Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03352 and MPMX19_03353 are separated by 743 nucleotides MPMX19_03353 and MPMX19_03354 are separated by 128 nucleotides
MPMX19_03352: MPMX19_03352 - hypothetical protein, at 711,758 to 713,119
_03352
MPMX19_03353: MPMX19_03353 - hypothetical protein, at 713,863 to 714,804
_03353
MPMX19_03354: MPMX19_03354 - hypothetical protein, at 714,933 to 716,132
_03354
Position (kb)
713
714
715 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 713.631 kb on - strand at 713.671 kb on - strand at 713.671 kb on - strand at 713.816 kb on + strand at 713.816 kb on + strand at 713.816 kb on + strand at 713.817 kb on - strand at 713.817 kb on - strand at 713.817 kb on - strand at 713.817 kb on - strand at 713.817 kb on - strand at 714.342 kb on - strand, within MPMX19_03353 at 714.577 kb on + strand, within MPMX19_03353 at 714.577 kb on + strand, within MPMX19_03353 at 714.577 kb on + strand, within MPMX19_03353 at 714.577 kb on + strand, within MPMX19_03353 at 714.578 kb on - strand, within MPMX19_03353 at 714.578 kb on - strand, within MPMX19_03353 at 714.578 kb on - strand, within MPMX19_03353 at 714.578 kb on - strand, within MPMX19_03353 at 714.616 kb on + strand, within MPMX19_03353 at 714.616 kb on + strand, within MPMX19_03353 at 714.617 kb on - strand, within MPMX19_03353 at 714.617 kb on - strand, within MPMX19_03353 at 714.617 kb on - strand, within MPMX19_03353 at 714.739 kb on + strand at 714.740 kb on - strand at 714.742 kb on + strand at 714.742 kb on + strand at 714.743 kb on - strand at 714.743 kb on - strand at 714.743 kb on - strand at 714.743 kb on - strand at 714.743 kb on - strand at 714.895 kb on + strand at 714.895 kb on + strand at 714.895 kb on + strand at 714.896 kb on - strand at 714.896 kb on - strand at 714.896 kb on - strand at 714.896 kb on - strand at 714.896 kb on - strand at 714.896 kb on - strand at 714.896 kb on - strand at 714.896 kb on - strand at 714.896 kb on - strand at 714.897 kb on + strand at 714.897 kb on + strand at 714.897 kb on + strand at 714.897 kb on + strand at 714.897 kb on + strand at 714.898 kb on - strand at 714.898 kb on - strand at 714.898 kb on - strand at 714.898 kb on - strand at 714.898 kb on - strand at 714.898 kb on - strand at 714.898 kb on - strand at 714.913 kb on + strand at 714.913 kb on + strand at 714.914 kb on - strand at 714.914 kb on - strand at 715.134 kb on + strand, within MPMX19_03354 at 715.134 kb on + strand, within MPMX19_03354 at 715.134 kb on + strand, within MPMX19_03354 at 715.134 kb on + strand, within MPMX19_03354 at 715.134 kb on + strand, within MPMX19_03354 at 715.134 kb on + strand, within MPMX19_03354 at 715.135 kb on - strand, within MPMX19_03354 at 715.135 kb on - strand, within MPMX19_03354 at 715.135 kb on - strand, within MPMX19_03354 at 715.135 kb on - strand, within MPMX19_03354 at 715.135 kb on - strand, within MPMX19_03354 at 715.135 kb on - strand, within MPMX19_03354 at 715.187 kb on + strand, within MPMX19_03354 at 715.187 kb on + strand, within MPMX19_03354 at 715.188 kb on - strand, within MPMX19_03354 at 715.188 kb on - strand, within MPMX19_03354 at 715.188 kb on - strand, within MPMX19_03354 at 715.380 kb on + strand, within MPMX19_03354 at 715.380 kb on + strand, within MPMX19_03354 at 715.380 kb on + strand, within MPMX19_03354 at 715.380 kb on + strand, within MPMX19_03354 at 715.380 kb on + strand, within MPMX19_03354 at 715.380 kb on + strand, within MPMX19_03354 at 715.380 kb on + strand, within MPMX19_03354 at 715.380 kb on + strand, within MPMX19_03354 at 715.512 kb on + strand, within MPMX19_03354 at 715.512 kb on + strand, within MPMX19_03354 at 715.512 kb on + strand, within MPMX19_03354 at 715.512 kb on + strand, within MPMX19_03354 at 715.512 kb on + strand, within MPMX19_03354 at 715.512 kb on + strand, within MPMX19_03354 at 715.512 kb on + strand, within MPMX19_03354 at 715.512 kb on + strand, within MPMX19_03354 at 715.513 kb on - strand, within MPMX19_03354 at 715.513 kb on - strand, within MPMX19_03354 at 715.513 kb on - strand, within MPMX19_03354 at 715.513 kb on - strand, within MPMX19_03354 at 715.513 kb on - strand, within MPMX19_03354 at 715.513 kb on - strand, within MPMX19_03354 at 715.513 kb on - strand, within MPMX19_03354 at 715.611 kb on + strand, within MPMX19_03354 at 715.611 kb on + strand, within MPMX19_03354 at 715.611 kb on + strand, within MPMX19_03354 at 715.650 kb on + strand, within MPMX19_03354 at 715.650 kb on + strand, within MPMX19_03354 at 715.650 kb on + strand, within MPMX19_03354 at 715.651 kb on - strand, within MPMX19_03354 at 715.651 kb on - strand, within MPMX19_03354
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 713,631 - -1.5 713,671 - -0.7 713,671 - -0.6 713,816 + -0.2 713,816 + -0.6 713,816 + -0.9 713,817 - +0.3 713,817 - -0.8 713,817 - -0.5 713,817 - -0.8 713,817 - +0.5 714,342 - MPMX19_03353 0.51 +0.2 714,577 + MPMX19_03353 0.76 -0.4 714,577 + MPMX19_03353 0.76 +0.2 714,577 + MPMX19_03353 0.76 -1.1 714,577 + MPMX19_03353 0.76 +1.5 714,578 - MPMX19_03353 0.76 -1.0 714,578 - MPMX19_03353 0.76 -0.8 714,578 - MPMX19_03353 0.76 +0.8 714,578 - MPMX19_03353 0.76 -0.9 714,616 + MPMX19_03353 0.80 -1.0 714,616 + MPMX19_03353 0.80 -1.6 714,617 - MPMX19_03353 0.80 +0.1 714,617 - MPMX19_03353 0.80 -1.0 714,617 - MPMX19_03353 0.80 -1.5 714,739 + -1.5 714,740 - -0.6 714,742 + -0.9 714,742 + -0.6 714,743 - -1.0 714,743 - -0.6 714,743 - -0.0 714,743 - -1.5 714,743 - -0.4 714,895 + -0.3 714,895 + -0.6 714,895 + -0.8 714,896 - -1.0 714,896 - -0.2 714,896 - +0.2 714,896 - +0.7 714,896 - +0.5 714,896 - +0.5 714,896 - -0.8 714,896 - -0.2 714,896 - -0.6 714,897 + +0.4 714,897 + -0.1 714,897 + +0.2 714,897 + -0.0 714,897 + -1.6 714,898 - -0.8 714,898 - +0.8 714,898 - -0.8 714,898 - +1.1 714,898 - +0.5 714,898 - -1.0 714,898 - -0.3 714,913 + -1.2 714,913 + -0.0 714,914 - -1.1 714,914 - -0.5 715,134 + MPMX19_03354 0.17 +1.5 715,134 + MPMX19_03354 0.17 -1.8 715,134 + MPMX19_03354 0.17 +1.0 715,134 + MPMX19_03354 0.17 -0.9 715,134 + MPMX19_03354 0.17 -0.5 715,134 + MPMX19_03354 0.17 +0.3 715,135 - MPMX19_03354 0.17 -0.5 715,135 - MPMX19_03354 0.17 -1.3 715,135 - MPMX19_03354 0.17 -1.2 715,135 - MPMX19_03354 0.17 +0.7 715,135 - MPMX19_03354 0.17 +1.1 715,135 - MPMX19_03354 0.17 -0.2 715,187 + MPMX19_03354 0.21 -0.3 715,187 + MPMX19_03354 0.21 -1.3 715,188 - MPMX19_03354 0.21 +0.6 715,188 - MPMX19_03354 0.21 -2.0 715,188 - MPMX19_03354 0.21 +0.7 715,380 + MPMX19_03354 0.37 -3.3 715,380 + MPMX19_03354 0.37 -1.1 715,380 + MPMX19_03354 0.37 +0.9 715,380 + MPMX19_03354 0.37 -0.3 715,380 + MPMX19_03354 0.37 -1.5 715,380 + MPMX19_03354 0.37 -0.3 715,380 + MPMX19_03354 0.37 -1.3 715,380 + MPMX19_03354 0.37 +0.1 715,512 + MPMX19_03354 0.48 -0.5 715,512 + MPMX19_03354 0.48 -1.6 715,512 + MPMX19_03354 0.48 -0.5 715,512 + MPMX19_03354 0.48 -0.0 715,512 + MPMX19_03354 0.48 -1.4 715,512 + MPMX19_03354 0.48 +0.7 715,512 + MPMX19_03354 0.48 -0.3 715,512 + MPMX19_03354 0.48 -0.0 715,513 - MPMX19_03354 0.48 -1.5 715,513 - MPMX19_03354 0.48 +1.5 715,513 - MPMX19_03354 0.48 +0.7 715,513 - MPMX19_03354 0.48 -0.6 715,513 - MPMX19_03354 0.48 -2.0 715,513 - MPMX19_03354 0.48 -0.3 715,513 - MPMX19_03354 0.48 -1.5 715,611 + MPMX19_03354 0.56 -0.3 715,611 + MPMX19_03354 0.56 +0.2 715,611 + MPMX19_03354 0.56 -2.0 715,650 + MPMX19_03354 0.60 -0.5 715,650 + MPMX19_03354 0.60 -2.2 715,650 + MPMX19_03354 0.60 +0.4 715,651 - MPMX19_03354 0.60 -0.2 715,651 - MPMX19_03354 0.60 +0.3
Or see this region's nucleotide sequence