Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03282

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03280 and MPMX19_03281 overlap by 4 nucleotidesMPMX19_03281 and MPMX19_03282 are separated by 39 nucleotidesMPMX19_03282 and MPMX19_03283 are separated by 101 nucleotides MPMX19_03280: MPMX19_03280 - Inner membrane ABC transporter permease protein YdcV, at 626,260 to 627,075 _03280 MPMX19_03281: MPMX19_03281 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 627,072 to 627,818 _03281 MPMX19_03282: MPMX19_03282 - HTH-type transcriptional regulator McbR, at 627,858 to 628,541 _03282 MPMX19_03283: MPMX19_03283 - Glutamate-1-semialdehyde 2,1-aminomutase, at 628,643 to 629,956 _03283 Position (kb) 627 628 629Strain fitness (log2 ratio) -2 -1 0 1 2at 627.501 kb on + strand, within MPMX19_03281at 627.501 kb on + strand, within MPMX19_03281at 627.501 kb on + strand, within MPMX19_03281at 627.502 kb on - strand, within MPMX19_03281at 627.502 kb on - strand, within MPMX19_03281at 627.738 kb on + strand, within MPMX19_03281at 627.738 kb on + strand, within MPMX19_03281at 627.739 kb on - strand, within MPMX19_03281at 627.739 kb on - strand, within MPMX19_03281at 627.739 kb on - strand, within MPMX19_03281at 627.791 kb on + strandat 627.792 kb on - strandat 628.012 kb on + strand, within MPMX19_03282at 628.012 kb on + strand, within MPMX19_03282at 628.012 kb on + strand, within MPMX19_03282at 628.012 kb on + strand, within MPMX19_03282at 628.012 kb on + strand, within MPMX19_03282at 628.013 kb on - strand, within MPMX19_03282at 628.036 kb on + strand, within MPMX19_03282at 628.036 kb on + strand, within MPMX19_03282at 628.036 kb on + strand, within MPMX19_03282at 628.037 kb on - strand, within MPMX19_03282at 628.037 kb on - strand, within MPMX19_03282at 628.037 kb on - strand, within MPMX19_03282at 628.149 kb on + strand, within MPMX19_03282at 628.149 kb on + strand, within MPMX19_03282at 628.149 kb on + strand, within MPMX19_03282at 628.149 kb on + strand, within MPMX19_03282at 628.150 kb on - strand, within MPMX19_03282at 628.150 kb on - strand, within MPMX19_03282at 628.150 kb on - strand, within MPMX19_03282at 628.150 kb on - strand, within MPMX19_03282at 628.150 kb on - strand, within MPMX19_03282at 628.300 kb on + strand, within MPMX19_03282at 628.300 kb on + strand, within MPMX19_03282at 628.495 kb on + strandat 628.495 kb on + strandat 628.495 kb on + strandat 628.495 kb on + strandat 628.495 kb on + strandat 628.495 kb on + strandat 628.495 kb on + strandat 628.495 kb on + strandat 628.495 kb on + strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.622 kb on + strandat 628.622 kb on + strandat 628.622 kb on + strandat 628.623 kb on - strandat 628.623 kb on - strandat 628.624 kb on + strandat 628.624 kb on + strandat 628.624 kb on + strandat 628.629 kb on + strandat 628.629 kb on + strandat 628.629 kb on + strandat 628.629 kb on + strandat 628.629 kb on + strandat 628.630 kb on - strandat 628.630 kb on - strandat 628.743 kb on + strandat 628.743 kb on + strandat 628.743 kb on + strandat 628.743 kb on + strandat 628.743 kb on + strandat 628.744 kb on - strandat 628.744 kb on - strandat 628.846 kb on - strand, within MPMX19_03283at 628.846 kb on - strand, within MPMX19_03283at 628.872 kb on + strand, within MPMX19_03283at 628.872 kb on + strand, within MPMX19_03283at 628.872 kb on + strand, within MPMX19_03283at 628.872 kb on + strand, within MPMX19_03283at 628.872 kb on + strand, within MPMX19_03283at 628.872 kb on + strand, within MPMX19_03283at 628.873 kb on - strand, within MPMX19_03283at 628.873 kb on - strand, within MPMX19_03283at 628.873 kb on - strand, within MPMX19_03283at 628.893 kb on + strand, within MPMX19_03283at 628.894 kb on - strand, within MPMX19_03283at 628.983 kb on + strand, within MPMX19_03283at 628.983 kb on + strand, within MPMX19_03283at 628.983 kb on + strand, within MPMX19_03283at 628.983 kb on + strand, within MPMX19_03283at 628.983 kb on + strand, within MPMX19_03283at 628.984 kb on - strand, within MPMX19_03283at 628.984 kb on - strand, within MPMX19_03283at 628.984 kb on - strand, within MPMX19_03283at 628.984 kb on - strand, within MPMX19_03283at 628.984 kb on - strand, within MPMX19_03283at 629.202 kb on + strand, within MPMX19_03283at 629.382 kb on + strand, within MPMX19_03283at 629.382 kb on + strand, within MPMX19_03283at 629.383 kb on - strand, within MPMX19_03283at 629.409 kb on + strand, within MPMX19_03283at 629.409 kb on + strand, within MPMX19_03283at 629.409 kb on + strand, within MPMX19_03283at 629.409 kb on + strand, within MPMX19_03283at 629.409 kb on + strand, within MPMX19_03283at 629.409 kb on + strand, within MPMX19_03283at 629.410 kb on - strand, within MPMX19_03283at 629.410 kb on - strand, within MPMX19_03283at 629.410 kb on - strand, within MPMX19_03283at 629.425 kb on + strand, within MPMX19_03283at 629.425 kb on + strand, within MPMX19_03283at 629.425 kb on + strand, within MPMX19_03283at 629.425 kb on + strand, within MPMX19_03283at 629.425 kb on + strand, within MPMX19_03283at 629.425 kb on + strand, within MPMX19_03283at 629.426 kb on - strand, within MPMX19_03283at 629.426 kb on - strand, within MPMX19_03283at 629.426 kb on - strand, within MPMX19_03283at 629.426 kb on - strand, within MPMX19_03283at 629.426 kb on - strand, within MPMX19_03283at 629.426 kb on - strand, within MPMX19_03283at 629.514 kb on + strand, within MPMX19_03283at 629.514 kb on + strand, within MPMX19_03283at 629.514 kb on + strand, within MPMX19_03283at 629.515 kb on - strand, within MPMX19_03283at 629.515 kb on - strand, within MPMX19_03283at 629.533 kb on - strand, within MPMX19_03283

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
627,501 + MPMX19_03281 0.57 +0.6
627,501 + MPMX19_03281 0.57 +0.4
627,501 + MPMX19_03281 0.57 -0.7
627,502 - MPMX19_03281 0.58 -1.9
627,502 - MPMX19_03281 0.58 -0.6
627,738 + MPMX19_03281 0.89 +0.4
627,738 + MPMX19_03281 0.89 -1.5
627,739 - MPMX19_03281 0.89 +0.6
627,739 - MPMX19_03281 0.89 +0.6
627,739 - MPMX19_03281 0.89 -1.0
627,791 + -1.9
627,792 - +0.1
628,012 + MPMX19_03282 0.23 +1.6
628,012 + MPMX19_03282 0.23 -1.2
628,012 + MPMX19_03282 0.23 -1.0
628,012 + MPMX19_03282 0.23 -0.4
628,012 + MPMX19_03282 0.23 -0.6
628,013 - MPMX19_03282 0.23 -0.5
628,036 + MPMX19_03282 0.26 -0.9
628,036 + MPMX19_03282 0.26 -0.2
628,036 + MPMX19_03282 0.26 -0.9
628,037 - MPMX19_03282 0.26 +1.3
628,037 - MPMX19_03282 0.26 -0.9
628,037 - MPMX19_03282 0.26 -0.6
628,149 + MPMX19_03282 0.43 +0.3
628,149 + MPMX19_03282 0.43 -1.1
628,149 + MPMX19_03282 0.43 +2.0
628,149 + MPMX19_03282 0.43 -0.0
628,150 - MPMX19_03282 0.43 +2.2
628,150 - MPMX19_03282 0.43 -1.0
628,150 - MPMX19_03282 0.43 -0.5
628,150 - MPMX19_03282 0.43 -1.0
628,150 - MPMX19_03282 0.43 -1.4
628,300 + MPMX19_03282 0.65 -0.7
628,300 + MPMX19_03282 0.65 -0.2
628,495 + -0.6
628,495 + -0.9
628,495 + -0.3
628,495 + -2.2
628,495 + -1.7
628,495 + +0.3
628,495 + +0.8
628,495 + -0.4
628,495 + -1.7
628,496 - -1.2
628,496 - -0.7
628,496 - -0.2
628,496 - +1.2
628,496 - -0.6
628,496 - -0.0
628,496 - -1.4
628,496 - -0.2
628,496 - +0.1
628,496 - -1.0
628,622 + -1.0
628,622 + +1.4
628,622 + -1.2
628,623 - -1.0
628,623 - -0.5
628,624 + -0.7
628,624 + -0.3
628,624 + +0.8
628,629 + +0.4
628,629 + -1.1
628,629 + +2.1
628,629 + -0.4
628,629 + -1.7
628,630 - -1.2
628,630 - -0.8
628,743 + +0.2
628,743 + -0.2
628,743 + -0.6
628,743 + -0.8
628,743 + -0.4
628,744 - -1.2
628,744 - -0.6
628,846 - MPMX19_03283 0.15 -0.5
628,846 - MPMX19_03283 0.15 -0.1
628,872 + MPMX19_03283 0.17 -1.8
628,872 + MPMX19_03283 0.17 +0.5
628,872 + MPMX19_03283 0.17 +0.8
628,872 + MPMX19_03283 0.17 -0.6
628,872 + MPMX19_03283 0.17 +0.7
628,872 + MPMX19_03283 0.17 -0.3
628,873 - MPMX19_03283 0.18 +0.3
628,873 - MPMX19_03283 0.18 -0.2
628,873 - MPMX19_03283 0.18 -0.0
628,893 + MPMX19_03283 0.19 +1.6
628,894 - MPMX19_03283 0.19 +0.3
628,983 + MPMX19_03283 0.26 +0.5
628,983 + MPMX19_03283 0.26 +1.2
628,983 + MPMX19_03283 0.26 +1.4
628,983 + MPMX19_03283 0.26 +0.5
628,983 + MPMX19_03283 0.26 +1.4
628,984 - MPMX19_03283 0.26 -2.1
628,984 - MPMX19_03283 0.26 +0.8
628,984 - MPMX19_03283 0.26 -0.8
628,984 - MPMX19_03283 0.26 +1.4
628,984 - MPMX19_03283 0.26 -1.1
629,202 + MPMX19_03283 0.43 +0.1
629,382 + MPMX19_03283 0.56 -1.5
629,382 + MPMX19_03283 0.56 +0.4
629,383 - MPMX19_03283 0.56 +1.4
629,409 + MPMX19_03283 0.58 -0.4
629,409 + MPMX19_03283 0.58 +0.6
629,409 + MPMX19_03283 0.58 +0.8
629,409 + MPMX19_03283 0.58 -0.6
629,409 + MPMX19_03283 0.58 -0.1
629,409 + MPMX19_03283 0.58 +0.0
629,410 - MPMX19_03283 0.58 -0.4
629,410 - MPMX19_03283 0.58 +0.5
629,410 - MPMX19_03283 0.58 +0.1
629,425 + MPMX19_03283 0.60 -0.2
629,425 + MPMX19_03283 0.60 -0.0
629,425 + MPMX19_03283 0.60 -1.4
629,425 + MPMX19_03283 0.60 -0.6
629,425 + MPMX19_03283 0.60 -1.1
629,425 + MPMX19_03283 0.60 -0.1
629,426 - MPMX19_03283 0.60 -0.7
629,426 - MPMX19_03283 0.60 -0.1
629,426 - MPMX19_03283 0.60 -1.4
629,426 - MPMX19_03283 0.60 +0.3
629,426 - MPMX19_03283 0.60 -0.7
629,426 - MPMX19_03283 0.60 +1.2
629,514 + MPMX19_03283 0.66 -0.2
629,514 + MPMX19_03283 0.66 -0.1
629,514 + MPMX19_03283 0.66 -0.2
629,515 - MPMX19_03283 0.66 +0.8
629,515 - MPMX19_03283 0.66 -1.4
629,533 - MPMX19_03283 0.68 +0.2

Or see this region's nucleotide sequence