kb on + strand at 774.412 kb on + strand at 774.412 kb on + strand at 774.412 kb on + strand at 774.412 kb on + strand at 775.269 kb on + strand, within MPMX19_03389 at 775.600 kb on - strand, within MPMX19_03389 at 775.600 kb on - strand, within MPMX19_03389 at 775.636 kb on + strand, within MPMX19_03389 at 775.636 kb on + strand, within MPMX19_03389 at 775.636 kb on + strand, within MPMX19_03389 at 775.636 kb on + strand, within MPMX19_03389 at 775.637 kb on - strand, within MPMX19_03389 at 775.637 kb on - strand, within MPMX19_03389 at 775.637 kb on - strand, within MPMX19_03389 at 775.637 kb on - strand, within MPMX19_03389 at 775.677 kb on + strand, within MPMX19_03389 at 775.825 kb on + strand at 775.826 kb on - strand at 775.826 kb on - strand at 776.014 kb on + strand, within MPMX19_03390 at 776.015 kb on - strand, within MPMX19_03390 at 776.050 kb on + strand, within MPMX19_03390 at 776.050 kb on + strand, within MPMX19_03390 at 776.050 kb on + strand, within MPMX19_03390 at 776.051 kb on - strand, within MPMX19_03390 at 776.051 kb on - strand, within MPMX19_03390 at 776.224 kb on + strand, within MPMX19_03390 at 776.224 kb on + strand, within MPMX19_03390 at 776.224 kb on + strand, within MPMX19_03390 at 776.224 kb on + strand, within MPMX19_03390 at 776.225 kb on - strand, within MPMX19_03390 at 776.225 kb on - strand, within MPMX19_03390 at 776.225 kb on - strand, within MPMX19_03390 at 776.225 kb on - strand, within MPMX19_03390 at 776.356 kb on + strand, within MPMX19_03390 at 776.357 kb on - strand, within MPMX19_03390 at 776.357 kb on - strand, within MPMX19_03390 at 776.357 kb on - strand, within MPMX19_03390 at 776.482 kb on + strand, within MPMX19_03390 at 776.482 kb on + strand, within MPMX19_03390 at 776.483 kb on - strand, within MPMX19_03390 at 776.483 kb on - strand, within MPMX19_03390 at 776.483 kb on - strand, within MPMX19_03390 at 776.483 kb on - strand, within MPMX19_03390 at 776.483 kb on - strand, within MPMX19_03390 at 776.500 kb on + strand, within MPMX19_03390 at 776.500 kb on + strand, within MPMX19_03390 at 776.501 kb on - strand, within MPMX19_03390 at 776.501 kb on - strand, within MPMX19_03390 at 776.501 kb on - strand, within MPMX19_03390 at 776.645 kb on - strand, within MPMX19_03390 at 776.662 kb on + strand, within MPMX19_03390 at 776.662 kb on + strand, within MPMX19_03390 at 776.662 kb on + strand, within MPMX19_03390 at 776.662 kb on + strand, within MPMX19_03390 at 776.662 kb on + strand, within MPMX19_03390 at 776.662 kb on + strand, within MPMX19_03390 at 776.662 kb on + strand, within MPMX19_03390 at 776.662 kb on + strand, within MPMX19_03390 at 776.663 kb on - strand, within MPMX19_03390 at 776.663 kb on - strand, within MPMX19_03390 at 776.663 kb on - strand, within MPMX19_03390 at 776.663 kb on - strand, within MPMX19_03390 at 776.663 kb on - strand, within MPMX19_03390 at 776.663 kb on - strand, within MPMX19_03390
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 774,412 + -1.1 774,412 + +2.3 774,412 + +0.6 774,412 + -0.4 774,412 + +0.3 774,412 + -0.4 775,269 + MPMX19_03389 0.10 -0.8 775,600 - MPMX19_03389 0.73 -0.0 775,600 - MPMX19_03389 0.73 -0.0 775,636 + MPMX19_03389 0.79 -1.0 775,636 + MPMX19_03389 0.79 -1.4 775,636 + MPMX19_03389 0.79 +0.4 775,636 + MPMX19_03389 0.79 -0.6 775,637 - MPMX19_03389 0.79 -0.6 775,637 - MPMX19_03389 0.79 -1.8 775,637 - MPMX19_03389 0.79 -2.1 775,637 - MPMX19_03389 0.79 -0.6 775,677 + MPMX19_03389 0.87 -1.9 775,825 + -0.0 775,826 - -0.4 775,826 - +0.9 776,014 + MPMX19_03390 0.18 +0.3 776,015 - MPMX19_03390 0.18 -0.4 776,050 + MPMX19_03390 0.20 -1.3 776,050 + MPMX19_03390 0.20 -0.0 776,050 + MPMX19_03390 0.20 +0.6 776,051 - MPMX19_03390 0.20 +0.7 776,051 - MPMX19_03390 0.20 -0.9 776,224 + MPMX19_03390 0.31 +0.4 776,224 + MPMX19_03390 0.31 -1.9 776,224 + MPMX19_03390 0.31 -1.6 776,224 + MPMX19_03390 0.31 -1.6 776,225 - MPMX19_03390 0.31 -0.8 776,225 - MPMX19_03390 0.31 -0.6 776,225 - MPMX19_03390 0.31 -1.7 776,225 - MPMX19_03390 0.31 -0.7 776,356 + MPMX19_03390 0.39 -0.1 776,357 - MPMX19_03390 0.39 +0.3 776,357 - MPMX19_03390 0.39 +1.0 776,357 - MPMX19_03390 0.39 -0.6 776,482 + MPMX19_03390 0.47 -0.0 776,482 + MPMX19_03390 0.47 -0.8 776,483 - MPMX19_03390 0.47 -0.0 776,483 - MPMX19_03390 0.47 -0.6 776,483 - MPMX19_03390 0.47 +0.2 776,483 - MPMX19_03390 0.47 -1.1 776,483 - MPMX19_03390 0.47 -0.3 776,500 + MPMX19_03390 0.48 -1.3 776,500 + MPMX19_03390 0.48 +0.1 776,501 - MPMX19_03390 0.49 +0.1 776,501 - MPMX19_03390 0.49 -1.3 776,501 - MPMX19_03390 0.49 -1.0 776,645 - MPMX19_03390 0.58 +0.2 776,662 + MPMX19_03390 0.59 -0.3 776,662 + MPMX19_03390 0.59 -0.1 776,662 + MPMX19_03390 0.59 -0.8 776,662 + MPMX19_03390 0.59 +0.4 776,662 + MPMX19_03390 0.59 -0.3 776,662 + MPMX19_03390 0.59 -1.4 776,662 + MPMX19_03390 0.59 +1.1 776,662 + MPMX19_03390 0.59 +0.1 776,663 - MPMX19_03390 0.59 -1.4 776,663 - MPMX19_03390 0.59 -0.4 776,663 - MPMX19_03390 0.59 +0.1 776,663 - MPMX19_03390 0.59 -0.8 776,663 - MPMX19_03390 0.59 +0.4 776,663 - MPMX19_03390 0.59 -0.9
Or see this region's nucleotide sequence