Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03386

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03385 and MPMX19_03386 are separated by 142 nucleotidesMPMX19_03386 and MPMX19_03387 are separated by 124 nucleotides MPMX19_03385: MPMX19_03385 - HTH-type transcriptional regulator HdfR, at 769,281 to 770,192 _03385 MPMX19_03386: MPMX19_03386 - HTH-type transcriptional activator RhaR, at 770,335 to 771,210 _03386 MPMX19_03387: MPMX19_03387 - hypothetical protein, at 771,335 to 774,394 _03387 Position (kb) 770 771 772Strain fitness (log2 ratio) -3 -2 -1 0 1at 769.575 kb on + strand, within MPMX19_03385at 769.575 kb on + strand, within MPMX19_03385at 769.575 kb on + strand, within MPMX19_03385at 769.575 kb on + strand, within MPMX19_03385at 769.575 kb on + strand, within MPMX19_03385at 769.575 kb on + strand, within MPMX19_03385at 769.576 kb on - strand, within MPMX19_03385at 769.576 kb on - strand, within MPMX19_03385at 769.576 kb on - strand, within MPMX19_03385at 769.591 kb on - strand, within MPMX19_03385at 769.591 kb on - strand, within MPMX19_03385at 769.629 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.899 kb on + strand, within MPMX19_03385at 769.899 kb on + strand, within MPMX19_03385at 769.899 kb on + strand, within MPMX19_03385at 769.900 kb on - strand, within MPMX19_03385at 770.013 kb on + strand, within MPMX19_03385at 770.013 kb on + strand, within MPMX19_03385at 770.014 kb on - strand, within MPMX19_03385at 770.014 kb on - strand, within MPMX19_03385at 770.014 kb on - strand, within MPMX19_03385at 770.160 kb on + strandat 770.160 kb on + strandat 770.161 kb on - strandat 770.161 kb on - strandat 770.161 kb on - strandat 770.229 kb on + strandat 770.229 kb on + strandat 770.229 kb on + strandat 770.229 kb on + strandat 770.229 kb on + strandat 770.229 kb on + strandat 770.229 kb on + strandat 770.230 kb on - strandat 770.230 kb on - strandat 770.230 kb on - strandat 770.230 kb on - strandat 770.230 kb on - strandat 770.230 kb on - strandat 770.230 kb on - strandat 770.230 kb on - strandat 770.240 kb on + strandat 770.241 kb on - strandat 770.241 kb on - strandat 770.488 kb on + strand, within MPMX19_03386at 770.488 kb on + strand, within MPMX19_03386at 770.489 kb on - strand, within MPMX19_03386at 770.542 kb on + strand, within MPMX19_03386at 770.542 kb on + strand, within MPMX19_03386at 770.542 kb on + strand, within MPMX19_03386at 770.542 kb on + strand, within MPMX19_03386at 770.542 kb on + strand, within MPMX19_03386at 770.542 kb on + strand, within MPMX19_03386at 770.542 kb on + strand, within MPMX19_03386at 770.542 kb on + strand, within MPMX19_03386at 770.543 kb on - strand, within MPMX19_03386at 770.543 kb on - strand, within MPMX19_03386at 770.543 kb on - strand, within MPMX19_03386at 770.543 kb on - strand, within MPMX19_03386at 770.543 kb on - strand, within MPMX19_03386at 770.543 kb on - strand, within MPMX19_03386at 770.587 kb on + strand, within MPMX19_03386at 770.587 kb on + strand, within MPMX19_03386at 770.587 kb on + strand, within MPMX19_03386at 770.587 kb on + strand, within MPMX19_03386at 770.587 kb on + strand, within MPMX19_03386at 770.587 kb on + strand, within MPMX19_03386at 770.587 kb on + strand, within MPMX19_03386at 770.587 kb on + strand, within MPMX19_03386at 770.588 kb on - strand, within MPMX19_03386at 770.588 kb on - strand, within MPMX19_03386at 770.588 kb on - strand, within MPMX19_03386at 770.588 kb on - strand, within MPMX19_03386at 770.588 kb on - strand, within MPMX19_03386at 770.588 kb on - strand, within MPMX19_03386at 770.588 kb on - strand, within MPMX19_03386at 770.683 kb on + strand, within MPMX19_03386at 770.683 kb on + strand, within MPMX19_03386at 770.684 kb on - strand, within MPMX19_03386at 770.684 kb on - strand, within MPMX19_03386at 770.684 kb on - strand, within MPMX19_03386at 770.684 kb on - strand, within MPMX19_03386at 770.684 kb on - strand, within MPMX19_03386at 770.684 kb on - strand, within MPMX19_03386at 770.725 kb on + strand, within MPMX19_03386at 770.725 kb on + strand, within MPMX19_03386at 770.725 kb on + strand, within MPMX19_03386at 770.726 kb on - strand, within MPMX19_03386at 770.726 kb on - strand, within MPMX19_03386at 770.726 kb on - strand, within MPMX19_03386at 770.726 kb on - strand, within MPMX19_03386at 770.827 kb on + strand, within MPMX19_03386at 770.827 kb on + strand, within MPMX19_03386at 770.827 kb on + strand, within MPMX19_03386at 770.827 kb on + strand, within MPMX19_03386at 770.827 kb on + strand, within MPMX19_03386at 770.828 kb on - strand, within MPMX19_03386at 770.828 kb on - strand, within MPMX19_03386at 770.828 kb on - strand, within MPMX19_03386at 770.828 kb on - strand, within MPMX19_03386at 770.983 kb on - strand, within MPMX19_03386at 770.995 kb on + strand, within MPMX19_03386at 770.995 kb on + strand, within MPMX19_03386at 770.995 kb on + strand, within MPMX19_03386at 770.996 kb on - strand, within MPMX19_03386at 770.996 kb on - strand, within MPMX19_03386at 770.996 kb on - strand, within MPMX19_03386at 771.145 kb on + strandat 771.145 kb on + strandat 771.225 kb on + strandat 771.242 kb on + strandat 771.243 kb on - strandat 771.243 kb on - strandat 771.256 kb on + strandat 771.256 kb on + strandat 771.261 kb on + strandat 771.261 kb on + strandat 771.281 kb on + strandat 771.474 kb on - strandat 771.474 kb on - strandat 771.740 kb on + strand, within MPMX19_03387at 771.740 kb on + strand, within MPMX19_03387at 771.741 kb on - strand, within MPMX19_03387at 771.741 kb on - strand, within MPMX19_03387at 771.741 kb on - strand, within MPMX19_03387at 771.779 kb on + strand, within MPMX19_03387at 771.779 kb on + strand, within MPMX19_03387at 771.947 kb on + strand, within MPMX19_03387at 771.948 kb on - strand, within MPMX19_03387at 771.998 kb on + strand, within MPMX19_03387at 771.999 kb on - strand, within MPMX19_03387at 771.999 kb on - strand, within MPMX19_03387at 771.999 kb on - strand, within MPMX19_03387at 772.019 kb on + strand, within MPMX19_03387at 772.019 kb on + strand, within MPMX19_03387at 772.019 kb on + strand, within MPMX19_03387at 772.020 kb on - strand, within MPMX19_03387at 772.163 kb on + strand, within MPMX19_03387at 772.163 kb on + strand, within MPMX19_03387at 772.163 kb on + strand, within MPMX19_03387at 772.163 kb on + strand, within MPMX19_03387at 772.163 kb on + strand, within MPMX19_03387at 772.163 kb on + strand, within MPMX19_03387at 772.163 kb on + strand, within MPMX19_03387at 772.163 kb on + strand, within MPMX19_03387at 772.164 kb on - strand, within MPMX19_03387at 772.164 kb on - strand, within MPMX19_03387at 772.164 kb on - strand, within MPMX19_03387at 772.164 kb on - strand, within MPMX19_03387at 772.164 kb on - strand, within MPMX19_03387at 772.164 kb on - strand, within MPMX19_03387at 772.164 kb on - strand, within MPMX19_03387at 772.164 kb on - strand, within MPMX19_03387

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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769,575 + MPMX19_03385 0.32 +0.6
769,575 + MPMX19_03385 0.32 -0.4
769,575 + MPMX19_03385 0.32 -1.3
769,575 + MPMX19_03385 0.32 -0.1
769,575 + MPMX19_03385 0.32 -0.0
769,575 + MPMX19_03385 0.32 -0.4
769,576 - MPMX19_03385 0.32 -0.8
769,576 - MPMX19_03385 0.32 -0.0
769,576 - MPMX19_03385 0.32 -0.1
769,591 - MPMX19_03385 0.34 -1.6
769,591 - MPMX19_03385 0.34 -0.3
769,629 + MPMX19_03385 0.38 +1.1
769,854 + MPMX19_03385 0.63 +0.2
769,854 + MPMX19_03385 0.63 -0.2
769,854 + MPMX19_03385 0.63 +0.8
769,854 + MPMX19_03385 0.63 -0.0
769,854 + MPMX19_03385 0.63 +0.5
769,854 + MPMX19_03385 0.63 -2.0
769,854 + MPMX19_03385 0.63 -0.3
769,854 + MPMX19_03385 0.63 -2.1
769,854 + MPMX19_03385 0.63 -1.6
769,854 + MPMX19_03385 0.63 -0.7
769,854 + MPMX19_03385 0.63 +0.7
769,854 + MPMX19_03385 0.63 -1.3
769,854 + MPMX19_03385 0.63 +0.4
769,854 + MPMX19_03385 0.63 -0.2
769,855 - MPMX19_03385 0.63 -1.1
769,855 - MPMX19_03385 0.63 -0.0
769,855 - MPMX19_03385 0.63 -1.0
769,855 - MPMX19_03385 0.63 -0.2
769,855 - MPMX19_03385 0.63 +0.2
769,855 - MPMX19_03385 0.63 -0.8
769,855 - MPMX19_03385 0.63 -0.0
769,855 - MPMX19_03385 0.63 -0.2
769,855 - MPMX19_03385 0.63 -1.4
769,855 - MPMX19_03385 0.63 +0.8
769,855 - MPMX19_03385 0.63 -1.6
769,855 - MPMX19_03385 0.63 -1.0
769,855 - MPMX19_03385 0.63 -0.0
769,855 - MPMX19_03385 0.63 +0.4
769,855 - MPMX19_03385 0.63 -0.0
769,899 + MPMX19_03385 0.68 -1.4
769,899 + MPMX19_03385 0.68 -1.8
769,899 + MPMX19_03385 0.68 -0.9
769,900 - MPMX19_03385 0.68 +0.4
770,013 + MPMX19_03385 0.80 +0.2
770,013 + MPMX19_03385 0.80 -0.2
770,014 - MPMX19_03385 0.80 -1.4
770,014 - MPMX19_03385 0.80 -0.2
770,014 - MPMX19_03385 0.80 -0.0
770,160 + -0.5
770,160 + -0.8
770,161 - -0.9
770,161 - +1.1
770,161 - +0.8
770,229 + -0.1
770,229 + -1.0
770,229 + -1.0
770,229 + -0.8
770,229 + -2.2
770,229 + -0.3
770,229 + +0.6
770,230 - -1.0
770,230 - -0.2
770,230 - +1.1
770,230 - -1.8
770,230 - -0.3
770,230 - -0.0
770,230 - -0.3
770,230 - +0.3
770,240 + +0.1
770,241 - +1.1
770,241 - -2.0
770,488 + MPMX19_03386 0.17 -0.2
770,488 + MPMX19_03386 0.17 -1.4
770,489 - MPMX19_03386 0.18 -0.1
770,542 + MPMX19_03386 0.24 +0.5
770,542 + MPMX19_03386 0.24 -0.5
770,542 + MPMX19_03386 0.24 -0.1
770,542 + MPMX19_03386 0.24 +1.1
770,542 + MPMX19_03386 0.24 +1.0
770,542 + MPMX19_03386 0.24 +0.4
770,542 + MPMX19_03386 0.24 +0.6
770,542 + MPMX19_03386 0.24 -1.4
770,543 - MPMX19_03386 0.24 +0.6
770,543 - MPMX19_03386 0.24 -0.1
770,543 - MPMX19_03386 0.24 +0.6
770,543 - MPMX19_03386 0.24 -0.6
770,543 - MPMX19_03386 0.24 -0.4
770,543 - MPMX19_03386 0.24 +0.2
770,587 + MPMX19_03386 0.29 -2.0
770,587 + MPMX19_03386 0.29 -0.7
770,587 + MPMX19_03386 0.29 -0.0
770,587 + MPMX19_03386 0.29 -0.0
770,587 + MPMX19_03386 0.29 -0.3
770,587 + MPMX19_03386 0.29 -1.0
770,587 + MPMX19_03386 0.29 +0.6
770,587 + MPMX19_03386 0.29 -1.0
770,588 - MPMX19_03386 0.29 +0.7
770,588 - MPMX19_03386 0.29 -0.4
770,588 - MPMX19_03386 0.29 -0.8
770,588 - MPMX19_03386 0.29 -0.6
770,588 - MPMX19_03386 0.29 +0.8
770,588 - MPMX19_03386 0.29 +1.0
770,588 - MPMX19_03386 0.29 -0.2
770,683 + MPMX19_03386 0.40 -0.7
770,683 + MPMX19_03386 0.40 +0.0
770,684 - MPMX19_03386 0.40 +0.2
770,684 - MPMX19_03386 0.40 +0.6
770,684 - MPMX19_03386 0.40 -0.0
770,684 - MPMX19_03386 0.40 +0.7
770,684 - MPMX19_03386 0.40 +0.2
770,684 - MPMX19_03386 0.40 -0.9
770,725 + MPMX19_03386 0.45 -1.9
770,725 + MPMX19_03386 0.45 -1.0
770,725 + MPMX19_03386 0.45 +0.6
770,726 - MPMX19_03386 0.45 -2.5
770,726 - MPMX19_03386 0.45 -0.3
770,726 - MPMX19_03386 0.45 +0.8
770,726 - MPMX19_03386 0.45 -2.4
770,827 + MPMX19_03386 0.56 +1.1
770,827 + MPMX19_03386 0.56 +0.6
770,827 + MPMX19_03386 0.56 -0.6
770,827 + MPMX19_03386 0.56 +0.6
770,827 + MPMX19_03386 0.56 -0.4
770,828 - MPMX19_03386 0.56 -1.4
770,828 - MPMX19_03386 0.56 -0.4
770,828 - MPMX19_03386 0.56 -2.0
770,828 - MPMX19_03386 0.56 -1.3
770,983 - MPMX19_03386 0.74 +0.6
770,995 + MPMX19_03386 0.75 -0.4
770,995 + MPMX19_03386 0.75 -0.5
770,995 + MPMX19_03386 0.75 -1.0
770,996 - MPMX19_03386 0.75 +0.8
770,996 - MPMX19_03386 0.75 -0.4
770,996 - MPMX19_03386 0.75 +0.5
771,145 + +0.3
771,145 + +1.1
771,225 + -0.0
771,242 + -0.8
771,243 - +0.3
771,243 - -1.3
771,256 + +0.1
771,256 + -1.9
771,261 + -0.6
771,261 + +0.2
771,281 + -2.5
771,474 - -0.4
771,474 - +0.1
771,740 + MPMX19_03387 0.13 -0.1
771,740 + MPMX19_03387 0.13 -1.6
771,741 - MPMX19_03387 0.13 +1.0
771,741 - MPMX19_03387 0.13 +1.1
771,741 - MPMX19_03387 0.13 -0.0
771,779 + MPMX19_03387 0.15 +0.6
771,779 + MPMX19_03387 0.15 -0.7
771,947 + MPMX19_03387 0.20 -0.4
771,948 - MPMX19_03387 0.20 +0.3
771,998 + MPMX19_03387 0.22 -1.4
771,999 - MPMX19_03387 0.22 -0.1
771,999 - MPMX19_03387 0.22 -0.4
771,999 - MPMX19_03387 0.22 -0.3
772,019 + MPMX19_03387 0.22 -1.6
772,019 + MPMX19_03387 0.22 -0.4
772,019 + MPMX19_03387 0.22 -1.6
772,020 - MPMX19_03387 0.22 -0.6
772,163 + MPMX19_03387 0.27 +0.8
772,163 + MPMX19_03387 0.27 +1.2
772,163 + MPMX19_03387 0.27 -0.6
772,163 + MPMX19_03387 0.27 -0.6
772,163 + MPMX19_03387 0.27 +1.3
772,163 + MPMX19_03387 0.27 -0.9
772,163 + MPMX19_03387 0.27 -0.2
772,163 + MPMX19_03387 0.27 +0.3
772,164 - MPMX19_03387 0.27 -2.4
772,164 - MPMX19_03387 0.27 -2.9
772,164 - MPMX19_03387 0.27 -2.1
772,164 - MPMX19_03387 0.27 +1.6
772,164 - MPMX19_03387 0.27 -0.2
772,164 - MPMX19_03387 0.27 +0.1
772,164 - MPMX19_03387 0.27 -0.7
772,164 - MPMX19_03387 0.27 -0.8

Or see this region's nucleotide sequence