Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03317

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03316 and MPMX19_03317 are separated by 305 nucleotidesMPMX19_03317 and MPMX19_03318 are separated by 62 nucleotides MPMX19_03316: MPMX19_03316 - hypothetical protein, at 663,650 to 664,879 _03316 MPMX19_03317: MPMX19_03317 - hypothetical protein, at 665,185 to 666,366 _03317 MPMX19_03318: MPMX19_03318 - hypothetical protein, at 666,429 to 667,916 _03318 Position (kb) 665 666 667Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 664.203 kb on + strand, within MPMX19_03316at 664.204 kb on - strand, within MPMX19_03316at 664.218 kb on + strand, within MPMX19_03316at 664.218 kb on + strand, within MPMX19_03316at 664.218 kb on + strand, within MPMX19_03316at 664.218 kb on + strand, within MPMX19_03316at 664.218 kb on + strand, within MPMX19_03316at 664.219 kb on - strand, within MPMX19_03316at 664.546 kb on - strand, within MPMX19_03316at 664.654 kb on - strand, within MPMX19_03316at 664.654 kb on - strand, within MPMX19_03316at 664.654 kb on - strand, within MPMX19_03316at 664.678 kb on + strand, within MPMX19_03316at 664.680 kb on + strand, within MPMX19_03316at 664.680 kb on + strand, within MPMX19_03316at 664.680 kb on + strand, within MPMX19_03316at 664.680 kb on + strand, within MPMX19_03316at 664.681 kb on - strand, within MPMX19_03316at 664.681 kb on - strand, within MPMX19_03316at 664.722 kb on + strand, within MPMX19_03316at 664.723 kb on - strand, within MPMX19_03316at 664.916 kb on + strandat 664.917 kb on - strandat 664.921 kb on - strandat 664.960 kb on + strandat 664.961 kb on - strandat 664.961 kb on - strandat 664.988 kb on + strandat 664.988 kb on + strandat 665.042 kb on + strandat 665.042 kb on + strandat 665.042 kb on + strandat 665.042 kb on + strandat 665.301 kb on - strandat 665.301 kb on - strandat 665.301 kb on - strandat 665.303 kb on + strandat 665.303 kb on + strandat 665.304 kb on - strand, within MPMX19_03317at 665.304 kb on - strand, within MPMX19_03317at 665.304 kb on - strand, within MPMX19_03317at 665.324 kb on + strand, within MPMX19_03317at 665.324 kb on + strand, within MPMX19_03317at 665.450 kb on + strand, within MPMX19_03317at 665.450 kb on + strand, within MPMX19_03317at 665.451 kb on - strand, within MPMX19_03317at 665.451 kb on - strand, within MPMX19_03317at 665.546 kb on + strand, within MPMX19_03317at 665.589 kb on - strand, within MPMX19_03317at 665.768 kb on + strand, within MPMX19_03317at 665.768 kb on + strand, within MPMX19_03317at 665.768 kb on + strand, within MPMX19_03317at 665.768 kb on + strand, within MPMX19_03317at 665.768 kb on + strand, within MPMX19_03317at 665.768 kb on + strand, within MPMX19_03317at 665.768 kb on + strand, within MPMX19_03317at 665.768 kb on + strand, within MPMX19_03317at 665.771 kb on + strand, within MPMX19_03317at 665.771 kb on + strand, within MPMX19_03317at 665.771 kb on + strand, within MPMX19_03317at 665.771 kb on + strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.786 kb on + strand, within MPMX19_03317at 665.786 kb on + strand, within MPMX19_03317at 665.787 kb on - strand, within MPMX19_03317at 665.787 kb on - strand, within MPMX19_03317at 665.787 kb on - strand, within MPMX19_03317at 665.787 kb on - strand, within MPMX19_03317at 665.828 kb on + strand, within MPMX19_03317at 665.828 kb on + strand, within MPMX19_03317at 665.828 kb on + strand, within MPMX19_03317at 665.829 kb on - strand, within MPMX19_03317at 665.859 kb on + strand, within MPMX19_03317at 665.859 kb on + strand, within MPMX19_03317at 665.859 kb on + strand, within MPMX19_03317at 665.859 kb on + strand, within MPMX19_03317at 665.859 kb on + strand, within MPMX19_03317at 665.860 kb on - strand, within MPMX19_03317at 665.861 kb on + strand, within MPMX19_03317at 665.861 kb on + strand, within MPMX19_03317at 665.861 kb on + strand, within MPMX19_03317at 665.861 kb on + strand, within MPMX19_03317at 665.861 kb on + strand, within MPMX19_03317at 665.861 kb on + strand, within MPMX19_03317at 665.862 kb on - strand, within MPMX19_03317at 665.862 kb on - strand, within MPMX19_03317at 665.862 kb on - strand, within MPMX19_03317at 665.862 kb on - strand, within MPMX19_03317at 665.862 kb on - strand, within MPMX19_03317at 665.862 kb on - strand, within MPMX19_03317at 665.876 kb on + strand, within MPMX19_03317at 666.093 kb on + strand, within MPMX19_03317at 666.173 kb on + strand, within MPMX19_03317at 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.489 kb on + strandat 666.489 kb on + strandat 666.489 kb on + strandat 666.490 kb on - strandat 666.490 kb on - strandat 666.490 kb on - strandat 666.799 kb on + strand, within MPMX19_03318at 666.799 kb on + strand, within MPMX19_03318at 666.799 kb on + strand, within MPMX19_03318at 666.799 kb on + strand, within MPMX19_03318at 666.799 kb on + strand, within MPMX19_03318at 666.800 kb on - strand, within MPMX19_03318at 666.800 kb on - strand, within MPMX19_03318at 666.800 kb on - strand, within MPMX19_03318at 666.800 kb on - strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.112 kb on - strand, within MPMX19_03318at 667.112 kb on - strand, within MPMX19_03318at 667.112 kb on - strand, within MPMX19_03318at 667.112 kb on - strand, within MPMX19_03318at 667.123 kb on + strand, within MPMX19_03318at 667.123 kb on + strand, within MPMX19_03318at 667.123 kb on + strand, within MPMX19_03318at 667.353 kb on + strand, within MPMX19_03318at 667.353 kb on + strand, within MPMX19_03318at 667.353 kb on + strand, within MPMX19_03318at 667.354 kb on - strand, within MPMX19_03318at 667.354 kb on - strand, within MPMX19_03318at 667.354 kb on - strand, within MPMX19_03318at 667.354 kb on - strand, within MPMX19_03318at 667.354 kb on - strand, within MPMX19_03318at 667.354 kb on - strand, within MPMX19_03318

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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664,203 + MPMX19_03316 0.45 +1.0
664,204 - MPMX19_03316 0.45 -1.2
664,218 + MPMX19_03316 0.46 +0.1
664,218 + MPMX19_03316 0.46 +0.2
664,218 + MPMX19_03316 0.46 +1.1
664,218 + MPMX19_03316 0.46 -0.0
664,218 + MPMX19_03316 0.46 -0.9
664,219 - MPMX19_03316 0.46 -0.9
664,546 - MPMX19_03316 0.73 -0.6
664,654 - MPMX19_03316 0.82 -1.1
664,654 - MPMX19_03316 0.82 -0.1
664,654 - MPMX19_03316 0.82 -1.7
664,678 + MPMX19_03316 0.84 -1.3
664,680 + MPMX19_03316 0.84 -0.4
664,680 + MPMX19_03316 0.84 +0.8
664,680 + MPMX19_03316 0.84 -1.3
664,680 + MPMX19_03316 0.84 +1.6
664,681 - MPMX19_03316 0.84 -0.4
664,681 - MPMX19_03316 0.84 -1.0
664,722 + MPMX19_03316 0.87 +1.3
664,723 - MPMX19_03316 0.87 -0.0
664,916 + -2.2
664,917 - +1.1
664,921 - -0.7
664,960 + +1.3
664,961 - -0.6
664,961 - -1.8
664,988 + -1.0
664,988 + -0.8
665,042 + -1.3
665,042 + -0.1
665,042 + +0.6
665,042 + -2.1
665,301 - -0.3
665,301 - -1.0
665,301 - +0.1
665,303 + -0.8
665,303 + -1.3
665,304 - MPMX19_03317 0.10 -0.8
665,304 - MPMX19_03317 0.10 +0.1
665,304 - MPMX19_03317 0.10 -1.2
665,324 + MPMX19_03317 0.12 -0.8
665,324 + MPMX19_03317 0.12 -0.4
665,450 + MPMX19_03317 0.22 +1.2
665,450 + MPMX19_03317 0.22 -0.8
665,451 - MPMX19_03317 0.23 -0.0
665,451 - MPMX19_03317 0.23 -0.8
665,546 + MPMX19_03317 0.31 +0.2
665,589 - MPMX19_03317 0.34 +0.0
665,768 + MPMX19_03317 0.49 -0.8
665,768 + MPMX19_03317 0.49 +0.3
665,768 + MPMX19_03317 0.49 -0.4
665,768 + MPMX19_03317 0.49 -0.6
665,768 + MPMX19_03317 0.49 -0.8
665,768 + MPMX19_03317 0.49 -0.4
665,768 + MPMX19_03317 0.49 -1.8
665,768 + MPMX19_03317 0.49 -0.7
665,771 + MPMX19_03317 0.50 -1.3
665,771 + MPMX19_03317 0.50 +0.1
665,771 + MPMX19_03317 0.50 -0.3
665,771 + MPMX19_03317 0.50 -2.1
665,772 - MPMX19_03317 0.50 +2.3
665,772 - MPMX19_03317 0.50 +0.0
665,772 - MPMX19_03317 0.50 +2.1
665,772 - MPMX19_03317 0.50 -0.1
665,772 - MPMX19_03317 0.50 -1.3
665,772 - MPMX19_03317 0.50 -0.3
665,772 - MPMX19_03317 0.50 -0.1
665,772 - MPMX19_03317 0.50 -1.5
665,772 - MPMX19_03317 0.50 -0.7
665,786 + MPMX19_03317 0.51 -0.8
665,786 + MPMX19_03317 0.51 -0.0
665,787 - MPMX19_03317 0.51 -0.6
665,787 - MPMX19_03317 0.51 -0.7
665,787 - MPMX19_03317 0.51 -0.7
665,787 - MPMX19_03317 0.51 -0.0
665,828 + MPMX19_03317 0.54 -0.0
665,828 + MPMX19_03317 0.54 -0.2
665,828 + MPMX19_03317 0.54 +0.8
665,829 - MPMX19_03317 0.54 -0.1
665,859 + MPMX19_03317 0.57 -0.6
665,859 + MPMX19_03317 0.57 -0.4
665,859 + MPMX19_03317 0.57 -0.9
665,859 + MPMX19_03317 0.57 -0.8
665,859 + MPMX19_03317 0.57 -0.0
665,860 - MPMX19_03317 0.57 +0.1
665,861 + MPMX19_03317 0.57 -1.4
665,861 + MPMX19_03317 0.57 -2.5
665,861 + MPMX19_03317 0.57 -0.2
665,861 + MPMX19_03317 0.57 -0.6
665,861 + MPMX19_03317 0.57 -0.4
665,861 + MPMX19_03317 0.57 -0.5
665,862 - MPMX19_03317 0.57 -1.0
665,862 - MPMX19_03317 0.57 -0.4
665,862 - MPMX19_03317 0.57 -2.4
665,862 - MPMX19_03317 0.57 -1.4
665,862 - MPMX19_03317 0.57 +0.7
665,862 - MPMX19_03317 0.57 +0.2
665,876 + MPMX19_03317 0.58 +0.2
666,093 + MPMX19_03317 0.77 -0.9
666,173 + MPMX19_03317 0.84 +0.5
666,269 + -0.1
666,269 + -0.3
666,269 + +0.4
666,269 + -0.8
666,269 + +0.9
666,269 + -2.0
666,269 + -0.4
666,269 + -0.7
666,269 + +0.7
666,269 + +0.2
666,269 + -0.1
666,269 + +0.6
666,269 + -0.6
666,269 + +0.2
666,269 + -2.1
666,269 + -0.4
666,269 + -0.7
666,269 + -0.6
666,269 + -0.6
666,269 + -0.5
666,269 + -1.4
666,269 + +0.6
666,269 + +0.6
666,269 + -0.7
666,269 + +0.8
666,269 + +0.7
666,269 + -0.4
666,269 + -1.0
666,270 - +1.0
666,270 - -0.7
666,270 - -0.6
666,270 - -0.8
666,270 - -1.1
666,270 - -0.1
666,270 - -0.3
666,270 - +0.8
666,270 - +0.8
666,270 - -0.8
666,270 - +0.4
666,270 - -0.2
666,270 - -1.6
666,270 - +0.4
666,489 + -1.2
666,489 + -0.1
666,489 + -2.6
666,490 - -0.9
666,490 - -0.4
666,490 - +1.6
666,799 + MPMX19_03318 0.25 -0.2
666,799 + MPMX19_03318 0.25 -0.5
666,799 + MPMX19_03318 0.25 -2.2
666,799 + MPMX19_03318 0.25 -0.0
666,799 + MPMX19_03318 0.25 -0.7
666,800 - MPMX19_03318 0.25 -2.0
666,800 - MPMX19_03318 0.25 -2.9
666,800 - MPMX19_03318 0.25 -0.9
666,800 - MPMX19_03318 0.25 -1.8
667,111 + MPMX19_03318 0.46 -1.2
667,111 + MPMX19_03318 0.46 -0.0
667,111 + MPMX19_03318 0.46 -0.7
667,111 + MPMX19_03318 0.46 -2.5
667,111 + MPMX19_03318 0.46 +0.2
667,111 + MPMX19_03318 0.46 -0.3
667,111 + MPMX19_03318 0.46 +1.2
667,111 + MPMX19_03318 0.46 -1.4
667,111 + MPMX19_03318 0.46 +0.2
667,112 - MPMX19_03318 0.46 -1.2
667,112 - MPMX19_03318 0.46 +0.2
667,112 - MPMX19_03318 0.46 -1.0
667,112 - MPMX19_03318 0.46 -1.9
667,123 + MPMX19_03318 0.47 +0.5
667,123 + MPMX19_03318 0.47 -0.4
667,123 + MPMX19_03318 0.47 +0.2
667,353 + MPMX19_03318 0.62 -0.2
667,353 + MPMX19_03318 0.62 -1.9
667,353 + MPMX19_03318 0.62 -0.8
667,354 - MPMX19_03318 0.62 +0.7
667,354 - MPMX19_03318 0.62 -0.4
667,354 - MPMX19_03318 0.62 +1.2
667,354 - MPMX19_03318 0.62 +0.6
667,354 - MPMX19_03318 0.62 -0.5
667,354 - MPMX19_03318 0.62 -1.2

Or see this region's nucleotide sequence