Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03339

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03338 and MPMX19_03339 are separated by 651 nucleotidesMPMX19_03339 and MPMX19_03340 are separated by 91 nucleotidesMPMX19_03340 and MPMX19_03341 are separated by 49 nucleotides MPMX19_03338: MPMX19_03338 - hypothetical protein, at 692,946 to 693,896 _03338 MPMX19_03339: MPMX19_03339 - hypothetical protein, at 694,548 to 696,389 _03339 MPMX19_03340: MPMX19_03340 - hypothetical protein, at 696,481 to 697,086 _03340 MPMX19_03341: MPMX19_03341 - Cobalt-zinc-cadmium resistance protein CzcA, at 697,136 to 700,249 _03341 Position (kb) 694 695 696 697Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 693.715 kb on + strand, within MPMX19_03338at 693.716 kb on - strand, within MPMX19_03338at 693.716 kb on - strand, within MPMX19_03338at 693.716 kb on - strand, within MPMX19_03338at 693.896 kb on + strandat 693.896 kb on + strandat 693.896 kb on + strandat 693.896 kb on + strandat 693.896 kb on + strandat 693.897 kb on - strandat 693.897 kb on - strandat 693.897 kb on - strandat 693.897 kb on - strandat 693.931 kb on + strandat 693.931 kb on + strandat 693.932 kb on - strandat 693.932 kb on - strandat 693.932 kb on - strandat 694.071 kb on - strandat 694.176 kb on + strandat 694.239 kb on - strandat 694.308 kb on + strandat 694.397 kb on + strandat 694.480 kb on + strandat 694.545 kb on + strandat 694.545 kb on + strandat 694.545 kb on + strandat 694.546 kb on - strandat 694.546 kb on - strandat 694.989 kb on + strand, within MPMX19_03339at 694.989 kb on + strand, within MPMX19_03339at 694.989 kb on + strand, within MPMX19_03339at 694.989 kb on + strand, within MPMX19_03339at 694.989 kb on + strand, within MPMX19_03339at 694.989 kb on + strand, within MPMX19_03339at 694.989 kb on + strand, within MPMX19_03339at 694.989 kb on + strand, within MPMX19_03339at 694.989 kb on + strand, within MPMX19_03339at 694.989 kb on + strand, within MPMX19_03339at 694.989 kb on + strand, within MPMX19_03339at 694.990 kb on - strand, within MPMX19_03339at 694.990 kb on - strand, within MPMX19_03339at 694.990 kb on - strand, within MPMX19_03339at 694.990 kb on - strand, within MPMX19_03339at 694.990 kb on - strand, within MPMX19_03339at 694.990 kb on - strand, within MPMX19_03339at 694.990 kb on - strand, within MPMX19_03339at 694.990 kb on - strand, within MPMX19_03339at 694.990 kb on - strand, within MPMX19_03339at 694.990 kb on - strand, within MPMX19_03339at 694.990 kb on - strand, within MPMX19_03339at 694.990 kb on - strand, within MPMX19_03339at 694.990 kb on - strand, within MPMX19_03339at 694.990 kb on - strand, within MPMX19_03339at 694.990 kb on - strand, within MPMX19_03339at 694.990 kb on - strand, within MPMX19_03339at 694.990 kb on - strand, within MPMX19_03339at 694.990 kb on - strand, within MPMX19_03339at 694.990 kb on - strand, within MPMX19_03339at 694.990 kb on - strand, within MPMX19_03339at 694.990 kb on - strand, within MPMX19_03339at 694.990 kb on - strand, within MPMX19_03339at 694.991 kb on + strand, within MPMX19_03339at 694.991 kb on + strand, within MPMX19_03339at 694.991 kb on + strand, within MPMX19_03339at 694.991 kb on + strand, within MPMX19_03339at 694.991 kb on + strand, within MPMX19_03339at 694.991 kb on + strand, within MPMX19_03339at 694.991 kb on + strand, within MPMX19_03339at 694.992 kb on - strand, within MPMX19_03339at 694.992 kb on - strand, within MPMX19_03339at 694.992 kb on - strand, within MPMX19_03339at 694.992 kb on - strand, within MPMX19_03339at 694.992 kb on - strand, within MPMX19_03339at 694.992 kb on - strand, within MPMX19_03339at 695.040 kb on + strand, within MPMX19_03339at 695.040 kb on + strand, within MPMX19_03339at 695.040 kb on + strand, within MPMX19_03339at 695.040 kb on + strand, within MPMX19_03339at 695.040 kb on + strand, within MPMX19_03339at 695.040 kb on + strand, within MPMX19_03339at 695.040 kb on + strand, within MPMX19_03339at 695.040 kb on + strand, within MPMX19_03339at 695.040 kb on + strand, within MPMX19_03339at 695.041 kb on - strand, within MPMX19_03339at 695.041 kb on - strand, within MPMX19_03339at 695.041 kb on - strand, within MPMX19_03339at 695.041 kb on - strand, within MPMX19_03339at 695.041 kb on - strand, within MPMX19_03339at 695.041 kb on - strand, within MPMX19_03339at 695.041 kb on - strand, within MPMX19_03339at 695.041 kb on - strand, within MPMX19_03339at 695.041 kb on - strand, within MPMX19_03339at 695.041 kb on - strand, within MPMX19_03339at 695.041 kb on - strand, within MPMX19_03339at 695.042 kb on + strand, within MPMX19_03339at 695.042 kb on + strand, within MPMX19_03339at 695.042 kb on + strand, within MPMX19_03339at 695.042 kb on + strand, within MPMX19_03339at 695.042 kb on + strand, within MPMX19_03339at 695.042 kb on + strand, within MPMX19_03339at 695.042 kb on + strand, within MPMX19_03339at 695.042 kb on + strand, within MPMX19_03339at 695.042 kb on + strand, within MPMX19_03339at 695.042 kb on + strand, within MPMX19_03339at 695.042 kb on + strand, within MPMX19_03339at 695.042 kb on + strand, within MPMX19_03339at 695.042 kb on + strand, within MPMX19_03339at 695.042 kb on + strand, within MPMX19_03339at 695.043 kb on - strand, within MPMX19_03339at 695.043 kb on - strand, within MPMX19_03339at 695.043 kb on - strand, within MPMX19_03339at 695.043 kb on - strand, within MPMX19_03339at 695.043 kb on - strand, within MPMX19_03339at 695.043 kb on - strand, within MPMX19_03339at 695.043 kb on - strand, within MPMX19_03339at 695.043 kb on - strand, within MPMX19_03339at 695.043 kb on - strand, within MPMX19_03339at 695.043 kb on - strand, within MPMX19_03339at 695.043 kb on - strand, within MPMX19_03339at 695.043 kb on - strand, within MPMX19_03339at 695.043 kb on - strand, within MPMX19_03339at 695.043 kb on - strand, within MPMX19_03339at 695.043 kb on - strand, within MPMX19_03339at 695.043 kb on - strand, within MPMX19_03339at 695.409 kb on + strand, within MPMX19_03339at 695.409 kb on + strand, within MPMX19_03339at 695.409 kb on + strand, within MPMX19_03339at 695.409 kb on + strand, within MPMX19_03339at 695.409 kb on + strand, within MPMX19_03339at 695.409 kb on + strand, within MPMX19_03339at 695.409 kb on + strand, within MPMX19_03339at 695.409 kb on + strand, within MPMX19_03339at 695.409 kb on + strand, within MPMX19_03339at 695.410 kb on - strand, within MPMX19_03339at 695.410 kb on - strand, within MPMX19_03339at 695.625 kb on + strand, within MPMX19_03339at 695.625 kb on + strand, within MPMX19_03339at 695.625 kb on + strand, within MPMX19_03339at 695.625 kb on + strand, within MPMX19_03339at 695.626 kb on - strand, within MPMX19_03339at 695.626 kb on - strand, within MPMX19_03339at 696.278 kb on + strandat 696.278 kb on + strandat 696.278 kb on + strandat 696.278 kb on + strandat 696.278 kb on + strandat 696.278 kb on + strandat 696.279 kb on - strandat 696.279 kb on - strandat 696.279 kb on - strandat 696.279 kb on - strandat 696.279 kb on - strandat 696.388 kb on - strandat 696.465 kb on + strandat 696.465 kb on + strandat 696.465 kb on + strandat 696.466 kb on - strandat 696.466 kb on - strandat 696.466 kb on - strandat 696.466 kb on - strandat 696.466 kb on - strandat 696.466 kb on - strandat 696.746 kb on - strand, within MPMX19_03340at 696.835 kb on + strand, within MPMX19_03340at 696.836 kb on - strand, within MPMX19_03340at 696.836 kb on - strand, within MPMX19_03340at 696.836 kb on - strand, within MPMX19_03340at 696.851 kb on - strand, within MPMX19_03340at 696.851 kb on - strand, within MPMX19_03340at 696.851 kb on - strand, within MPMX19_03340at 697.334 kb on + strandat 697.335 kb on - strandat 697.335 kb on - strandat 697.335 kb on - strandat 697.335 kb on - strandat 697.360 kb on + strandat 697.360 kb on + strandat 697.361 kb on - strandat 697.361 kb on - strandat 697.361 kb on - strandat 697.361 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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693,715 + MPMX19_03338 0.81 -0.9
693,716 - MPMX19_03338 0.81 +0.2
693,716 - MPMX19_03338 0.81 -0.2
693,716 - MPMX19_03338 0.81 +0.1
693,896 + -0.2
693,896 + -0.8
693,896 + +0.4
693,896 + -1.0
693,896 + -0.8
693,897 - -0.3
693,897 - -0.1
693,897 - -2.0
693,897 - -0.3
693,931 + +0.8
693,931 + -0.6
693,932 - -0.8
693,932 - -1.6
693,932 - +0.7
694,071 - -0.0
694,176 + -1.2
694,239 - -1.6
694,308 + +1.0
694,397 + +0.7
694,480 + +0.4
694,545 + -0.8
694,545 + -0.7
694,545 + -1.8
694,546 - -1.0
694,546 - -0.3
694,989 + MPMX19_03339 0.24 -0.6
694,989 + MPMX19_03339 0.24 -0.3
694,989 + MPMX19_03339 0.24 +0.2
694,989 + MPMX19_03339 0.24 +1.2
694,989 + MPMX19_03339 0.24 -1.2
694,989 + MPMX19_03339 0.24 -1.3
694,989 + MPMX19_03339 0.24 -0.5
694,989 + MPMX19_03339 0.24 +0.1
694,989 + MPMX19_03339 0.24 -0.3
694,989 + MPMX19_03339 0.24 -0.2
694,989 + MPMX19_03339 0.24 +1.0
694,990 - MPMX19_03339 0.24 +0.2
694,990 - MPMX19_03339 0.24 -0.9
694,990 - MPMX19_03339 0.24 -0.0
694,990 - MPMX19_03339 0.24 -1.1
694,990 - MPMX19_03339 0.24 +0.3
694,990 - MPMX19_03339 0.24 +0.4
694,990 - MPMX19_03339 0.24 -0.7
694,990 - MPMX19_03339 0.24 -0.1
694,990 - MPMX19_03339 0.24 +1.1
694,990 - MPMX19_03339 0.24 +0.3
694,990 - MPMX19_03339 0.24 +0.2
694,990 - MPMX19_03339 0.24 +0.4
694,990 - MPMX19_03339 0.24 +0.5
694,990 - MPMX19_03339 0.24 -0.0
694,990 - MPMX19_03339 0.24 -1.8
694,990 - MPMX19_03339 0.24 -0.7
694,990 - MPMX19_03339 0.24 +1.1
694,990 - MPMX19_03339 0.24 -0.0
694,990 - MPMX19_03339 0.24 +1.4
694,990 - MPMX19_03339 0.24 +0.7
694,990 - MPMX19_03339 0.24 +0.7
694,990 - MPMX19_03339 0.24 -1.5
694,991 + MPMX19_03339 0.24 +1.0
694,991 + MPMX19_03339 0.24 -1.2
694,991 + MPMX19_03339 0.24 -1.9
694,991 + MPMX19_03339 0.24 -2.3
694,991 + MPMX19_03339 0.24 -1.7
694,991 + MPMX19_03339 0.24 -0.0
694,991 + MPMX19_03339 0.24 +0.4
694,992 - MPMX19_03339 0.24 -0.8
694,992 - MPMX19_03339 0.24 -1.0
694,992 - MPMX19_03339 0.24 +0.3
694,992 - MPMX19_03339 0.24 +0.7
694,992 - MPMX19_03339 0.24 +1.8
694,992 - MPMX19_03339 0.24 -0.3
695,040 + MPMX19_03339 0.27 -0.9
695,040 + MPMX19_03339 0.27 +2.0
695,040 + MPMX19_03339 0.27 -1.5
695,040 + MPMX19_03339 0.27 +0.5
695,040 + MPMX19_03339 0.27 +0.1
695,040 + MPMX19_03339 0.27 -0.5
695,040 + MPMX19_03339 0.27 +0.2
695,040 + MPMX19_03339 0.27 -1.1
695,040 + MPMX19_03339 0.27 -1.3
695,041 - MPMX19_03339 0.27 -0.3
695,041 - MPMX19_03339 0.27 -0.7
695,041 - MPMX19_03339 0.27 -0.5
695,041 - MPMX19_03339 0.27 +1.1
695,041 - MPMX19_03339 0.27 -1.3
695,041 - MPMX19_03339 0.27 -1.2
695,041 - MPMX19_03339 0.27 +0.4
695,041 - MPMX19_03339 0.27 -0.1
695,041 - MPMX19_03339 0.27 +0.9
695,041 - MPMX19_03339 0.27 -0.6
695,041 - MPMX19_03339 0.27 -0.0
695,042 + MPMX19_03339 0.27 -1.1
695,042 + MPMX19_03339 0.27 -0.5
695,042 + MPMX19_03339 0.27 -1.2
695,042 + MPMX19_03339 0.27 -1.8
695,042 + MPMX19_03339 0.27 -0.9
695,042 + MPMX19_03339 0.27 -2.8
695,042 + MPMX19_03339 0.27 +0.2
695,042 + MPMX19_03339 0.27 +0.8
695,042 + MPMX19_03339 0.27 -1.0
695,042 + MPMX19_03339 0.27 +0.1
695,042 + MPMX19_03339 0.27 -1.8
695,042 + MPMX19_03339 0.27 -0.3
695,042 + MPMX19_03339 0.27 -0.0
695,042 + MPMX19_03339 0.27 -0.5
695,043 - MPMX19_03339 0.27 -0.8
695,043 - MPMX19_03339 0.27 +0.1
695,043 - MPMX19_03339 0.27 -0.4
695,043 - MPMX19_03339 0.27 +0.8
695,043 - MPMX19_03339 0.27 -0.2
695,043 - MPMX19_03339 0.27 -0.0
695,043 - MPMX19_03339 0.27 -0.8
695,043 - MPMX19_03339 0.27 +0.9
695,043 - MPMX19_03339 0.27 -1.9
695,043 - MPMX19_03339 0.27 -0.6
695,043 - MPMX19_03339 0.27 +0.8
695,043 - MPMX19_03339 0.27 -0.4
695,043 - MPMX19_03339 0.27 -0.5
695,043 - MPMX19_03339 0.27 +0.2
695,043 - MPMX19_03339 0.27 +0.8
695,043 - MPMX19_03339 0.27 -0.9
695,409 + MPMX19_03339 0.47 -0.9
695,409 + MPMX19_03339 0.47 -1.8
695,409 + MPMX19_03339 0.47 +0.8
695,409 + MPMX19_03339 0.47 -1.6
695,409 + MPMX19_03339 0.47 -1.0
695,409 + MPMX19_03339 0.47 -2.5
695,409 + MPMX19_03339 0.47 -0.8
695,409 + MPMX19_03339 0.47 -0.3
695,409 + MPMX19_03339 0.47 +0.5
695,410 - MPMX19_03339 0.47 -1.1
695,410 - MPMX19_03339 0.47 -1.0
695,625 + MPMX19_03339 0.58 -0.5
695,625 + MPMX19_03339 0.58 -0.5
695,625 + MPMX19_03339 0.58 +0.8
695,625 + MPMX19_03339 0.58 -0.8
695,626 - MPMX19_03339 0.59 -1.1
695,626 - MPMX19_03339 0.59 -0.3
696,278 + +0.2
696,278 + -0.6
696,278 + -0.5
696,278 + +0.2
696,278 + -0.0
696,278 + -0.6
696,279 - -0.6
696,279 - +0.5
696,279 - +0.1
696,279 - -1.3
696,279 - -1.9
696,388 - +0.2
696,465 + +1.2
696,465 + -0.0
696,465 + -0.2
696,466 - +0.6
696,466 - -0.7
696,466 - -2.4
696,466 - +0.2
696,466 - -0.2
696,466 - -0.5
696,746 - MPMX19_03340 0.44 +0.2
696,835 + MPMX19_03340 0.58 -1.4
696,836 - MPMX19_03340 0.59 +1.4
696,836 - MPMX19_03340 0.59 -0.5
696,836 - MPMX19_03340 0.59 +0.4
696,851 - MPMX19_03340 0.61 -0.9
696,851 - MPMX19_03340 0.61 +0.9
696,851 - MPMX19_03340 0.61 -1.8
697,334 + -0.8
697,335 - +0.7
697,335 - -0.7
697,335 - -1.5
697,335 - -1.2
697,360 + +0.5
697,360 + -1.0
697,361 - -1.3
697,361 - -0.5
697,361 - -0.3
697,361 - -1.8

Or see this region's nucleotide sequence