Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03288

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03287 and MPMX19_03288 are separated by 17 nucleotidesMPMX19_03288 and MPMX19_03289 are separated by 132 nucleotides MPMX19_03287: MPMX19_03287 - 6-aminohexanoate-cyclic-dimer hydrolase, at 633,615 to 635,042 _03287 MPMX19_03288: MPMX19_03288 - Spermidine/putrescine import ATP-binding protein PotA, at 635,060 to 636,169 _03288 MPMX19_03289: MPMX19_03289 - Non-heme chloroperoxidase, at 636,302 to 637,330 _03289 Position (kb) 635 636 637Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 634.311 kb on + strand, within MPMX19_03287at 634.311 kb on + strand, within MPMX19_03287at 634.311 kb on + strand, within MPMX19_03287at 634.312 kb on - strand, within MPMX19_03287at 634.312 kb on - strand, within MPMX19_03287at 634.515 kb on + strand, within MPMX19_03287at 634.515 kb on + strand, within MPMX19_03287at 634.515 kb on + strand, within MPMX19_03287at 634.515 kb on + strand, within MPMX19_03287at 634.515 kb on + strand, within MPMX19_03287at 634.515 kb on + strand, within MPMX19_03287at 634.516 kb on - strand, within MPMX19_03287at 634.516 kb on - strand, within MPMX19_03287at 634.527 kb on + strand, within MPMX19_03287at 634.527 kb on + strand, within MPMX19_03287at 634.674 kb on + strand, within MPMX19_03287at 634.675 kb on - strand, within MPMX19_03287at 634.737 kb on + strand, within MPMX19_03287at 634.738 kb on - strand, within MPMX19_03287at 634.738 kb on - strand, within MPMX19_03287at 635.053 kb on + strandat 635.053 kb on + strandat 635.053 kb on + strandat 635.053 kb on + strandat 635.054 kb on - strandat 635.105 kb on + strandat 635.105 kb on + strandat 635.105 kb on + strandat 635.105 kb on + strandat 635.105 kb on + strandat 635.105 kb on + strandat 635.105 kb on + strandat 635.105 kb on + strandat 635.105 kb on + strandat 635.105 kb on + strandat 635.106 kb on - strandat 635.106 kb on - strandat 635.106 kb on - strandat 635.106 kb on - strandat 635.321 kb on + strand, within MPMX19_03288at 635.321 kb on + strand, within MPMX19_03288at 635.321 kb on + strand, within MPMX19_03288at 635.321 kb on + strand, within MPMX19_03288at 635.321 kb on + strand, within MPMX19_03288at 635.321 kb on + strand, within MPMX19_03288at 635.321 kb on + strand, within MPMX19_03288at 635.321 kb on + strand, within MPMX19_03288at 635.322 kb on - strand, within MPMX19_03288at 635.322 kb on - strand, within MPMX19_03288at 635.322 kb on - strand, within MPMX19_03288at 635.322 kb on - strand, within MPMX19_03288at 635.322 kb on - strand, within MPMX19_03288at 635.322 kb on - strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.636 kb on + strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.637 kb on - strand, within MPMX19_03288at 635.735 kb on + strand, within MPMX19_03288at 635.736 kb on - strand, within MPMX19_03288at 635.736 kb on - strand, within MPMX19_03288at 635.736 kb on - strand, within MPMX19_03288at 635.736 kb on - strand, within MPMX19_03288at 636.008 kb on + strand, within MPMX19_03288at 636.008 kb on + strand, within MPMX19_03288at 636.008 kb on + strand, within MPMX19_03288at 636.008 kb on + strand, within MPMX19_03288at 636.008 kb on + strand, within MPMX19_03288at 636.009 kb on - strand, within MPMX19_03288at 636.009 kb on - strand, within MPMX19_03288at 636.009 kb on - strand, within MPMX19_03288at 636.009 kb on - strand, within MPMX19_03288at 636.009 kb on - strand, within MPMX19_03288at 636.009 kb on - strand, within MPMX19_03288at 636.117 kb on - strandat 636.213 kb on + strandat 636.214 kb on - strandat 636.214 kb on - strandat 636.242 kb on + strandat 636.242 kb on + strandat 636.242 kb on + strandat 636.242 kb on + strandat 636.242 kb on + strandat 636.242 kb on + strandat 636.242 kb on + strandat 636.242 kb on + strandat 636.242 kb on + strandat 636.242 kb on + strandat 636.242 kb on + strandat 636.242 kb on + strandat 636.242 kb on + strandat 636.243 kb on - strandat 636.243 kb on - strandat 636.243 kb on - strandat 636.243 kb on - strandat 636.243 kb on - strandat 636.243 kb on - strandat 636.243 kb on - strandat 636.243 kb on - strandat 636.243 kb on - strandat 636.381 kb on + strandat 636.543 kb on + strand, within MPMX19_03289at 636.543 kb on + strand, within MPMX19_03289at 636.543 kb on + strand, within MPMX19_03289at 636.543 kb on + strand, within MPMX19_03289at 636.543 kb on + strand, within MPMX19_03289at 636.544 kb on - strand, within MPMX19_03289at 636.544 kb on - strand, within MPMX19_03289at 636.544 kb on - strand, within MPMX19_03289at 636.544 kb on - strand, within MPMX19_03289at 636.586 kb on + strand, within MPMX19_03289at 636.587 kb on - strand, within MPMX19_03289at 636.633 kb on + strand, within MPMX19_03289at 636.633 kb on + strand, within MPMX19_03289at 636.633 kb on + strand, within MPMX19_03289at 636.633 kb on + strand, within MPMX19_03289at 636.633 kb on + strand, within MPMX19_03289at 636.633 kb on + strand, within MPMX19_03289at 636.634 kb on - strand, within MPMX19_03289at 636.634 kb on - strand, within MPMX19_03289at 636.634 kb on - strand, within MPMX19_03289at 636.634 kb on - strand, within MPMX19_03289at 636.816 kb on + strand, within MPMX19_03289at 636.816 kb on + strand, within MPMX19_03289at 636.816 kb on + strand, within MPMX19_03289at 636.816 kb on + strand, within MPMX19_03289at 636.816 kb on + strand, within MPMX19_03289at 636.817 kb on - strand, within MPMX19_03289at 636.817 kb on - strand, within MPMX19_03289at 636.909 kb on + strand, within MPMX19_03289at 636.909 kb on + strand, within MPMX19_03289at 636.909 kb on + strand, within MPMX19_03289at 636.910 kb on - strand, within MPMX19_03289at 636.910 kb on - strand, within MPMX19_03289at 636.910 kb on - strand, within MPMX19_03289at 636.910 kb on - strand, within MPMX19_03289at 636.910 kb on - strand, within MPMX19_03289at 636.910 kb on - strand, within MPMX19_03289at 637.092 kb on + strand, within MPMX19_03289at 637.092 kb on + strand, within MPMX19_03289at 637.093 kb on - strand, within MPMX19_03289at 637.093 kb on - strand, within MPMX19_03289at 637.095 kb on + strand, within MPMX19_03289at 637.095 kb on + strand, within MPMX19_03289at 637.095 kb on + strand, within MPMX19_03289at 637.095 kb on + strand, within MPMX19_03289at 637.095 kb on + strand, within MPMX19_03289at 637.095 kb on + strand, within MPMX19_03289at 637.095 kb on + strand, within MPMX19_03289at 637.095 kb on + strand, within MPMX19_03289at 637.096 kb on - strand, within MPMX19_03289at 637.096 kb on - strand, within MPMX19_03289at 637.096 kb on - strand, within MPMX19_03289

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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634,311 + MPMX19_03287 0.49 -2.1
634,311 + MPMX19_03287 0.49 +0.3
634,311 + MPMX19_03287 0.49 -1.0
634,312 - MPMX19_03287 0.49 -2.7
634,312 - MPMX19_03287 0.49 -2.0
634,515 + MPMX19_03287 0.63 +0.9
634,515 + MPMX19_03287 0.63 +0.2
634,515 + MPMX19_03287 0.63 +0.4
634,515 + MPMX19_03287 0.63 -0.6
634,515 + MPMX19_03287 0.63 -0.0
634,515 + MPMX19_03287 0.63 -0.1
634,516 - MPMX19_03287 0.63 +0.1
634,516 - MPMX19_03287 0.63 -1.2
634,527 + MPMX19_03287 0.64 -0.0
634,527 + MPMX19_03287 0.64 -1.0
634,674 + MPMX19_03287 0.74 -1.4
634,675 - MPMX19_03287 0.74 +0.3
634,737 + MPMX19_03287 0.79 -0.9
634,738 - MPMX19_03287 0.79 -0.1
634,738 - MPMX19_03287 0.79 +0.5
635,053 + -0.5
635,053 + +0.2
635,053 + -2.1
635,053 + -1.3
635,054 - -1.7
635,105 + +0.3
635,105 + -0.4
635,105 + -0.2
635,105 + -1.0
635,105 + -1.0
635,105 + +0.7
635,105 + +0.4
635,105 + +1.6
635,105 + -0.2
635,105 + -1.0
635,106 - -1.8
635,106 - -0.3
635,106 - -0.6
635,106 - -0.6
635,321 + MPMX19_03288 0.24 +0.2
635,321 + MPMX19_03288 0.24 +0.2
635,321 + MPMX19_03288 0.24 -0.5
635,321 + MPMX19_03288 0.24 -1.3
635,321 + MPMX19_03288 0.24 -0.7
635,321 + MPMX19_03288 0.24 -1.2
635,321 + MPMX19_03288 0.24 +0.2
635,321 + MPMX19_03288 0.24 -1.4
635,322 - MPMX19_03288 0.24 -1.6
635,322 - MPMX19_03288 0.24 -0.3
635,322 - MPMX19_03288 0.24 -0.4
635,322 - MPMX19_03288 0.24 +0.7
635,322 - MPMX19_03288 0.24 -0.0
635,322 - MPMX19_03288 0.24 +0.8
635,636 + MPMX19_03288 0.52 +1.0
635,636 + MPMX19_03288 0.52 -0.5
635,636 + MPMX19_03288 0.52 +0.3
635,636 + MPMX19_03288 0.52 +0.4
635,636 + MPMX19_03288 0.52 -0.8
635,636 + MPMX19_03288 0.52 -0.0
635,636 + MPMX19_03288 0.52 +0.9
635,636 + MPMX19_03288 0.52 -0.6
635,636 + MPMX19_03288 0.52 -1.0
635,636 + MPMX19_03288 0.52 -0.0
635,636 + MPMX19_03288 0.52 +0.6
635,636 + MPMX19_03288 0.52 -1.0
635,636 + MPMX19_03288 0.52 -0.2
635,637 - MPMX19_03288 0.52 -0.6
635,637 - MPMX19_03288 0.52 -2.7
635,637 - MPMX19_03288 0.52 -3.0
635,637 - MPMX19_03288 0.52 -0.3
635,637 - MPMX19_03288 0.52 +0.5
635,637 - MPMX19_03288 0.52 -2.1
635,637 - MPMX19_03288 0.52 -0.2
635,637 - MPMX19_03288 0.52 +0.4
635,637 - MPMX19_03288 0.52 -0.0
635,637 - MPMX19_03288 0.52 +0.7
635,637 - MPMX19_03288 0.52 -0.5
635,637 - MPMX19_03288 0.52 -0.7
635,637 - MPMX19_03288 0.52 -0.5
635,637 - MPMX19_03288 0.52 +0.3
635,637 - MPMX19_03288 0.52 +0.1
635,637 - MPMX19_03288 0.52 +0.1
635,637 - MPMX19_03288 0.52 -2.3
635,735 + MPMX19_03288 0.61 +0.4
635,736 - MPMX19_03288 0.61 -0.9
635,736 - MPMX19_03288 0.61 -0.2
635,736 - MPMX19_03288 0.61 -0.7
635,736 - MPMX19_03288 0.61 -0.4
636,008 + MPMX19_03288 0.85 -1.7
636,008 + MPMX19_03288 0.85 +0.2
636,008 + MPMX19_03288 0.85 +0.6
636,008 + MPMX19_03288 0.85 +0.7
636,008 + MPMX19_03288 0.85 +0.2
636,009 - MPMX19_03288 0.85 -0.2
636,009 - MPMX19_03288 0.85 +0.2
636,009 - MPMX19_03288 0.85 -0.4
636,009 - MPMX19_03288 0.85 +0.7
636,009 - MPMX19_03288 0.85 -0.5
636,009 - MPMX19_03288 0.85 -1.7
636,117 - -0.0
636,213 + +0.3
636,214 - -0.6
636,214 - -0.2
636,242 + +0.8
636,242 + -1.4
636,242 + -0.8
636,242 + +0.4
636,242 + +0.1
636,242 + -1.1
636,242 + +0.6
636,242 + -0.5
636,242 + +0.1
636,242 + -1.6
636,242 + +1.0
636,242 + -0.2
636,242 + -0.8
636,243 - -0.7
636,243 - +0.5
636,243 - -1.9
636,243 - -1.2
636,243 - -0.4
636,243 - -0.5
636,243 - -0.7
636,243 - -1.0
636,243 - -2.0
636,381 + +0.4
636,543 + MPMX19_03289 0.23 +0.4
636,543 + MPMX19_03289 0.23 +0.2
636,543 + MPMX19_03289 0.23 -0.1
636,543 + MPMX19_03289 0.23 -2.0
636,543 + MPMX19_03289 0.23 -1.7
636,544 - MPMX19_03289 0.24 -0.9
636,544 - MPMX19_03289 0.24 -2.0
636,544 - MPMX19_03289 0.24 -0.0
636,544 - MPMX19_03289 0.24 -2.7
636,586 + MPMX19_03289 0.28 -0.4
636,587 - MPMX19_03289 0.28 -0.4
636,633 + MPMX19_03289 0.32 -1.9
636,633 + MPMX19_03289 0.32 -1.4
636,633 + MPMX19_03289 0.32 +1.8
636,633 + MPMX19_03289 0.32 +0.8
636,633 + MPMX19_03289 0.32 -1.8
636,633 + MPMX19_03289 0.32 +0.6
636,634 - MPMX19_03289 0.32 -2.0
636,634 - MPMX19_03289 0.32 -2.7
636,634 - MPMX19_03289 0.32 -0.2
636,634 - MPMX19_03289 0.32 +0.3
636,816 + MPMX19_03289 0.50 -0.9
636,816 + MPMX19_03289 0.50 -0.0
636,816 + MPMX19_03289 0.50 -1.1
636,816 + MPMX19_03289 0.50 +1.2
636,816 + MPMX19_03289 0.50 -0.4
636,817 - MPMX19_03289 0.50 +0.2
636,817 - MPMX19_03289 0.50 -0.3
636,909 + MPMX19_03289 0.59 +0.2
636,909 + MPMX19_03289 0.59 -1.3
636,909 + MPMX19_03289 0.59 +0.6
636,910 - MPMX19_03289 0.59 -1.7
636,910 - MPMX19_03289 0.59 -1.2
636,910 - MPMX19_03289 0.59 +0.9
636,910 - MPMX19_03289 0.59 +0.6
636,910 - MPMX19_03289 0.59 +0.6
636,910 - MPMX19_03289 0.59 +0.2
637,092 + MPMX19_03289 0.77 +1.1
637,092 + MPMX19_03289 0.77 -0.4
637,093 - MPMX19_03289 0.77 -1.1
637,093 - MPMX19_03289 0.77 -1.5
637,095 + MPMX19_03289 0.77 -2.3
637,095 + MPMX19_03289 0.77 -0.7
637,095 + MPMX19_03289 0.77 -0.8
637,095 + MPMX19_03289 0.77 +0.4
637,095 + MPMX19_03289 0.77 -0.7
637,095 + MPMX19_03289 0.77 -0.2
637,095 + MPMX19_03289 0.77 -0.6
637,095 + MPMX19_03289 0.77 -0.9
637,096 - MPMX19_03289 0.77 +0.6
637,096 - MPMX19_03289 0.77 +0.2
637,096 - MPMX19_03289 0.77 -1.1

Or see this region's nucleotide sequence