Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03300

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03299 and MPMX19_03300 are separated by 227 nucleotidesMPMX19_03300 and MPMX19_03301 overlap by 4 nucleotidesMPMX19_03301 and MPMX19_03302 overlap by 4 nucleotides MPMX19_03299: MPMX19_03299 - 4-hydroxy-tetrahydrodipicolinate synthase, at 645,576 to 646,475 _03299 MPMX19_03300: MPMX19_03300 - Erythritol/L-threitol-binding protein, at 646,703 to 648,055 _03300 MPMX19_03301: MPMX19_03301 - Melibiose/raffinose/stachyose import permease protein MelD, at 648,052 to 648,984 _03301 MPMX19_03302: MPMX19_03302 - Trehalose transport system permease protein SugB, at 648,981 to 649,811 _03302 Position (kb) 646 647 648 649Strain fitness (log2 ratio) -2 -1 0 1 2at 645.934 kb on + strand, within MPMX19_03299at 645.934 kb on + strand, within MPMX19_03299at 645.934 kb on + strand, within MPMX19_03299at 645.934 kb on + strand, within MPMX19_03299at 645.934 kb on + strand, within MPMX19_03299at 645.934 kb on + strand, within MPMX19_03299at 645.934 kb on + strand, within MPMX19_03299at 645.935 kb on - strand, within MPMX19_03299at 645.935 kb on - strand, within MPMX19_03299at 645.935 kb on - strand, within MPMX19_03299at 645.935 kb on - strand, within MPMX19_03299at 645.935 kb on - strand, within MPMX19_03299at 646.048 kb on + strand, within MPMX19_03299at 646.048 kb on + strand, within MPMX19_03299at 646.049 kb on - strand, within MPMX19_03299at 646.049 kb on - strand, within MPMX19_03299at 646.049 kb on - strand, within MPMX19_03299at 646.049 kb on - strand, within MPMX19_03299at 646.049 kb on - strand, within MPMX19_03299at 646.138 kb on + strand, within MPMX19_03299at 646.138 kb on + strand, within MPMX19_03299at 646.138 kb on + strand, within MPMX19_03299at 646.138 kb on + strand, within MPMX19_03299at 646.138 kb on + strand, within MPMX19_03299at 646.139 kb on - strand, within MPMX19_03299at 646.139 kb on - strand, within MPMX19_03299at 646.139 kb on - strand, within MPMX19_03299at 646.139 kb on - strand, within MPMX19_03299at 646.139 kb on - strand, within MPMX19_03299at 646.583 kb on - strandat 646.841 kb on + strand, within MPMX19_03300at 646.841 kb on + strand, within MPMX19_03300at 646.841 kb on + strand, within MPMX19_03300at 646.841 kb on + strand, within MPMX19_03300at 646.842 kb on - strand, within MPMX19_03300at 646.842 kb on - strand, within MPMX19_03300at 646.842 kb on - strand, within MPMX19_03300at 646.842 kb on - strand, within MPMX19_03300at 647.036 kb on + strand, within MPMX19_03300at 647.036 kb on + strand, within MPMX19_03300at 647.036 kb on + strand, within MPMX19_03300at 647.037 kb on - strand, within MPMX19_03300at 647.037 kb on - strand, within MPMX19_03300at 647.037 kb on - strand, within MPMX19_03300at 647.037 kb on - strand, within MPMX19_03300at 647.037 kb on - strand, within MPMX19_03300at 647.037 kb on - strand, within MPMX19_03300at 647.037 kb on - strand, within MPMX19_03300at 647.327 kb on + strand, within MPMX19_03300at 647.327 kb on + strand, within MPMX19_03300at 647.327 kb on + strand, within MPMX19_03300at 647.327 kb on + strand, within MPMX19_03300at 647.327 kb on + strand, within MPMX19_03300at 647.328 kb on - strand, within MPMX19_03300at 647.328 kb on - strand, within MPMX19_03300at 647.394 kb on - strand, within MPMX19_03300at 647.637 kb on - strand, within MPMX19_03300at 647.732 kb on + strand, within MPMX19_03300at 647.732 kb on + strand, within MPMX19_03300at 647.732 kb on + strand, within MPMX19_03300at 647.733 kb on - strand, within MPMX19_03300at 647.733 kb on - strand, within MPMX19_03300at 647.738 kb on + strand, within MPMX19_03300at 647.738 kb on + strand, within MPMX19_03300at 647.738 kb on + strand, within MPMX19_03300at 647.738 kb on + strand, within MPMX19_03300at 647.738 kb on + strand, within MPMX19_03300at 647.739 kb on - strand, within MPMX19_03300at 648.127 kb on + strandat 648.127 kb on + strandat 648.128 kb on - strandat 648.128 kb on - strandat 648.259 kb on + strand, within MPMX19_03301at 648.259 kb on + strand, within MPMX19_03301at 648.259 kb on + strand, within MPMX19_03301at 648.259 kb on + strand, within MPMX19_03301at 648.259 kb on + strand, within MPMX19_03301at 648.259 kb on + strand, within MPMX19_03301at 648.259 kb on + strand, within MPMX19_03301at 648.259 kb on + strand, within MPMX19_03301at 648.260 kb on - strand, within MPMX19_03301at 648.260 kb on - strand, within MPMX19_03301at 648.260 kb on - strand, within MPMX19_03301at 648.260 kb on - strand, within MPMX19_03301at 648.260 kb on - strand, within MPMX19_03301at 648.260 kb on - strand, within MPMX19_03301at 648.260 kb on - strand, within MPMX19_03301at 648.316 kb on + strand, within MPMX19_03301at 648.317 kb on - strand, within MPMX19_03301at 648.317 kb on - strand, within MPMX19_03301at 648.317 kb on - strand, within MPMX19_03301at 648.499 kb on + strand, within MPMX19_03301at 648.499 kb on + strand, within MPMX19_03301at 648.500 kb on - strand, within MPMX19_03301at 648.500 kb on - strand, within MPMX19_03301at 648.500 kb on - strand, within MPMX19_03301at 648.500 kb on - strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.541 kb on + strand, within MPMX19_03301at 648.542 kb on - strand, within MPMX19_03301at 648.542 kb on - strand, within MPMX19_03301at 648.542 kb on - strand, within MPMX19_03301at 648.542 kb on - strand, within MPMX19_03301at 648.542 kb on - strand, within MPMX19_03301at 648.542 kb on - strand, within MPMX19_03301at 648.542 kb on - strand, within MPMX19_03301at 648.542 kb on - strand, within MPMX19_03301at 648.542 kb on - strand, within MPMX19_03301at 648.542 kb on - strand, within MPMX19_03301at 648.652 kb on + strand, within MPMX19_03301at 648.653 kb on - strand, within MPMX19_03301at 648.653 kb on - strand, within MPMX19_03301at 648.731 kb on + strand, within MPMX19_03301at 648.731 kb on + strand, within MPMX19_03301at 648.731 kb on + strand, within MPMX19_03301at 648.731 kb on + strand, within MPMX19_03301at 648.732 kb on - strand, within MPMX19_03301at 648.732 kb on - strand, within MPMX19_03301at 648.732 kb on - strand, within MPMX19_03301at 648.787 kb on + strand, within MPMX19_03301at 648.788 kb on - strand, within MPMX19_03301at 648.788 kb on - strand, within MPMX19_03301at 648.788 kb on - strand, within MPMX19_03301at 648.788 kb on - strand, within MPMX19_03301at 648.788 kb on - strand, within MPMX19_03301at 648.838 kb on + strand, within MPMX19_03301at 648.838 kb on + strand, within MPMX19_03301at 648.838 kb on + strand, within MPMX19_03301at 648.838 kb on + strand, within MPMX19_03301at 648.839 kb on - strand, within MPMX19_03301at 648.839 kb on - strand, within MPMX19_03301at 648.839 kb on - strand, within MPMX19_03301at 648.839 kb on - strand, within MPMX19_03301at 648.839 kb on - strand, within MPMX19_03301at 648.839 kb on - strand, within MPMX19_03301at 648.844 kb on + strand, within MPMX19_03301at 648.844 kb on + strand, within MPMX19_03301at 648.844 kb on + strand, within MPMX19_03301at 648.844 kb on + strand, within MPMX19_03301at 648.844 kb on + strand, within MPMX19_03301at 648.845 kb on - strand, within MPMX19_03301at 648.845 kb on - strand, within MPMX19_03301at 648.862 kb on + strand, within MPMX19_03301at 648.862 kb on + strand, within MPMX19_03301at 648.863 kb on - strand, within MPMX19_03301at 648.863 kb on - strand, within MPMX19_03301at 648.863 kb on - strand, within MPMX19_03301at 648.863 kb on - strand, within MPMX19_03301at 648.863 kb on - strand, within MPMX19_03301at 648.863 kb on - strand, within MPMX19_03301at 648.863 kb on - strand, within MPMX19_03301at 648.863 kb on - strand, within MPMX19_03301at 648.865 kb on + strand, within MPMX19_03301at 648.865 kb on + strand, within MPMX19_03301at 648.865 kb on + strand, within MPMX19_03301at 648.865 kb on + strand, within MPMX19_03301at 648.865 kb on + strand, within MPMX19_03301at 648.865 kb on + strand, within MPMX19_03301at 648.865 kb on + strand, within MPMX19_03301at 648.865 kb on + strand, within MPMX19_03301at 648.865 kb on + strand, within MPMX19_03301at 648.865 kb on + strand, within MPMX19_03301at 648.866 kb on - strand, within MPMX19_03301at 648.866 kb on - strand, within MPMX19_03301at 648.866 kb on - strand, within MPMX19_03301at 648.866 kb on - strand, within MPMX19_03301at 648.877 kb on + strand, within MPMX19_03301at 648.940 kb on + strandat 648.940 kb on + strandat 648.941 kb on - strandat 648.967 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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645,934 + MPMX19_03299 0.40 -2.0
645,934 + MPMX19_03299 0.40 +0.1
645,934 + MPMX19_03299 0.40 +0.7
645,934 + MPMX19_03299 0.40 +1.6
645,934 + MPMX19_03299 0.40 -0.1
645,934 + MPMX19_03299 0.40 +0.6
645,934 + MPMX19_03299 0.40 -0.7
645,935 - MPMX19_03299 0.40 -2.6
645,935 - MPMX19_03299 0.40 -1.0
645,935 - MPMX19_03299 0.40 +2.0
645,935 - MPMX19_03299 0.40 +0.3
645,935 - MPMX19_03299 0.40 +0.8
646,048 + MPMX19_03299 0.52 +1.0
646,048 + MPMX19_03299 0.52 -1.3
646,049 - MPMX19_03299 0.53 -0.9
646,049 - MPMX19_03299 0.53 -1.1
646,049 - MPMX19_03299 0.53 -1.7
646,049 - MPMX19_03299 0.53 -1.4
646,049 - MPMX19_03299 0.53 +0.3
646,138 + MPMX19_03299 0.62 -0.0
646,138 + MPMX19_03299 0.62 -0.2
646,138 + MPMX19_03299 0.62 +0.3
646,138 + MPMX19_03299 0.62 -0.4
646,138 + MPMX19_03299 0.62 -0.2
646,139 - MPMX19_03299 0.63 -0.5
646,139 - MPMX19_03299 0.63 -1.2
646,139 - MPMX19_03299 0.63 -0.2
646,139 - MPMX19_03299 0.63 -2.7
646,139 - MPMX19_03299 0.63 -0.6
646,583 - -0.8
646,841 + MPMX19_03300 0.10 -0.9
646,841 + MPMX19_03300 0.10 -1.3
646,841 + MPMX19_03300 0.10 -0.2
646,841 + MPMX19_03300 0.10 -2.2
646,842 - MPMX19_03300 0.10 +1.6
646,842 - MPMX19_03300 0.10 -0.0
646,842 - MPMX19_03300 0.10 +1.0
646,842 - MPMX19_03300 0.10 -1.0
647,036 + MPMX19_03300 0.25 -0.0
647,036 + MPMX19_03300 0.25 -0.2
647,036 + MPMX19_03300 0.25 -0.3
647,037 - MPMX19_03300 0.25 -1.3
647,037 - MPMX19_03300 0.25 -1.4
647,037 - MPMX19_03300 0.25 -1.7
647,037 - MPMX19_03300 0.25 -0.8
647,037 - MPMX19_03300 0.25 -0.6
647,037 - MPMX19_03300 0.25 -0.4
647,037 - MPMX19_03300 0.25 +0.8
647,327 + MPMX19_03300 0.46 +0.1
647,327 + MPMX19_03300 0.46 -0.1
647,327 + MPMX19_03300 0.46 +0.9
647,327 + MPMX19_03300 0.46 +0.1
647,327 + MPMX19_03300 0.46 -0.0
647,328 - MPMX19_03300 0.46 -1.7
647,328 - MPMX19_03300 0.46 -2.0
647,394 - MPMX19_03300 0.51 -1.9
647,637 - MPMX19_03300 0.69 -0.0
647,732 + MPMX19_03300 0.76 -0.7
647,732 + MPMX19_03300 0.76 +0.7
647,732 + MPMX19_03300 0.76 +0.8
647,733 - MPMX19_03300 0.76 -0.2
647,733 - MPMX19_03300 0.76 -0.2
647,738 + MPMX19_03300 0.76 +0.4
647,738 + MPMX19_03300 0.76 +0.3
647,738 + MPMX19_03300 0.76 -1.2
647,738 + MPMX19_03300 0.76 +0.7
647,738 + MPMX19_03300 0.76 -0.5
647,739 - MPMX19_03300 0.77 -0.5
648,127 + -1.7
648,127 + -1.2
648,128 - +0.1
648,128 - +0.7
648,259 + MPMX19_03301 0.22 -0.2
648,259 + MPMX19_03301 0.22 -1.2
648,259 + MPMX19_03301 0.22 +0.4
648,259 + MPMX19_03301 0.22 +0.3
648,259 + MPMX19_03301 0.22 -0.2
648,259 + MPMX19_03301 0.22 +0.3
648,259 + MPMX19_03301 0.22 -2.1
648,259 + MPMX19_03301 0.22 -0.7
648,260 - MPMX19_03301 0.22 -2.0
648,260 - MPMX19_03301 0.22 -0.2
648,260 - MPMX19_03301 0.22 -0.7
648,260 - MPMX19_03301 0.22 +0.9
648,260 - MPMX19_03301 0.22 -0.2
648,260 - MPMX19_03301 0.22 +0.0
648,260 - MPMX19_03301 0.22 -0.7
648,316 + MPMX19_03301 0.28 -0.9
648,317 - MPMX19_03301 0.28 +1.0
648,317 - MPMX19_03301 0.28 -0.1
648,317 - MPMX19_03301 0.28 -1.2
648,499 + MPMX19_03301 0.48 +0.8
648,499 + MPMX19_03301 0.48 -0.4
648,500 - MPMX19_03301 0.48 -0.7
648,500 - MPMX19_03301 0.48 -0.7
648,500 - MPMX19_03301 0.48 -0.4
648,500 - MPMX19_03301 0.48 -0.3
648,541 + MPMX19_03301 0.52 -0.1
648,541 + MPMX19_03301 0.52 -0.6
648,541 + MPMX19_03301 0.52 +0.1
648,541 + MPMX19_03301 0.52 +1.4
648,541 + MPMX19_03301 0.52 +0.2
648,541 + MPMX19_03301 0.52 -1.2
648,541 + MPMX19_03301 0.52 +0.4
648,541 + MPMX19_03301 0.52 +2.1
648,541 + MPMX19_03301 0.52 +0.6
648,541 + MPMX19_03301 0.52 +0.5
648,541 + MPMX19_03301 0.52 +0.1
648,541 + MPMX19_03301 0.52 -0.1
648,541 + MPMX19_03301 0.52 -0.0
648,542 - MPMX19_03301 0.53 +0.6
648,542 - MPMX19_03301 0.53 +2.6
648,542 - MPMX19_03301 0.53 -0.2
648,542 - MPMX19_03301 0.53 +0.9
648,542 - MPMX19_03301 0.53 -1.7
648,542 - MPMX19_03301 0.53 -0.9
648,542 - MPMX19_03301 0.53 -0.5
648,542 - MPMX19_03301 0.53 -0.4
648,542 - MPMX19_03301 0.53 -0.2
648,542 - MPMX19_03301 0.53 -0.9
648,652 + MPMX19_03301 0.64 -0.4
648,653 - MPMX19_03301 0.64 -0.6
648,653 - MPMX19_03301 0.64 -0.7
648,731 + MPMX19_03301 0.73 -0.1
648,731 + MPMX19_03301 0.73 -0.5
648,731 + MPMX19_03301 0.73 +0.4
648,731 + MPMX19_03301 0.73 +0.4
648,732 - MPMX19_03301 0.73 -0.1
648,732 - MPMX19_03301 0.73 -0.2
648,732 - MPMX19_03301 0.73 +0.3
648,787 + MPMX19_03301 0.79 -0.4
648,788 - MPMX19_03301 0.79 -0.7
648,788 - MPMX19_03301 0.79 -0.4
648,788 - MPMX19_03301 0.79 -0.5
648,788 - MPMX19_03301 0.79 -0.0
648,788 - MPMX19_03301 0.79 -1.6
648,838 + MPMX19_03301 0.84 -2.1
648,838 + MPMX19_03301 0.84 -0.6
648,838 + MPMX19_03301 0.84 +0.7
648,838 + MPMX19_03301 0.84 -0.2
648,839 - MPMX19_03301 0.84 +0.4
648,839 - MPMX19_03301 0.84 +0.2
648,839 - MPMX19_03301 0.84 -0.9
648,839 - MPMX19_03301 0.84 -2.7
648,839 - MPMX19_03301 0.84 -0.7
648,839 - MPMX19_03301 0.84 +0.4
648,844 + MPMX19_03301 0.85 -0.0
648,844 + MPMX19_03301 0.85 +0.9
648,844 + MPMX19_03301 0.85 -1.6
648,844 + MPMX19_03301 0.85 -0.4
648,844 + MPMX19_03301 0.85 -0.6
648,845 - MPMX19_03301 0.85 +0.3
648,845 - MPMX19_03301 0.85 +0.4
648,862 + MPMX19_03301 0.87 -0.0
648,862 + MPMX19_03301 0.87 -2.4
648,863 - MPMX19_03301 0.87 -0.2
648,863 - MPMX19_03301 0.87 -1.3
648,863 - MPMX19_03301 0.87 -0.1
648,863 - MPMX19_03301 0.87 -1.4
648,863 - MPMX19_03301 0.87 -0.9
648,863 - MPMX19_03301 0.87 -0.7
648,863 - MPMX19_03301 0.87 +0.5
648,863 - MPMX19_03301 0.87 -1.7
648,865 + MPMX19_03301 0.87 -0.2
648,865 + MPMX19_03301 0.87 +0.1
648,865 + MPMX19_03301 0.87 -0.1
648,865 + MPMX19_03301 0.87 -0.0
648,865 + MPMX19_03301 0.87 -1.2
648,865 + MPMX19_03301 0.87 -0.4
648,865 + MPMX19_03301 0.87 -0.2
648,865 + MPMX19_03301 0.87 +0.6
648,865 + MPMX19_03301 0.87 +0.3
648,865 + MPMX19_03301 0.87 +0.5
648,866 - MPMX19_03301 0.87 +0.6
648,866 - MPMX19_03301 0.87 +1.6
648,866 - MPMX19_03301 0.87 -0.9
648,866 - MPMX19_03301 0.87 +0.5
648,877 + MPMX19_03301 0.88 -0.2
648,940 + -1.0
648,940 + -0.3
648,941 - +1.3
648,967 - +1.4

Or see this region's nucleotide sequence