Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03330 and MPMX19_03331 are separated by 17 nucleotides MPMX19_03331 and MPMX19_03332 overlap by 4 nucleotides
MPMX19_03330: MPMX19_03330 - hypothetical protein, at 680,513 to 683,845
_03330
MPMX19_03331: MPMX19_03331 - hypothetical protein, at 683,863 to 684,597
_03331
MPMX19_03332: MPMX19_03332 - hypothetical protein, at 684,594 to 687,026
_03332
Position (kb) 683
684
685 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 683.450 kb on + strand, within MPMX19_03330 at 683.451 kb on - strand, within MPMX19_03330 at 683.451 kb on - strand, within MPMX19_03330 at 683.642 kb on + strand at 683.643 kb on - strand at 683.864 kb on + strand at 683.864 kb on + strand at 683.865 kb on - strand at 683.946 kb on + strand, within MPMX19_03331 at 684.069 kb on + strand, within MPMX19_03331 at 684.069 kb on + strand, within MPMX19_03331 at 684.180 kb on - strand, within MPMX19_03331 at 684.180 kb on - strand, within MPMX19_03331 at 684.180 kb on - strand, within MPMX19_03331 at 684.458 kb on + strand, within MPMX19_03331 at 684.458 kb on + strand, within MPMX19_03331 at 684.458 kb on + strand, within MPMX19_03331 at 684.459 kb on - strand, within MPMX19_03331 at 684.459 kb on - strand, within MPMX19_03331 at 684.459 kb on - strand, within MPMX19_03331 at 684.459 kb on - strand, within MPMX19_03331 at 684.459 kb on - strand, within MPMX19_03331 at 684.459 kb on - strand, within MPMX19_03331 at 684.459 kb on - strand, within MPMX19_03331 at 684.775 kb on + strand at 684.775 kb on + strand at 684.775 kb on + strand at 684.775 kb on + strand at 684.775 kb on + strand at 684.775 kb on + strand at 684.775 kb on + strand at 684.775 kb on + strand at 684.775 kb on + strand at 684.776 kb on - strand at 684.776 kb on - strand at 684.776 kb on - strand at 684.776 kb on - strand at 684.776 kb on - strand at 684.776 kb on - strand at 684.776 kb on - strand at 684.776 kb on - strand at 684.830 kb on - strand at 684.830 kb on - strand at 685.021 kb on + strand, within MPMX19_03332 at 685.021 kb on + strand, within MPMX19_03332 at 685.022 kb on - strand, within MPMX19_03332 at 685.039 kb on + strand, within MPMX19_03332 at 685.039 kb on + strand, within MPMX19_03332 at 685.039 kb on + strand, within MPMX19_03332 at 685.039 kb on + strand, within MPMX19_03332 at 685.039 kb on + strand, within MPMX19_03332 at 685.039 kb on + strand, within MPMX19_03332 at 685.039 kb on + strand, within MPMX19_03332 at 685.040 kb on - strand, within MPMX19_03332 at 685.040 kb on - strand, within MPMX19_03332 at 685.040 kb on - strand, within MPMX19_03332 at 685.040 kb on - strand, within MPMX19_03332 at 685.105 kb on + strand, within MPMX19_03332 at 685.106 kb on - strand, within MPMX19_03332 at 685.108 kb on + strand, within MPMX19_03332 at 685.108 kb on + strand, within MPMX19_03332 at 685.109 kb on - strand, within MPMX19_03332 at 685.109 kb on - strand, within MPMX19_03332 at 685.109 kb on - strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.420 kb on + strand, within MPMX19_03332 at 685.420 kb on + strand, within MPMX19_03332 at 685.421 kb on - strand, within MPMX19_03332 at 685.468 kb on + strand, within MPMX19_03332
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 683,450 + MPMX19_03330 0.88 +0.1 683,451 - MPMX19_03330 0.88 +1.9 683,451 - MPMX19_03330 0.88 +0.2 683,642 + -1.0 683,643 - -0.9 683,864 + -0.4 683,864 + -0.3 683,865 - +0.0 683,946 + MPMX19_03331 0.11 -0.0 684,069 + MPMX19_03331 0.28 -0.5 684,069 + MPMX19_03331 0.28 +0.1 684,180 - MPMX19_03331 0.43 +0.8 684,180 - MPMX19_03331 0.43 -1.2 684,180 - MPMX19_03331 0.43 +0.1 684,458 + MPMX19_03331 0.81 +0.4 684,458 + MPMX19_03331 0.81 -1.4 684,458 + MPMX19_03331 0.81 -1.2 684,459 - MPMX19_03331 0.81 -1.0 684,459 - MPMX19_03331 0.81 +0.5 684,459 - MPMX19_03331 0.81 +0.6 684,459 - MPMX19_03331 0.81 -0.2 684,459 - MPMX19_03331 0.81 +0.6 684,459 - MPMX19_03331 0.81 -2.4 684,459 - MPMX19_03331 0.81 -0.4 684,775 + -1.7 684,775 + +1.4 684,775 + +0.2 684,775 + -1.8 684,775 + -0.2 684,775 + -1.0 684,775 + +3.4 684,775 + -0.3 684,775 + -0.9 684,776 - +0.1 684,776 - -0.2 684,776 - -1.8 684,776 - -0.4 684,776 - -1.7 684,776 - +0.2 684,776 - +0.2 684,776 - -1.4 684,830 - -0.9 684,830 - -0.8 685,021 + MPMX19_03332 0.18 -1.4 685,021 + MPMX19_03332 0.18 +0.1 685,022 - MPMX19_03332 0.18 +0.1 685,039 + MPMX19_03332 0.18 +0.6 685,039 + MPMX19_03332 0.18 -0.6 685,039 + MPMX19_03332 0.18 +0.4 685,039 + MPMX19_03332 0.18 -1.3 685,039 + MPMX19_03332 0.18 -0.8 685,039 + MPMX19_03332 0.18 +1.0 685,039 + MPMX19_03332 0.18 -1.2 685,040 - MPMX19_03332 0.18 -0.4 685,040 - MPMX19_03332 0.18 -1.7 685,040 - MPMX19_03332 0.18 -0.0 685,040 - MPMX19_03332 0.18 -0.3 685,105 + MPMX19_03332 0.21 +0.1 685,106 - MPMX19_03332 0.21 -1.0 685,108 + MPMX19_03332 0.21 -0.8 685,108 + MPMX19_03332 0.21 -0.6 685,109 - MPMX19_03332 0.21 +0.2 685,109 - MPMX19_03332 0.21 -0.2 685,109 - MPMX19_03332 0.21 +0.3 685,396 + MPMX19_03332 0.33 +0.6 685,396 + MPMX19_03332 0.33 +0.7 685,396 + MPMX19_03332 0.33 -1.2 685,396 + MPMX19_03332 0.33 -0.0 685,396 + MPMX19_03332 0.33 -1.4 685,396 + MPMX19_03332 0.33 -0.1 685,396 + MPMX19_03332 0.33 -0.3 685,396 + MPMX19_03332 0.33 +1.2 685,396 + MPMX19_03332 0.33 -0.2 685,396 + MPMX19_03332 0.33 -0.0 685,396 + MPMX19_03332 0.33 -1.1 685,396 + MPMX19_03332 0.33 +1.3 685,396 + MPMX19_03332 0.33 -0.3 685,396 + MPMX19_03332 0.33 -0.3 685,396 + MPMX19_03332 0.33 +0.0 685,396 + MPMX19_03332 0.33 -1.1 685,396 + MPMX19_03332 0.33 +0.2 685,396 + MPMX19_03332 0.33 -1.0 685,396 + MPMX19_03332 0.33 -0.8 685,396 + MPMX19_03332 0.33 -0.4 685,396 + MPMX19_03332 0.33 +1.0 685,396 + MPMX19_03332 0.33 -0.0 685,396 + MPMX19_03332 0.33 +0.2 685,396 + MPMX19_03332 0.33 -0.7 685,396 + MPMX19_03332 0.33 -0.6 685,396 + MPMX19_03332 0.33 +0.8 685,397 - MPMX19_03332 0.33 +0.1 685,397 - MPMX19_03332 0.33 +0.1 685,397 - MPMX19_03332 0.33 +1.3 685,397 - MPMX19_03332 0.33 -0.6 685,397 - MPMX19_03332 0.33 -0.1 685,397 - MPMX19_03332 0.33 -0.6 685,397 - MPMX19_03332 0.33 -1.9 685,397 - MPMX19_03332 0.33 -2.4 685,397 - MPMX19_03332 0.33 -0.4 685,397 - MPMX19_03332 0.33 -1.1 685,397 - MPMX19_03332 0.33 +0.6 685,397 - MPMX19_03332 0.33 +0.2 685,397 - MPMX19_03332 0.33 -1.4 685,397 - MPMX19_03332 0.33 +1.7 685,397 - MPMX19_03332 0.33 -0.5 685,397 - MPMX19_03332 0.33 -1.0 685,397 - MPMX19_03332 0.33 -0.4 685,397 - MPMX19_03332 0.33 +0.3 685,397 - MPMX19_03332 0.33 -0.3 685,397 - MPMX19_03332 0.33 -1.3 685,397 - MPMX19_03332 0.33 -1.0 685,420 + MPMX19_03332 0.34 -0.1 685,420 + MPMX19_03332 0.34 +0.4 685,421 - MPMX19_03332 0.34 -2.1 685,468 + MPMX19_03332 0.36 +0.8
Or see this region's nucleotide sequence