Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03343

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03341 and MPMX19_03342 are separated by 19 nucleotidesMPMX19_03342 and MPMX19_03343 overlap by 4 nucleotidesMPMX19_03343 and MPMX19_03344 are separated by 49 nucleotides MPMX19_03341: MPMX19_03341 - Cobalt-zinc-cadmium resistance protein CzcA, at 697,136 to 700,249 _03341 MPMX19_03342: MPMX19_03342 - hypothetical protein, at 700,269 to 700,505 _03342 MPMX19_03343: MPMX19_03343 - hypothetical protein, at 700,502 to 701,356 _03343 MPMX19_03344: MPMX19_03344 - 3-[(3aS,4S,7aS)-7a-methyl-1, 5-dioxo-octahydro-1H-inden-4-yl]propanoyl:CoA ligase, at 701,406 to 703,115 _03344 Position (kb) 700 701 702Strain fitness (log2 ratio) -2 -1 0 1 2 3at 699.653 kb on + strand, within MPMX19_03341at 699.658 kb on + strand, within MPMX19_03341at 699.658 kb on + strand, within MPMX19_03341at 699.659 kb on - strand, within MPMX19_03341at 699.659 kb on - strand, within MPMX19_03341at 699.659 kb on - strand, within MPMX19_03341at 699.659 kb on - strand, within MPMX19_03341at 699.753 kb on + strand, within MPMX19_03341at 699.753 kb on + strand, within MPMX19_03341at 699.753 kb on + strand, within MPMX19_03341at 699.753 kb on + strand, within MPMX19_03341at 699.753 kb on + strand, within MPMX19_03341at 699.753 kb on + strand, within MPMX19_03341at 699.753 kb on + strand, within MPMX19_03341at 699.753 kb on + strand, within MPMX19_03341at 699.753 kb on + strand, within MPMX19_03341at 699.753 kb on + strand, within MPMX19_03341at 699.754 kb on - strand, within MPMX19_03341at 699.755 kb on + strand, within MPMX19_03341at 699.755 kb on + strand, within MPMX19_03341at 699.756 kb on - strand, within MPMX19_03341at 699.756 kb on - strand, within MPMX19_03341at 700.076 kb on - strandat 700.076 kb on - strandat 700.362 kb on + strand, within MPMX19_03342at 700.362 kb on + strand, within MPMX19_03342at 700.362 kb on + strand, within MPMX19_03342at 700.363 kb on - strand, within MPMX19_03342at 700.363 kb on - strand, within MPMX19_03342at 700.375 kb on - strand, within MPMX19_03342at 700.375 kb on - strand, within MPMX19_03342at 700.775 kb on + strand, within MPMX19_03343at 700.775 kb on + strand, within MPMX19_03343at 700.775 kb on + strand, within MPMX19_03343at 700.775 kb on + strand, within MPMX19_03343at 700.775 kb on + strand, within MPMX19_03343at 700.775 kb on + strand, within MPMX19_03343at 700.775 kb on + strand, within MPMX19_03343at 700.775 kb on + strand, within MPMX19_03343at 700.775 kb on + strand, within MPMX19_03343at 700.775 kb on + strand, within MPMX19_03343at 700.775 kb on + strand, within MPMX19_03343at 700.776 kb on - strand, within MPMX19_03343at 700.776 kb on - strand, within MPMX19_03343at 700.776 kb on - strand, within MPMX19_03343at 700.776 kb on - strand, within MPMX19_03343at 700.776 kb on - strand, within MPMX19_03343at 700.776 kb on - strand, within MPMX19_03343at 700.777 kb on + strand, within MPMX19_03343at 700.777 kb on + strand, within MPMX19_03343at 700.777 kb on + strand, within MPMX19_03343at 700.777 kb on + strand, within MPMX19_03343at 700.777 kb on + strand, within MPMX19_03343at 700.777 kb on + strand, within MPMX19_03343at 700.777 kb on + strand, within MPMX19_03343at 700.778 kb on - strand, within MPMX19_03343at 700.778 kb on - strand, within MPMX19_03343at 700.778 kb on - strand, within MPMX19_03343at 701.053 kb on + strand, within MPMX19_03343at 701.053 kb on + strand, within MPMX19_03343at 701.053 kb on + strand, within MPMX19_03343at 701.053 kb on + strand, within MPMX19_03343at 701.053 kb on + strand, within MPMX19_03343at 701.053 kb on + strand, within MPMX19_03343at 701.053 kb on + strand, within MPMX19_03343at 701.053 kb on + strand, within MPMX19_03343at 701.054 kb on - strand, within MPMX19_03343at 701.054 kb on - strand, within MPMX19_03343at 701.054 kb on - strand, within MPMX19_03343at 701.054 kb on - strand, within MPMX19_03343at 701.054 kb on - strand, within MPMX19_03343at 701.309 kb on + strandat 701.309 kb on + strandat 701.309 kb on + strandat 701.309 kb on + strandat 701.309 kb on + strandat 701.309 kb on + strandat 701.310 kb on - strandat 701.310 kb on - strandat 701.310 kb on - strandat 701.310 kb on - strandat 701.310 kb on - strandat 701.310 kb on - strandat 701.310 kb on - strandat 701.310 kb on - strandat 701.352 kb on + strandat 701.352 kb on + strandat 701.352 kb on + strandat 701.352 kb on + strandat 701.353 kb on - strandat 701.353 kb on - strandat 701.518 kb on + strandat 701.519 kb on - strandat 701.519 kb on - strandat 701.519 kb on - strandat 701.519 kb on - strandat 701.519 kb on - strandat 701.519 kb on - strandat 701.519 kb on - strandat 701.533 kb on + strandat 701.533 kb on + strandat 701.533 kb on + strandat 701.534 kb on - strandat 701.534 kb on - strandat 701.534 kb on - strandat 701.534 kb on - strandat 701.629 kb on + strand, within MPMX19_03344at 701.629 kb on + strand, within MPMX19_03344at 701.630 kb on - strand, within MPMX19_03344at 701.683 kb on + strand, within MPMX19_03344at 701.683 kb on + strand, within MPMX19_03344at 701.683 kb on + strand, within MPMX19_03344at 701.683 kb on - strand, within MPMX19_03344at 701.684 kb on - strand, within MPMX19_03344at 701.684 kb on - strand, within MPMX19_03344at 701.684 kb on - strand, within MPMX19_03344at 701.684 kb on - strand, within MPMX19_03344at 701.684 kb on - strand, within MPMX19_03344at 701.684 kb on - strand, within MPMX19_03344at 701.684 kb on - strand, within MPMX19_03344at 701.710 kb on + strand, within MPMX19_03344at 701.710 kb on + strand, within MPMX19_03344at 701.710 kb on + strand, within MPMX19_03344at 701.711 kb on - strand, within MPMX19_03344at 701.711 kb on - strand, within MPMX19_03344at 701.711 kb on - strand, within MPMX19_03344at 701.711 kb on - strand, within MPMX19_03344at 701.711 kb on - strand, within MPMX19_03344at 701.711 kb on - strand, within MPMX19_03344at 701.711 kb on - strand, within MPMX19_03344at 701.711 kb on - strand, within MPMX19_03344at 701.711 kb on - strand, within MPMX19_03344at 701.767 kb on + strand, within MPMX19_03344at 701.767 kb on + strand, within MPMX19_03344at 701.768 kb on - strand, within MPMX19_03344at 701.768 kb on - strand, within MPMX19_03344at 701.768 kb on - strand, within MPMX19_03344at 701.857 kb on + strand, within MPMX19_03344at 701.858 kb on - strand, within MPMX19_03344at 701.875 kb on + strand, within MPMX19_03344at 701.876 kb on - strand, within MPMX19_03344at 702.155 kb on - strand, within MPMX19_03344at 702.155 kb on - strand, within MPMX19_03344at 702.340 kb on + strand, within MPMX19_03344at 702.340 kb on + strand, within MPMX19_03344at 702.340 kb on + strand, within MPMX19_03344at 702.340 kb on + strand, within MPMX19_03344at 702.340 kb on + strand, within MPMX19_03344at 702.340 kb on + strand, within MPMX19_03344at 702.340 kb on + strand, within MPMX19_03344at 702.340 kb on + strand, within MPMX19_03344at 702.340 kb on + strand, within MPMX19_03344at 702.340 kb on + strand, within MPMX19_03344at 702.340 kb on + strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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699,653 + MPMX19_03341 0.81 +0.4
699,658 + MPMX19_03341 0.81 -1.6
699,658 + MPMX19_03341 0.81 -2.0
699,659 - MPMX19_03341 0.81 -1.3
699,659 - MPMX19_03341 0.81 -1.3
699,659 - MPMX19_03341 0.81 -0.5
699,659 - MPMX19_03341 0.81 -2.2
699,753 + MPMX19_03341 0.84 +0.8
699,753 + MPMX19_03341 0.84 +0.4
699,753 + MPMX19_03341 0.84 -0.5
699,753 + MPMX19_03341 0.84 +1.7
699,753 + MPMX19_03341 0.84 -1.3
699,753 + MPMX19_03341 0.84 -1.3
699,753 + MPMX19_03341 0.84 -1.3
699,753 + MPMX19_03341 0.84 -0.5
699,753 + MPMX19_03341 0.84 +0.0
699,753 + MPMX19_03341 0.84 +0.1
699,754 - MPMX19_03341 0.84 +0.8
699,755 + MPMX19_03341 0.84 -1.1
699,755 + MPMX19_03341 0.84 -1.3
699,756 - MPMX19_03341 0.84 +0.1
699,756 - MPMX19_03341 0.84 -0.3
700,076 - -2.0
700,076 - -0.7
700,362 + MPMX19_03342 0.39 +0.3
700,362 + MPMX19_03342 0.39 +0.7
700,362 + MPMX19_03342 0.39 -0.3
700,363 - MPMX19_03342 0.40 +0.4
700,363 - MPMX19_03342 0.40 -0.2
700,375 - MPMX19_03342 0.45 -0.3
700,375 - MPMX19_03342 0.45 -0.6
700,775 + MPMX19_03343 0.32 -1.7
700,775 + MPMX19_03343 0.32 -0.8
700,775 + MPMX19_03343 0.32 +0.4
700,775 + MPMX19_03343 0.32 -0.4
700,775 + MPMX19_03343 0.32 +0.1
700,775 + MPMX19_03343 0.32 -0.2
700,775 + MPMX19_03343 0.32 -0.3
700,775 + MPMX19_03343 0.32 -0.9
700,775 + MPMX19_03343 0.32 -1.4
700,775 + MPMX19_03343 0.32 -1.0
700,775 + MPMX19_03343 0.32 -0.1
700,776 - MPMX19_03343 0.32 -0.4
700,776 - MPMX19_03343 0.32 +1.2
700,776 - MPMX19_03343 0.32 -2.2
700,776 - MPMX19_03343 0.32 -0.0
700,776 - MPMX19_03343 0.32 -0.3
700,776 - MPMX19_03343 0.32 +1.0
700,777 + MPMX19_03343 0.32 -1.6
700,777 + MPMX19_03343 0.32 -0.1
700,777 + MPMX19_03343 0.32 -0.5
700,777 + MPMX19_03343 0.32 -1.3
700,777 + MPMX19_03343 0.32 +1.1
700,777 + MPMX19_03343 0.32 +0.6
700,777 + MPMX19_03343 0.32 -1.0
700,778 - MPMX19_03343 0.32 -2.0
700,778 - MPMX19_03343 0.32 +0.1
700,778 - MPMX19_03343 0.32 -1.2
701,053 + MPMX19_03343 0.64 +0.5
701,053 + MPMX19_03343 0.64 -0.9
701,053 + MPMX19_03343 0.64 -0.2
701,053 + MPMX19_03343 0.64 -2.2
701,053 + MPMX19_03343 0.64 -0.7
701,053 + MPMX19_03343 0.64 -1.5
701,053 + MPMX19_03343 0.64 -0.6
701,053 + MPMX19_03343 0.64 +2.3
701,054 - MPMX19_03343 0.65 -1.2
701,054 - MPMX19_03343 0.65 -1.0
701,054 - MPMX19_03343 0.65 -0.9
701,054 - MPMX19_03343 0.65 +0.8
701,054 - MPMX19_03343 0.65 -0.5
701,309 + +0.1
701,309 + -1.4
701,309 + +0.4
701,309 + +0.1
701,309 + -0.5
701,309 + -1.8
701,310 - +1.0
701,310 - -0.7
701,310 - -0.1
701,310 - -0.5
701,310 - +0.5
701,310 - -0.7
701,310 - -2.1
701,310 - -2.0
701,352 + -0.6
701,352 + -0.2
701,352 + +0.5
701,352 + -0.6
701,353 - -1.5
701,353 - -0.5
701,518 + +0.5
701,519 - -0.3
701,519 - +3.1
701,519 - -0.5
701,519 - +0.2
701,519 - -2.0
701,519 - +0.3
701,519 - +1.0
701,533 + -1.3
701,533 + -0.3
701,533 + -1.5
701,534 - -0.8
701,534 - -1.0
701,534 - -0.9
701,534 - +0.7
701,629 + MPMX19_03344 0.13 +0.3
701,629 + MPMX19_03344 0.13 -0.9
701,630 - MPMX19_03344 0.13 -0.8
701,683 + MPMX19_03344 0.16 -0.5
701,683 + MPMX19_03344 0.16 -0.2
701,683 + MPMX19_03344 0.16 -0.8
701,683 - MPMX19_03344 0.16 -0.5
701,684 - MPMX19_03344 0.16 -1.0
701,684 - MPMX19_03344 0.16 -0.5
701,684 - MPMX19_03344 0.16 +1.4
701,684 - MPMX19_03344 0.16 +0.4
701,684 - MPMX19_03344 0.16 -0.6
701,684 - MPMX19_03344 0.16 -0.8
701,684 - MPMX19_03344 0.16 -0.3
701,710 + MPMX19_03344 0.18 +0.7
701,710 + MPMX19_03344 0.18 -0.5
701,710 + MPMX19_03344 0.18 -0.2
701,711 - MPMX19_03344 0.18 -0.4
701,711 - MPMX19_03344 0.18 +0.4
701,711 - MPMX19_03344 0.18 -1.0
701,711 - MPMX19_03344 0.18 +0.7
701,711 - MPMX19_03344 0.18 -0.7
701,711 - MPMX19_03344 0.18 -0.7
701,711 - MPMX19_03344 0.18 +0.2
701,711 - MPMX19_03344 0.18 -1.3
701,711 - MPMX19_03344 0.18 -0.2
701,767 + MPMX19_03344 0.21 -1.8
701,767 + MPMX19_03344 0.21 +0.7
701,768 - MPMX19_03344 0.21 +0.5
701,768 - MPMX19_03344 0.21 -1.3
701,768 - MPMX19_03344 0.21 -1.6
701,857 + MPMX19_03344 0.26 -1.4
701,858 - MPMX19_03344 0.26 -0.3
701,875 + MPMX19_03344 0.27 -1.1
701,876 - MPMX19_03344 0.27 -0.2
702,155 - MPMX19_03344 0.44 -0.0
702,155 - MPMX19_03344 0.44 -1.2
702,340 + MPMX19_03344 0.55 +0.2
702,340 + MPMX19_03344 0.55 -1.5
702,340 + MPMX19_03344 0.55 +1.5
702,340 + MPMX19_03344 0.55 -2.0
702,340 + MPMX19_03344 0.55 -0.3
702,340 + MPMX19_03344 0.55 -0.8
702,340 + MPMX19_03344 0.55 -0.5
702,340 + MPMX19_03344 0.55 -1.0
702,340 + MPMX19_03344 0.55 -0.7
702,340 + MPMX19_03344 0.55 +0.1
702,340 + MPMX19_03344 0.55 -0.9
702,341 - MPMX19_03344 0.55 -0.3
702,341 - MPMX19_03344 0.55 -0.7
702,341 - MPMX19_03344 0.55 +1.1
702,341 - MPMX19_03344 0.55 -1.3
702,341 - MPMX19_03344 0.55 -1.3
702,341 - MPMX19_03344 0.55 -2.0
702,341 - MPMX19_03344 0.55 +1.5
702,341 - MPMX19_03344 0.55 -0.3
702,341 - MPMX19_03344 0.55 -1.3
702,341 - MPMX19_03344 0.55 +0.8
702,341 - MPMX19_03344 0.55 +0.5
702,341 - MPMX19_03344 0.55 +1.0
702,341 - MPMX19_03344 0.55 -1.5
702,341 - MPMX19_03344 0.55 -0.4

Or see this region's nucleotide sequence