Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03325

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03324 and MPMX19_03325 overlap by 4 nucleotidesMPMX19_03325 and MPMX19_03326 are separated by 155 nucleotidesMPMX19_03326 and MPMX19_03327 are separated by 16 nucleotidesMPMX19_03327 and MPMX19_03328 overlap by 50 nucleotides MPMX19_03324: MPMX19_03324 - Vitamin B12 import ATP-binding protein BtuD, at 675,041 to 676,591 _03324 MPMX19_03325: MPMX19_03325 - hypothetical protein, at 676,588 to 677,742 _03325 MPMX19_03326: MPMX19_03326 - hypothetical protein, at 677,898 to 678,302 _03326 MPMX19_03327: MPMX19_03327 - hypothetical protein, at 678,319 to 678,723 _03327 MPMX19_03328: MPMX19_03328 - hypothetical protein, at 678,674 to 679,411 _03328 Position (kb) 676 677 678Strain fitness (log2 ratio) -2 -1 0 1 2at 675.604 kb on - strand, within MPMX19_03324at 675.621 kb on + strand, within MPMX19_03324at 675.621 kb on + strand, within MPMX19_03324at 675.621 kb on + strand, within MPMX19_03324at 675.621 kb on + strand, within MPMX19_03324at 675.622 kb on - strand, within MPMX19_03324at 675.622 kb on - strand, within MPMX19_03324at 675.622 kb on - strand, within MPMX19_03324at 675.622 kb on - strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.717 kb on + strand, within MPMX19_03324at 675.717 kb on + strand, within MPMX19_03324at 675.730 kb on - strand, within MPMX19_03324at 675.730 kb on - strand, within MPMX19_03324at 675.835 kb on + strand, within MPMX19_03324at 675.835 kb on + strand, within MPMX19_03324at 675.835 kb on + strand, within MPMX19_03324at 675.835 kb on + strand, within MPMX19_03324at 675.918 kb on - strand, within MPMX19_03324at 675.918 kb on - strand, within MPMX19_03324at 675.918 kb on - strand, within MPMX19_03324at 675.918 kb on - strand, within MPMX19_03324at 675.918 kb on - strand, within MPMX19_03324at 676.625 kb on + strandat 676.626 kb on - strandat 676.820 kb on + strand, within MPMX19_03325at 676.820 kb on + strand, within MPMX19_03325at 677.189 kb on + strand, within MPMX19_03325at 677.189 kb on + strand, within MPMX19_03325at 677.189 kb on + strand, within MPMX19_03325at 677.189 kb on + strand, within MPMX19_03325at 677.190 kb on - strand, within MPMX19_03325at 677.190 kb on - strand, within MPMX19_03325at 677.265 kb on - strand, within MPMX19_03325at 677.615 kb on + strand, within MPMX19_03325at 677.615 kb on + strand, within MPMX19_03325at 677.615 kb on + strand, within MPMX19_03325at 677.615 kb on + strand, within MPMX19_03325at 677.615 kb on + strand, within MPMX19_03325at 677.615 kb on + strand, within MPMX19_03325at 677.615 kb on + strand, within MPMX19_03325at 677.616 kb on - strand, within MPMX19_03325at 677.616 kb on - strand, within MPMX19_03325at 677.616 kb on - strand, within MPMX19_03325at 677.616 kb on - strand, within MPMX19_03325at 677.850 kb on + strandat 677.851 kb on - strandat 677.961 kb on + strand, within MPMX19_03326at 677.961 kb on + strand, within MPMX19_03326at 677.961 kb on + strand, within MPMX19_03326at 677.961 kb on + strand, within MPMX19_03326at 677.961 kb on + strand, within MPMX19_03326at 677.961 kb on + strand, within MPMX19_03326at 677.961 kb on + strand, within MPMX19_03326at 677.961 kb on + strand, within MPMX19_03326at 677.961 kb on + strand, within MPMX19_03326at 677.961 kb on + strand, within MPMX19_03326at 677.961 kb on + strand, within MPMX19_03326at 677.962 kb on - strand, within MPMX19_03326at 677.962 kb on - strand, within MPMX19_03326at 677.962 kb on - strand, within MPMX19_03326at 677.962 kb on - strand, within MPMX19_03326at 677.962 kb on - strand, within MPMX19_03326at 677.962 kb on - strand, within MPMX19_03326at 677.982 kb on + strand, within MPMX19_03326at 677.982 kb on + strand, within MPMX19_03326at 677.983 kb on - strand, within MPMX19_03326at 677.983 kb on - strand, within MPMX19_03326at 677.983 kb on - strand, within MPMX19_03326at 677.985 kb on + strand, within MPMX19_03326at 677.985 kb on + strand, within MPMX19_03326at 677.985 kb on + strand, within MPMX19_03326at 677.986 kb on - strand, within MPMX19_03326at 677.986 kb on - strand, within MPMX19_03326at 677.986 kb on - strand, within MPMX19_03326at 677.986 kb on - strand, within MPMX19_03326at 677.986 kb on - strand, within MPMX19_03326at 677.986 kb on - strand, within MPMX19_03326at 678.259 kb on - strand, within MPMX19_03326at 678.334 kb on + strandat 678.351 kb on - strandat 678.351 kb on - strandat 678.395 kb on - strand, within MPMX19_03327at 678.400 kb on + strand, within MPMX19_03327at 678.401 kb on - strand, within MPMX19_03327at 678.401 kb on - strand, within MPMX19_03327at 678.401 kb on - strand, within MPMX19_03327at 678.401 kb on - strand, within MPMX19_03327at 678.478 kb on + strand, within MPMX19_03327at 678.478 kb on + strand, within MPMX19_03327at 678.479 kb on - strand, within MPMX19_03327at 678.488 kb on - strand, within MPMX19_03327at 678.550 kb on + strand, within MPMX19_03327at 678.551 kb on - strand, within MPMX19_03327at 678.559 kb on + strand, within MPMX19_03327at 678.560 kb on - strand, within MPMX19_03327at 678.560 kb on - strand, within MPMX19_03327at 678.560 kb on - strand, within MPMX19_03327at 678.560 kb on - strand, within MPMX19_03327at 678.560 kb on - strand, within MPMX19_03327at 678.616 kb on + strand, within MPMX19_03327at 678.616 kb on + strand, within MPMX19_03327at 678.616 kb on + strand, within MPMX19_03327at 678.616 kb on + strand, within MPMX19_03327at 678.616 kb on + strand, within MPMX19_03327at 678.616 kb on + strand, within MPMX19_03327at 678.616 kb on + strand, within MPMX19_03327at 678.616 kb on + strand, within MPMX19_03327at 678.617 kb on - strand, within MPMX19_03327at 678.617 kb on - strand, within MPMX19_03327at 678.617 kb on - strand, within MPMX19_03327at 678.617 kb on - strand, within MPMX19_03327at 678.617 kb on - strand, within MPMX19_03327

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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675,604 - MPMX19_03324 0.36 -1.4
675,621 + MPMX19_03324 0.37 +0.5
675,621 + MPMX19_03324 0.37 -0.8
675,621 + MPMX19_03324 0.37 -1.3
675,621 + MPMX19_03324 0.37 -0.5
675,622 - MPMX19_03324 0.37 -0.8
675,622 - MPMX19_03324 0.37 +0.2
675,622 - MPMX19_03324 0.37 -0.8
675,622 - MPMX19_03324 0.37 -0.9
675,678 + MPMX19_03324 0.41 +0.0
675,678 + MPMX19_03324 0.41 +1.0
675,678 + MPMX19_03324 0.41 -0.4
675,678 + MPMX19_03324 0.41 -0.0
675,678 + MPMX19_03324 0.41 +0.2
675,678 + MPMX19_03324 0.41 -1.0
675,678 + MPMX19_03324 0.41 -0.2
675,678 + MPMX19_03324 0.41 -0.2
675,678 + MPMX19_03324 0.41 +1.0
675,678 + MPMX19_03324 0.41 -2.0
675,678 + MPMX19_03324 0.41 -0.9
675,678 + MPMX19_03324 0.41 -1.5
675,678 + MPMX19_03324 0.41 +0.3
675,678 + MPMX19_03324 0.41 -0.6
675,678 + MPMX19_03324 0.41 +0.4
675,678 + MPMX19_03324 0.41 +0.1
675,678 + MPMX19_03324 0.41 -0.8
675,678 + MPMX19_03324 0.41 -0.6
675,679 - MPMX19_03324 0.41 -1.9
675,679 - MPMX19_03324 0.41 -0.3
675,679 - MPMX19_03324 0.41 -0.1
675,679 - MPMX19_03324 0.41 -0.7
675,679 - MPMX19_03324 0.41 -0.0
675,679 - MPMX19_03324 0.41 -0.9
675,679 - MPMX19_03324 0.41 -0.4
675,679 - MPMX19_03324 0.41 -0.8
675,679 - MPMX19_03324 0.41 -1.6
675,679 - MPMX19_03324 0.41 +0.1
675,679 - MPMX19_03324 0.41 -0.8
675,679 - MPMX19_03324 0.41 -0.1
675,679 - MPMX19_03324 0.41 +0.9
675,679 - MPMX19_03324 0.41 -0.1
675,679 - MPMX19_03324 0.41 +2.6
675,679 - MPMX19_03324 0.41 -1.0
675,679 - MPMX19_03324 0.41 -0.6
675,679 - MPMX19_03324 0.41 -0.8
675,679 - MPMX19_03324 0.41 -1.4
675,679 - MPMX19_03324 0.41 -0.2
675,679 - MPMX19_03324 0.41 -0.9
675,679 - MPMX19_03324 0.41 -0.2
675,679 - MPMX19_03324 0.41 +0.3
675,717 + MPMX19_03324 0.44 -1.9
675,717 + MPMX19_03324 0.44 +0.2
675,730 - MPMX19_03324 0.44 +0.3
675,730 - MPMX19_03324 0.44 +1.2
675,835 + MPMX19_03324 0.51 -1.0
675,835 + MPMX19_03324 0.51 +0.1
675,835 + MPMX19_03324 0.51 -1.9
675,835 + MPMX19_03324 0.51 -0.8
675,918 - MPMX19_03324 0.57 +0.6
675,918 - MPMX19_03324 0.57 -0.7
675,918 - MPMX19_03324 0.57 -0.1
675,918 - MPMX19_03324 0.57 +0.4
675,918 - MPMX19_03324 0.57 -1.4
676,625 + -1.0
676,626 - +0.6
676,820 + MPMX19_03325 0.20 -0.4
676,820 + MPMX19_03325 0.20 -0.8
677,189 + MPMX19_03325 0.52 -0.0
677,189 + MPMX19_03325 0.52 -0.0
677,189 + MPMX19_03325 0.52 -0.8
677,189 + MPMX19_03325 0.52 -1.1
677,190 - MPMX19_03325 0.52 -0.8
677,190 - MPMX19_03325 0.52 -0.4
677,265 - MPMX19_03325 0.59 -2.0
677,615 + MPMX19_03325 0.89 +0.4
677,615 + MPMX19_03325 0.89 -0.6
677,615 + MPMX19_03325 0.89 -1.5
677,615 + MPMX19_03325 0.89 -2.0
677,615 + MPMX19_03325 0.89 -0.3
677,615 + MPMX19_03325 0.89 -1.1
677,615 + MPMX19_03325 0.89 -0.3
677,616 - MPMX19_03325 0.89 +0.1
677,616 - MPMX19_03325 0.89 -1.6
677,616 - MPMX19_03325 0.89 -1.7
677,616 - MPMX19_03325 0.89 -0.4
677,850 + -0.4
677,851 - +0.0
677,961 + MPMX19_03326 0.16 -0.5
677,961 + MPMX19_03326 0.16 -0.0
677,961 + MPMX19_03326 0.16 -0.6
677,961 + MPMX19_03326 0.16 +1.1
677,961 + MPMX19_03326 0.16 -1.8
677,961 + MPMX19_03326 0.16 -0.4
677,961 + MPMX19_03326 0.16 +0.3
677,961 + MPMX19_03326 0.16 +0.2
677,961 + MPMX19_03326 0.16 -1.7
677,961 + MPMX19_03326 0.16 +0.2
677,961 + MPMX19_03326 0.16 +0.8
677,962 - MPMX19_03326 0.16 +1.1
677,962 - MPMX19_03326 0.16 -1.2
677,962 - MPMX19_03326 0.16 -1.2
677,962 - MPMX19_03326 0.16 -0.9
677,962 - MPMX19_03326 0.16 -0.8
677,962 - MPMX19_03326 0.16 +0.5
677,982 + MPMX19_03326 0.21 -0.5
677,982 + MPMX19_03326 0.21 -0.5
677,983 - MPMX19_03326 0.21 +1.1
677,983 - MPMX19_03326 0.21 +1.4
677,983 - MPMX19_03326 0.21 -0.8
677,985 + MPMX19_03326 0.21 -1.0
677,985 + MPMX19_03326 0.21 -0.2
677,985 + MPMX19_03326 0.21 -1.6
677,986 - MPMX19_03326 0.22 -0.6
677,986 - MPMX19_03326 0.22 -0.6
677,986 - MPMX19_03326 0.22 +0.6
677,986 - MPMX19_03326 0.22 -1.6
677,986 - MPMX19_03326 0.22 -0.4
677,986 - MPMX19_03326 0.22 -1.9
678,259 - MPMX19_03326 0.89 -0.5
678,334 + -0.4
678,351 - -1.3
678,351 - -0.5
678,395 - MPMX19_03327 0.19 -0.8
678,400 + MPMX19_03327 0.20 -1.8
678,401 - MPMX19_03327 0.20 -0.8
678,401 - MPMX19_03327 0.20 +1.0
678,401 - MPMX19_03327 0.20 -0.8
678,401 - MPMX19_03327 0.20 +0.7
678,478 + MPMX19_03327 0.39 -1.1
678,478 + MPMX19_03327 0.39 -1.2
678,479 - MPMX19_03327 0.40 -0.8
678,488 - MPMX19_03327 0.42 -0.7
678,550 + MPMX19_03327 0.57 -0.4
678,551 - MPMX19_03327 0.57 -1.0
678,559 + MPMX19_03327 0.59 -0.1
678,560 - MPMX19_03327 0.60 -1.4
678,560 - MPMX19_03327 0.60 +1.6
678,560 - MPMX19_03327 0.60 -0.0
678,560 - MPMX19_03327 0.60 +0.7
678,560 - MPMX19_03327 0.60 +0.7
678,616 + MPMX19_03327 0.73 -0.9
678,616 + MPMX19_03327 0.73 +0.1
678,616 + MPMX19_03327 0.73 -1.5
678,616 + MPMX19_03327 0.73 -0.6
678,616 + MPMX19_03327 0.73 -0.8
678,616 + MPMX19_03327 0.73 -1.2
678,616 + MPMX19_03327 0.73 +0.2
678,616 + MPMX19_03327 0.73 +0.4
678,617 - MPMX19_03327 0.74 -1.0
678,617 - MPMX19_03327 0.74 -0.4
678,617 - MPMX19_03327 0.74 +0.2
678,617 - MPMX19_03327 0.74 -0.0
678,617 - MPMX19_03327 0.74 +0.6

Or see this region's nucleotide sequence