Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03306 and MPMX19_03307 are separated by 24 nucleotides MPMX19_03307 and MPMX19_03308 are separated by 42 nucleotides MPMX19_03308 and MPMX19_03309 are separated by 4 nucleotides
MPMX19_03306: MPMX19_03306 - hypothetical protein, at 652,454 to 653,635
_03306
MPMX19_03307: MPMX19_03307 - Galactarate dehydratase (L-threo-forming), at 653,660 to 655,186
_03307
MPMX19_03308: MPMX19_03308 - hypothetical protein, at 655,229 to 656,044
_03308
MPMX19_03309: MPMX19_03309 - Pyridoxal 4-dehydrogenase, at 656,049 to 657,074
_03309
Position (kb) 653
654
655
656 Strain fitness (log2 ratio) -2
-1
0
1
2 at 652.941 kb on + strand, within MPMX19_03306 at 652.942 kb on - strand, within MPMX19_03306 at 652.942 kb on - strand, within MPMX19_03306 at 652.942 kb on - strand, within MPMX19_03306 at 652.967 kb on + strand, within MPMX19_03306 at 652.968 kb on - strand, within MPMX19_03306 at 653.850 kb on + strand, within MPMX19_03307 at 653.850 kb on + strand, within MPMX19_03307 at 653.850 kb on + strand, within MPMX19_03307 at 653.850 kb on + strand, within MPMX19_03307 at 653.850 kb on + strand, within MPMX19_03307 at 653.850 kb on + strand, within MPMX19_03307 at 653.851 kb on - strand, within MPMX19_03307 at 653.851 kb on - strand, within MPMX19_03307 at 653.851 kb on - strand, within MPMX19_03307 at 653.851 kb on - strand, within MPMX19_03307 at 653.851 kb on - strand, within MPMX19_03307 at 653.851 kb on - strand, within MPMX19_03307 at 653.851 kb on - strand, within MPMX19_03307 at 653.901 kb on + strand, within MPMX19_03307 at 653.901 kb on + strand, within MPMX19_03307 at 653.902 kb on - strand, within MPMX19_03307 at 653.902 kb on - strand, within MPMX19_03307 at 653.980 kb on - strand, within MPMX19_03307 at 654.030 kb on + strand, within MPMX19_03307 at 654.031 kb on - strand, within MPMX19_03307 at 654.168 kb on + strand, within MPMX19_03307 at 654.168 kb on + strand, within MPMX19_03307 at 654.168 kb on + strand, within MPMX19_03307 at 654.168 kb on + strand, within MPMX19_03307 at 654.168 kb on + strand, within MPMX19_03307 at 654.168 kb on + strand, within MPMX19_03307 at 654.168 kb on + strand, within MPMX19_03307 at 654.168 kb on + strand, within MPMX19_03307 at 654.168 kb on + strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.255 kb on + strand, within MPMX19_03307 at 654.255 kb on + strand, within MPMX19_03307 at 654.255 kb on + strand, within MPMX19_03307 at 654.352 kb on - strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.811 kb on - strand, within MPMX19_03307 at 654.811 kb on - strand, within MPMX19_03307 at 654.811 kb on - strand, within MPMX19_03307 at 654.811 kb on - strand, within MPMX19_03307 at 654.811 kb on - strand, within MPMX19_03307 at 654.811 kb on - strand, within MPMX19_03307 at 654.811 kb on - strand, within MPMX19_03307 at 654.811 kb on - strand, within MPMX19_03307 at 654.999 kb on + strand, within MPMX19_03307 at 654.999 kb on + strand, within MPMX19_03307 at 654.999 kb on + strand, within MPMX19_03307 at 655.000 kb on - strand, within MPMX19_03307 at 655.000 kb on - strand, within MPMX19_03307 at 655.000 kb on - strand, within MPMX19_03307 at 655.000 kb on - strand, within MPMX19_03307 at 655.000 kb on - strand, within MPMX19_03307 at 655.242 kb on + strand at 655.243 kb on - strand at 655.410 kb on + strand, within MPMX19_03308 at 655.410 kb on + strand, within MPMX19_03308 at 655.410 kb on + strand, within MPMX19_03308 at 655.410 kb on + strand, within MPMX19_03308 at 655.411 kb on - strand, within MPMX19_03308 at 655.411 kb on - strand, within MPMX19_03308 at 655.411 kb on - strand, within MPMX19_03308 at 655.411 kb on - strand, within MPMX19_03308 at 655.411 kb on - strand, within MPMX19_03308 at 655.411 kb on - strand, within MPMX19_03308 at 655.666 kb on + strand, within MPMX19_03308 at 655.667 kb on - strand, within MPMX19_03308
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 652,941 + MPMX19_03306 0.41 +1.3 652,942 - MPMX19_03306 0.41 +0.1 652,942 - MPMX19_03306 0.41 -0.8 652,942 - MPMX19_03306 0.41 -1.1 652,967 + MPMX19_03306 0.43 -0.5 652,968 - MPMX19_03306 0.43 -1.9 653,850 + MPMX19_03307 0.12 -0.0 653,850 + MPMX19_03307 0.12 +0.6 653,850 + MPMX19_03307 0.12 +0.2 653,850 + MPMX19_03307 0.12 -0.0 653,850 + MPMX19_03307 0.12 -1.4 653,850 + MPMX19_03307 0.12 +1.0 653,851 - MPMX19_03307 0.13 +0.3 653,851 - MPMX19_03307 0.13 -0.2 653,851 - MPMX19_03307 0.13 -1.0 653,851 - MPMX19_03307 0.13 +0.7 653,851 - MPMX19_03307 0.13 +0.6 653,851 - MPMX19_03307 0.13 -0.5 653,851 - MPMX19_03307 0.13 -0.1 653,901 + MPMX19_03307 0.16 -0.2 653,901 + MPMX19_03307 0.16 +1.8 653,902 - MPMX19_03307 0.16 +0.4 653,902 - MPMX19_03307 0.16 +0.6 653,980 - MPMX19_03307 0.21 -0.6 654,030 + MPMX19_03307 0.24 +0.1 654,031 - MPMX19_03307 0.24 -0.3 654,168 + MPMX19_03307 0.33 -1.6 654,168 + MPMX19_03307 0.33 +1.0 654,168 + MPMX19_03307 0.33 +0.5 654,168 + MPMX19_03307 0.33 +0.1 654,168 + MPMX19_03307 0.33 +0.1 654,168 + MPMX19_03307 0.33 +0.5 654,168 + MPMX19_03307 0.33 -0.6 654,168 + MPMX19_03307 0.33 -0.1 654,168 + MPMX19_03307 0.33 +0.6 654,169 - MPMX19_03307 0.33 +0.6 654,169 - MPMX19_03307 0.33 -1.4 654,169 - MPMX19_03307 0.33 +0.1 654,169 - MPMX19_03307 0.33 +1.0 654,169 - MPMX19_03307 0.33 -0.6 654,169 - MPMX19_03307 0.33 -1.7 654,169 - MPMX19_03307 0.33 -0.9 654,169 - MPMX19_03307 0.33 -0.3 654,169 - MPMX19_03307 0.33 +0.4 654,169 - MPMX19_03307 0.33 +1.6 654,169 - MPMX19_03307 0.33 -1.0 654,169 - MPMX19_03307 0.33 -0.6 654,169 - MPMX19_03307 0.33 -0.5 654,255 + MPMX19_03307 0.39 -0.8 654,255 + MPMX19_03307 0.39 +0.1 654,255 + MPMX19_03307 0.39 -1.6 654,352 - MPMX19_03307 0.45 -1.4 654,810 + MPMX19_03307 0.75 -1.7 654,810 + MPMX19_03307 0.75 +1.0 654,810 + MPMX19_03307 0.75 -0.9 654,810 + MPMX19_03307 0.75 +0.5 654,810 + MPMX19_03307 0.75 -0.8 654,810 + MPMX19_03307 0.75 +0.4 654,810 + MPMX19_03307 0.75 -0.6 654,810 + MPMX19_03307 0.75 +0.6 654,810 + MPMX19_03307 0.75 +0.3 654,810 + MPMX19_03307 0.75 -1.9 654,810 + MPMX19_03307 0.75 -0.6 654,810 + MPMX19_03307 0.75 -0.6 654,811 - MPMX19_03307 0.75 -1.0 654,811 - MPMX19_03307 0.75 -0.0 654,811 - MPMX19_03307 0.75 -0.9 654,811 - MPMX19_03307 0.75 +0.8 654,811 - MPMX19_03307 0.75 -0.2 654,811 - MPMX19_03307 0.75 -1.2 654,811 - MPMX19_03307 0.75 +0.2 654,811 - MPMX19_03307 0.75 -0.4 654,999 + MPMX19_03307 0.88 +1.2 654,999 + MPMX19_03307 0.88 -0.6 654,999 + MPMX19_03307 0.88 -1.1 655,000 - MPMX19_03307 0.88 -0.4 655,000 - MPMX19_03307 0.88 +1.6 655,000 - MPMX19_03307 0.88 -0.9 655,000 - MPMX19_03307 0.88 -0.9 655,000 - MPMX19_03307 0.88 +1.6 655,242 + -0.8 655,243 - -0.2 655,410 + MPMX19_03308 0.22 +0.1 655,410 + MPMX19_03308 0.22 +1.2 655,410 + MPMX19_03308 0.22 -0.2 655,410 + MPMX19_03308 0.22 +0.1 655,411 - MPMX19_03308 0.22 -0.2 655,411 - MPMX19_03308 0.22 -0.9 655,411 - MPMX19_03308 0.22 -1.4 655,411 - MPMX19_03308 0.22 -0.2 655,411 - MPMX19_03308 0.22 -0.4 655,411 - MPMX19_03308 0.22 +0.9 655,666 + MPMX19_03308 0.54 +1.2 655,667 - MPMX19_03308 0.54 +0.6
Or see this region's nucleotide sequence