Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03323

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03322 and MPMX19_03323 are separated by 102 nucleotidesMPMX19_03323 and MPMX19_03324 are separated by 92 nucleotides MPMX19_03322: MPMX19_03322 - hypothetical protein, at 672,957 to 673,919 _03322 MPMX19_03323: MPMX19_03323 - hypothetical protein, at 674,022 to 674,948 _03323 MPMX19_03324: MPMX19_03324 - Vitamin B12 import ATP-binding protein BtuD, at 675,041 to 676,591 _03324 Position (kb) 674 675Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 673.159 kb on + strand, within MPMX19_03322at 673.159 kb on + strand, within MPMX19_03322at 673.180 kb on + strand, within MPMX19_03322at 673.181 kb on - strand, within MPMX19_03322at 673.181 kb on - strand, within MPMX19_03322at 673.181 kb on - strand, within MPMX19_03322at 673.396 kb on + strand, within MPMX19_03322at 673.396 kb on + strand, within MPMX19_03322at 673.396 kb on + strand, within MPMX19_03322at 673.397 kb on - strand, within MPMX19_03322at 673.397 kb on - strand, within MPMX19_03322at 673.483 kb on + strand, within MPMX19_03322at 673.483 kb on + strand, within MPMX19_03322at 673.483 kb on + strand, within MPMX19_03322at 673.484 kb on - strand, within MPMX19_03322at 673.484 kb on - strand, within MPMX19_03322at 673.484 kb on - strand, within MPMX19_03322at 673.484 kb on - strand, within MPMX19_03322at 673.484 kb on - strand, within MPMX19_03322at 673.484 kb on - strand, within MPMX19_03322at 673.484 kb on - strand, within MPMX19_03322at 673.697 kb on - strand, within MPMX19_03322at 673.732 kb on + strand, within MPMX19_03322at 673.732 kb on + strand, within MPMX19_03322at 673.732 kb on + strand, within MPMX19_03322at 673.732 kb on + strand, within MPMX19_03322at 673.732 kb on + strand, within MPMX19_03322at 673.732 kb on + strand, within MPMX19_03322at 673.733 kb on - strand, within MPMX19_03322at 673.733 kb on - strand, within MPMX19_03322at 673.927 kb on + strandat 673.927 kb on + strandat 673.927 kb on + strandat 673.927 kb on + strandat 673.928 kb on - strandat 673.941 kb on + strandat 673.941 kb on + strandat 673.941 kb on + strandat 673.941 kb on + strandat 673.941 kb on + strandat 673.941 kb on + strandat 673.941 kb on + strandat 673.941 kb on + strandat 673.942 kb on - strandat 673.942 kb on - strandat 673.942 kb on - strandat 673.942 kb on - strandat 673.942 kb on - strandat 673.942 kb on - strandat 673.942 kb on - strandat 674.392 kb on + strand, within MPMX19_03323at 674.392 kb on + strand, within MPMX19_03323at 674.392 kb on + strand, within MPMX19_03323at 674.392 kb on + strand, within MPMX19_03323at 674.392 kb on + strand, within MPMX19_03323at 674.392 kb on + strand, within MPMX19_03323at 674.392 kb on + strand, within MPMX19_03323at 674.393 kb on - strand, within MPMX19_03323at 674.393 kb on - strand, within MPMX19_03323at 674.393 kb on - strand, within MPMX19_03323at 674.393 kb on - strand, within MPMX19_03323at 674.393 kb on - strand, within MPMX19_03323at 674.490 kb on + strand, within MPMX19_03323at 674.491 kb on - strand, within MPMX19_03323at 674.491 kb on - strand, within MPMX19_03323at 674.491 kb on - strand, within MPMX19_03323at 674.732 kb on - strand, within MPMX19_03323at 675.411 kb on + strand, within MPMX19_03324at 675.411 kb on + strand, within MPMX19_03324at 675.411 kb on + strand, within MPMX19_03324at 675.411 kb on + strand, within MPMX19_03324at 675.411 kb on + strand, within MPMX19_03324at 675.411 kb on + strand, within MPMX19_03324at 675.411 kb on + strand, within MPMX19_03324at 675.411 kb on + strand, within MPMX19_03324at 675.412 kb on - strand, within MPMX19_03324at 675.412 kb on - strand, within MPMX19_03324at 675.412 kb on - strand, within MPMX19_03324at 675.412 kb on - strand, within MPMX19_03324at 675.604 kb on - strand, within MPMX19_03324at 675.621 kb on + strand, within MPMX19_03324at 675.621 kb on + strand, within MPMX19_03324at 675.621 kb on + strand, within MPMX19_03324at 675.621 kb on + strand, within MPMX19_03324at 675.622 kb on - strand, within MPMX19_03324at 675.622 kb on - strand, within MPMX19_03324at 675.622 kb on - strand, within MPMX19_03324at 675.622 kb on - strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.717 kb on + strand, within MPMX19_03324at 675.717 kb on + strand, within MPMX19_03324at 675.730 kb on - strand, within MPMX19_03324at 675.730 kb on - strand, within MPMX19_03324at 675.835 kb on + strand, within MPMX19_03324at 675.835 kb on + strand, within MPMX19_03324at 675.835 kb on + strand, within MPMX19_03324at 675.835 kb on + strand, within MPMX19_03324at 675.918 kb on - strand, within MPMX19_03324at 675.918 kb on - strand, within MPMX19_03324at 675.918 kb on - strand, within MPMX19_03324at 675.918 kb on - strand, within MPMX19_03324at 675.918 kb on - strand, within MPMX19_03324

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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673,159 + MPMX19_03322 0.21 -0.6
673,159 + MPMX19_03322 0.21 -0.7
673,180 + MPMX19_03322 0.23 -0.4
673,181 - MPMX19_03322 0.23 +1.2
673,181 - MPMX19_03322 0.23 -1.4
673,181 - MPMX19_03322 0.23 +0.8
673,396 + MPMX19_03322 0.46 -1.2
673,396 + MPMX19_03322 0.46 -0.1
673,396 + MPMX19_03322 0.46 -1.2
673,397 - MPMX19_03322 0.46 +0.7
673,397 - MPMX19_03322 0.46 -0.3
673,483 + MPMX19_03322 0.55 +0.6
673,483 + MPMX19_03322 0.55 +0.7
673,483 + MPMX19_03322 0.55 -3.0
673,484 - MPMX19_03322 0.55 -1.5
673,484 - MPMX19_03322 0.55 -1.6
673,484 - MPMX19_03322 0.55 +0.1
673,484 - MPMX19_03322 0.55 -0.4
673,484 - MPMX19_03322 0.55 -1.4
673,484 - MPMX19_03322 0.55 -1.8
673,484 - MPMX19_03322 0.55 -2.1
673,697 - MPMX19_03322 0.77 -1.6
673,732 + MPMX19_03322 0.80 -1.1
673,732 + MPMX19_03322 0.80 -0.4
673,732 + MPMX19_03322 0.80 -0.4
673,732 + MPMX19_03322 0.80 -1.4
673,732 + MPMX19_03322 0.80 -1.2
673,732 + MPMX19_03322 0.80 -0.4
673,733 - MPMX19_03322 0.81 -1.0
673,733 - MPMX19_03322 0.81 -0.2
673,927 + -1.1
673,927 + -1.6
673,927 + -0.3
673,927 + -0.4
673,928 - -0.1
673,941 + -0.2
673,941 + +0.4
673,941 + +0.0
673,941 + -0.8
673,941 + +1.6
673,941 + -0.3
673,941 + -0.4
673,941 + +0.1
673,942 - +0.3
673,942 - +0.6
673,942 - +0.6
673,942 - +0.3
673,942 - +0.4
673,942 - -1.2
673,942 - -0.0
674,392 + MPMX19_03323 0.40 +1.3
674,392 + MPMX19_03323 0.40 -1.9
674,392 + MPMX19_03323 0.40 +0.0
674,392 + MPMX19_03323 0.40 +0.1
674,392 + MPMX19_03323 0.40 -1.2
674,392 + MPMX19_03323 0.40 -1.3
674,392 + MPMX19_03323 0.40 -0.6
674,393 - MPMX19_03323 0.40 -0.7
674,393 - MPMX19_03323 0.40 -0.0
674,393 - MPMX19_03323 0.40 -1.0
674,393 - MPMX19_03323 0.40 +0.6
674,393 - MPMX19_03323 0.40 -0.9
674,490 + MPMX19_03323 0.50 +0.6
674,491 - MPMX19_03323 0.51 -1.4
674,491 - MPMX19_03323 0.51 -0.6
674,491 - MPMX19_03323 0.51 -1.7
674,732 - MPMX19_03323 0.77 -1.2
675,411 + MPMX19_03324 0.24 -0.6
675,411 + MPMX19_03324 0.24 -1.7
675,411 + MPMX19_03324 0.24 +0.5
675,411 + MPMX19_03324 0.24 +0.2
675,411 + MPMX19_03324 0.24 -1.5
675,411 + MPMX19_03324 0.24 -0.4
675,411 + MPMX19_03324 0.24 -1.1
675,411 + MPMX19_03324 0.24 +0.2
675,412 - MPMX19_03324 0.24 -1.3
675,412 - MPMX19_03324 0.24 -0.0
675,412 - MPMX19_03324 0.24 -0.0
675,412 - MPMX19_03324 0.24 -0.2
675,604 - MPMX19_03324 0.36 -1.4
675,621 + MPMX19_03324 0.37 +0.5
675,621 + MPMX19_03324 0.37 -0.8
675,621 + MPMX19_03324 0.37 -1.3
675,621 + MPMX19_03324 0.37 -0.5
675,622 - MPMX19_03324 0.37 -0.8
675,622 - MPMX19_03324 0.37 +0.2
675,622 - MPMX19_03324 0.37 -0.8
675,622 - MPMX19_03324 0.37 -0.9
675,678 + MPMX19_03324 0.41 +0.0
675,678 + MPMX19_03324 0.41 +1.0
675,678 + MPMX19_03324 0.41 -0.4
675,678 + MPMX19_03324 0.41 -0.0
675,678 + MPMX19_03324 0.41 +0.2
675,678 + MPMX19_03324 0.41 -1.0
675,678 + MPMX19_03324 0.41 -0.2
675,678 + MPMX19_03324 0.41 -0.2
675,678 + MPMX19_03324 0.41 +1.0
675,678 + MPMX19_03324 0.41 -2.0
675,678 + MPMX19_03324 0.41 -0.9
675,678 + MPMX19_03324 0.41 -1.5
675,678 + MPMX19_03324 0.41 +0.3
675,678 + MPMX19_03324 0.41 -0.6
675,678 + MPMX19_03324 0.41 +0.4
675,678 + MPMX19_03324 0.41 +0.1
675,678 + MPMX19_03324 0.41 -0.8
675,678 + MPMX19_03324 0.41 -0.6
675,679 - MPMX19_03324 0.41 -1.9
675,679 - MPMX19_03324 0.41 -0.3
675,679 - MPMX19_03324 0.41 -0.1
675,679 - MPMX19_03324 0.41 -0.7
675,679 - MPMX19_03324 0.41 -0.0
675,679 - MPMX19_03324 0.41 -0.9
675,679 - MPMX19_03324 0.41 -0.4
675,679 - MPMX19_03324 0.41 -0.8
675,679 - MPMX19_03324 0.41 -1.6
675,679 - MPMX19_03324 0.41 +0.1
675,679 - MPMX19_03324 0.41 -0.8
675,679 - MPMX19_03324 0.41 -0.1
675,679 - MPMX19_03324 0.41 +0.9
675,679 - MPMX19_03324 0.41 -0.1
675,679 - MPMX19_03324 0.41 +2.6
675,679 - MPMX19_03324 0.41 -1.0
675,679 - MPMX19_03324 0.41 -0.6
675,679 - MPMX19_03324 0.41 -0.8
675,679 - MPMX19_03324 0.41 -1.4
675,679 - MPMX19_03324 0.41 -0.2
675,679 - MPMX19_03324 0.41 -0.9
675,679 - MPMX19_03324 0.41 -0.2
675,679 - MPMX19_03324 0.41 +0.3
675,717 + MPMX19_03324 0.44 -1.9
675,717 + MPMX19_03324 0.44 +0.2
675,730 - MPMX19_03324 0.44 +0.3
675,730 - MPMX19_03324 0.44 +1.2
675,835 + MPMX19_03324 0.51 -1.0
675,835 + MPMX19_03324 0.51 +0.1
675,835 + MPMX19_03324 0.51 -1.9
675,835 + MPMX19_03324 0.51 -0.8
675,918 - MPMX19_03324 0.57 +0.6
675,918 - MPMX19_03324 0.57 -0.7
675,918 - MPMX19_03324 0.57 -0.1
675,918 - MPMX19_03324 0.57 +0.4
675,918 - MPMX19_03324 0.57 -1.4

Or see this region's nucleotide sequence