Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03338

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03337 and MPMX19_03338 are separated by 115 nucleotidesMPMX19_03338 and MPMX19_03339 are separated by 651 nucleotides MPMX19_03337: MPMX19_03337 - Periplasmic oligopeptide-binding protein, at 691,211 to 692,830 _03337 MPMX19_03338: MPMX19_03338 - hypothetical protein, at 692,946 to 693,896 _03338 MPMX19_03339: MPMX19_03339 - hypothetical protein, at 694,548 to 696,389 _03339 Position (kb) 692 693 694Strain fitness (log2 ratio) -2 -1 0 1at 691.962 kb on + strand, within MPMX19_03337at 691.963 kb on - strand, within MPMX19_03337at 691.963 kb on - strand, within MPMX19_03337at 691.965 kb on + strand, within MPMX19_03337at 691.965 kb on + strand, within MPMX19_03337at 691.965 kb on + strand, within MPMX19_03337at 691.965 kb on + strand, within MPMX19_03337at 691.965 kb on + strand, within MPMX19_03337at 691.965 kb on + strand, within MPMX19_03337at 691.965 kb on + strand, within MPMX19_03337at 691.966 kb on - strand, within MPMX19_03337at 691.966 kb on - strand, within MPMX19_03337at 691.966 kb on - strand, within MPMX19_03337at 691.966 kb on - strand, within MPMX19_03337at 691.966 kb on - strand, within MPMX19_03337at 691.966 kb on - strand, within MPMX19_03337at 691.966 kb on - strand, within MPMX19_03337at 691.966 kb on - strand, within MPMX19_03337at 691.968 kb on + strand, within MPMX19_03337at 691.968 kb on + strand, within MPMX19_03337at 691.968 kb on + strand, within MPMX19_03337at 691.968 kb on + strand, within MPMX19_03337at 691.968 kb on + strand, within MPMX19_03337at 691.968 kb on + strand, within MPMX19_03337at 691.968 kb on + strand, within MPMX19_03337at 691.969 kb on - strand, within MPMX19_03337at 691.969 kb on - strand, within MPMX19_03337at 691.969 kb on - strand, within MPMX19_03337at 691.969 kb on - strand, within MPMX19_03337at 691.969 kb on - strand, within MPMX19_03337at 691.969 kb on - strand, within MPMX19_03337at 691.969 kb on - strand, within MPMX19_03337at 692.049 kb on + strand, within MPMX19_03337at 692.049 kb on + strand, within MPMX19_03337at 692.049 kb on + strand, within MPMX19_03337at 692.049 kb on + strand, within MPMX19_03337at 692.050 kb on - strand, within MPMX19_03337at 692.050 kb on - strand, within MPMX19_03337at 692.050 kb on - strand, within MPMX19_03337at 692.050 kb on - strand, within MPMX19_03337at 692.050 kb on - strand, within MPMX19_03337at 692.211 kb on + strand, within MPMX19_03337at 692.211 kb on + strand, within MPMX19_03337at 692.211 kb on + strand, within MPMX19_03337at 692.211 kb on + strand, within MPMX19_03337at 692.211 kb on + strand, within MPMX19_03337at 692.211 kb on + strand, within MPMX19_03337at 692.211 kb on + strand, within MPMX19_03337at 692.211 kb on + strand, within MPMX19_03337at 692.211 kb on + strand, within MPMX19_03337at 692.211 kb on + strand, within MPMX19_03337at 692.211 kb on + strand, within MPMX19_03337at 692.212 kb on - strand, within MPMX19_03337at 692.212 kb on - strand, within MPMX19_03337at 692.212 kb on - strand, within MPMX19_03337at 692.212 kb on - strand, within MPMX19_03337at 692.212 kb on - strand, within MPMX19_03337at 692.212 kb on - strand, within MPMX19_03337at 692.212 kb on - strand, within MPMX19_03337at 692.325 kb on + strand, within MPMX19_03337at 692.326 kb on - strand, within MPMX19_03337at 692.496 kb on + strand, within MPMX19_03337at 692.497 kb on - strand, within MPMX19_03337at 692.565 kb on + strand, within MPMX19_03337at 692.565 kb on + strand, within MPMX19_03337at 692.565 kb on + strand, within MPMX19_03337at 692.565 kb on + strand, within MPMX19_03337at 692.566 kb on - strand, within MPMX19_03337at 692.566 kb on - strand, within MPMX19_03337at 692.566 kb on - strand, within MPMX19_03337at 692.634 kb on + strand, within MPMX19_03337at 692.634 kb on + strand, within MPMX19_03337at 692.634 kb on + strand, within MPMX19_03337at 692.634 kb on + strand, within MPMX19_03337at 692.634 kb on + strand, within MPMX19_03337at 692.635 kb on - strand, within MPMX19_03337at 692.635 kb on - strand, within MPMX19_03337at 692.635 kb on - strand, within MPMX19_03337at 692.635 kb on - strand, within MPMX19_03337at 692.635 kb on - strand, within MPMX19_03337at 692.635 kb on - strand, within MPMX19_03337at 692.635 kb on - strand, within MPMX19_03337at 692.635 kb on - strand, within MPMX19_03337at 692.807 kb on + strandat 692.819 kb on + strandat 692.819 kb on + strandat 692.819 kb on + strandat 692.819 kb on + strandat 692.819 kb on + strandat 692.819 kb on + strandat 692.819 kb on + strandat 692.819 kb on + strandat 692.819 kb on + strandat 692.820 kb on - strandat 692.820 kb on - strandat 692.820 kb on - strandat 692.820 kb on - strandat 692.820 kb on - strandat 693.216 kb on - strand, within MPMX19_03338at 693.367 kb on + strand, within MPMX19_03338at 693.367 kb on + strand, within MPMX19_03338at 693.368 kb on - strand, within MPMX19_03338at 693.368 kb on - strand, within MPMX19_03338at 693.404 kb on - strand, within MPMX19_03338at 693.715 kb on + strand, within MPMX19_03338at 693.716 kb on - strand, within MPMX19_03338at 693.716 kb on - strand, within MPMX19_03338at 693.716 kb on - strand, within MPMX19_03338at 693.896 kb on + strandat 693.896 kb on + strandat 693.896 kb on + strandat 693.896 kb on + strandat 693.896 kb on + strandat 693.897 kb on - strandat 693.897 kb on - strandat 693.897 kb on - strandat 693.897 kb on - strandat 693.931 kb on + strandat 693.931 kb on + strandat 693.932 kb on - strandat 693.932 kb on - strandat 693.932 kb on - strandat 694.071 kb on - strandat 694.176 kb on + strandat 694.239 kb on - strandat 694.308 kb on + strandat 694.397 kb on + strandat 694.480 kb on + strandat 694.545 kb on + strandat 694.545 kb on + strandat 694.545 kb on + strandat 694.546 kb on - strandat 694.546 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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691,962 + MPMX19_03337 0.46 +0.1
691,963 - MPMX19_03337 0.46 +0.2
691,963 - MPMX19_03337 0.46 -2.0
691,965 + MPMX19_03337 0.47 -1.8
691,965 + MPMX19_03337 0.47 +0.2
691,965 + MPMX19_03337 0.47 +0.2
691,965 + MPMX19_03337 0.47 -0.6
691,965 + MPMX19_03337 0.47 +0.7
691,965 + MPMX19_03337 0.47 -1.6
691,965 + MPMX19_03337 0.47 -0.5
691,966 - MPMX19_03337 0.47 -1.4
691,966 - MPMX19_03337 0.47 -0.4
691,966 - MPMX19_03337 0.47 +1.6
691,966 - MPMX19_03337 0.47 -0.6
691,966 - MPMX19_03337 0.47 -0.6
691,966 - MPMX19_03337 0.47 -1.3
691,966 - MPMX19_03337 0.47 -1.6
691,966 - MPMX19_03337 0.47 -0.8
691,968 + MPMX19_03337 0.47 -0.0
691,968 + MPMX19_03337 0.47 -1.4
691,968 + MPMX19_03337 0.47 -0.0
691,968 + MPMX19_03337 0.47 -0.3
691,968 + MPMX19_03337 0.47 +0.2
691,968 + MPMX19_03337 0.47 -2.5
691,968 + MPMX19_03337 0.47 -0.3
691,969 - MPMX19_03337 0.47 +0.1
691,969 - MPMX19_03337 0.47 -1.6
691,969 - MPMX19_03337 0.47 -1.0
691,969 - MPMX19_03337 0.47 -0.7
691,969 - MPMX19_03337 0.47 -1.8
691,969 - MPMX19_03337 0.47 -1.1
691,969 - MPMX19_03337 0.47 -0.0
692,049 + MPMX19_03337 0.52 -1.5
692,049 + MPMX19_03337 0.52 -1.4
692,049 + MPMX19_03337 0.52 -1.0
692,049 + MPMX19_03337 0.52 -0.6
692,050 - MPMX19_03337 0.52 -0.9
692,050 - MPMX19_03337 0.52 -0.3
692,050 - MPMX19_03337 0.52 -0.6
692,050 - MPMX19_03337 0.52 +0.1
692,050 - MPMX19_03337 0.52 +0.1
692,211 + MPMX19_03337 0.62 +0.1
692,211 + MPMX19_03337 0.62 +0.4
692,211 + MPMX19_03337 0.62 +0.3
692,211 + MPMX19_03337 0.62 -1.5
692,211 + MPMX19_03337 0.62 +0.2
692,211 + MPMX19_03337 0.62 -0.1
692,211 + MPMX19_03337 0.62 -1.4
692,211 + MPMX19_03337 0.62 -0.4
692,211 + MPMX19_03337 0.62 -0.1
692,211 + MPMX19_03337 0.62 +0.4
692,211 + MPMX19_03337 0.62 -0.5
692,212 - MPMX19_03337 0.62 -0.4
692,212 - MPMX19_03337 0.62 -0.4
692,212 - MPMX19_03337 0.62 -2.4
692,212 - MPMX19_03337 0.62 +0.1
692,212 - MPMX19_03337 0.62 -1.3
692,212 - MPMX19_03337 0.62 -0.3
692,212 - MPMX19_03337 0.62 -1.1
692,325 + MPMX19_03337 0.69 -1.0
692,326 - MPMX19_03337 0.69 -0.9
692,496 + MPMX19_03337 0.79 -0.2
692,497 - MPMX19_03337 0.79 +0.4
692,565 + MPMX19_03337 0.84 -1.1
692,565 + MPMX19_03337 0.84 -1.0
692,565 + MPMX19_03337 0.84 +0.1
692,565 + MPMX19_03337 0.84 +0.4
692,566 - MPMX19_03337 0.84 +0.8
692,566 - MPMX19_03337 0.84 +0.1
692,566 - MPMX19_03337 0.84 +0.2
692,634 + MPMX19_03337 0.88 +0.1
692,634 + MPMX19_03337 0.88 +0.3
692,634 + MPMX19_03337 0.88 +0.7
692,634 + MPMX19_03337 0.88 +0.5
692,634 + MPMX19_03337 0.88 -0.4
692,635 - MPMX19_03337 0.88 -1.1
692,635 - MPMX19_03337 0.88 -0.8
692,635 - MPMX19_03337 0.88 -1.4
692,635 - MPMX19_03337 0.88 -0.8
692,635 - MPMX19_03337 0.88 +0.8
692,635 - MPMX19_03337 0.88 -0.8
692,635 - MPMX19_03337 0.88 -0.0
692,635 - MPMX19_03337 0.88 +1.6
692,807 + +1.0
692,819 + -0.5
692,819 + -0.8
692,819 + +0.2
692,819 + -1.6
692,819 + -0.9
692,819 + -0.5
692,819 + -0.6
692,819 + +0.2
692,819 + -0.0
692,820 - +0.2
692,820 - -0.8
692,820 - +0.3
692,820 - -0.5
692,820 - -0.6
693,216 - MPMX19_03338 0.28 -0.9
693,367 + MPMX19_03338 0.44 -0.1
693,367 + MPMX19_03338 0.44 -1.1
693,368 - MPMX19_03338 0.44 -1.1
693,368 - MPMX19_03338 0.44 -0.5
693,404 - MPMX19_03338 0.48 -0.6
693,715 + MPMX19_03338 0.81 -0.9
693,716 - MPMX19_03338 0.81 +0.2
693,716 - MPMX19_03338 0.81 -0.2
693,716 - MPMX19_03338 0.81 +0.1
693,896 + -0.2
693,896 + -0.8
693,896 + +0.4
693,896 + -1.0
693,896 + -0.8
693,897 - -0.3
693,897 - -0.1
693,897 - -2.0
693,897 - -0.3
693,931 + +0.8
693,931 + -0.6
693,932 - -0.8
693,932 - -1.6
693,932 - +0.7
694,071 - -0.0
694,176 + -1.2
694,239 - -1.6
694,308 + +1.0
694,397 + +0.7
694,480 + +0.4
694,545 + -0.8
694,545 + -0.7
694,545 + -1.8
694,546 - -1.0
694,546 - -0.3

Or see this region's nucleotide sequence