Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03247

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03246 and MPMX19_03247 are separated by 382 nucleotidesMPMX19_03247 and MPMX19_03248 are separated by 88 nucleotides MPMX19_03246: MPMX19_03246 - Ferrichrome outer membrane transporter/phage receptor, at 585,006 to 587,312 _03246 MPMX19_03247: MPMX19_03247 - putative RNA polymerase sigma factor FecI, at 587,695 to 588,228 _03247 MPMX19_03248: MPMX19_03248 - 3-ketosteroid-9-alpha-monooxygenase, ferredoxin reductase component, at 588,317 to 589,402 _03248 Position (kb) 587 588 589Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 586.696 kb on + strand, within MPMX19_03246at 586.696 kb on + strand, within MPMX19_03246at 586.697 kb on - strand, within MPMX19_03246at 586.697 kb on - strand, within MPMX19_03246at 586.697 kb on - strand, within MPMX19_03246at 586.697 kb on - strand, within MPMX19_03246at 586.697 kb on - strand, within MPMX19_03246at 586.697 kb on - strand, within MPMX19_03246at 586.697 kb on - strand, within MPMX19_03246at 586.753 kb on + strand, within MPMX19_03246at 586.753 kb on + strand, within MPMX19_03246at 586.754 kb on - strand, within MPMX19_03246at 586.774 kb on + strand, within MPMX19_03246at 586.774 kb on + strand, within MPMX19_03246at 586.774 kb on + strand, within MPMX19_03246at 586.865 kb on - strand, within MPMX19_03246at 586.865 kb on - strand, within MPMX19_03246at 586.891 kb on + strand, within MPMX19_03246at 586.891 kb on + strand, within MPMX19_03246at 586.892 kb on - strand, within MPMX19_03246at 586.892 kb on - strand, within MPMX19_03246at 587.233 kb on + strandat 587.234 kb on - strandat 587.334 kb on + strandat 587.334 kb on + strandat 587.334 kb on + strandat 587.334 kb on + strandat 587.334 kb on + strandat 587.335 kb on - strandat 587.492 kb on + strandat 587.772 kb on - strand, within MPMX19_03247at 587.881 kb on + strand, within MPMX19_03247at 587.881 kb on + strand, within MPMX19_03247at 587.881 kb on + strand, within MPMX19_03247at 587.882 kb on - strand, within MPMX19_03247at 587.882 kb on - strand, within MPMX19_03247at 587.882 kb on - strand, within MPMX19_03247at 587.882 kb on - strand, within MPMX19_03247at 587.901 kb on + strand, within MPMX19_03247at 587.921 kb on - strand, within MPMX19_03247at 587.921 kb on - strand, within MPMX19_03247at 587.978 kb on + strand, within MPMX19_03247at 588.011 kb on + strand, within MPMX19_03247at 588.012 kb on - strand, within MPMX19_03247at 588.012 kb on - strand, within MPMX19_03247at 588.012 kb on - strand, within MPMX19_03247at 588.079 kb on + strand, within MPMX19_03247at 588.079 kb on + strand, within MPMX19_03247at 588.080 kb on - strand, within MPMX19_03247at 588.080 kb on - strand, within MPMX19_03247at 588.296 kb on + strandat 588.297 kb on - strandat 588.297 kb on - strandat 588.297 kb on - strandat 588.302 kb on + strandat 588.302 kb on + strandat 588.302 kb on + strandat 588.302 kb on + strandat 588.303 kb on - strandat 588.303 kb on - strandat 588.303 kb on - strandat 588.303 kb on - strandat 588.303 kb on - strandat 588.303 kb on - strandat 588.303 kb on - strandat 588.369 kb on + strandat 588.369 kb on + strandat 588.369 kb on + strandat 588.369 kb on + strandat 588.369 kb on + strandat 588.369 kb on + strandat 588.370 kb on - strandat 588.370 kb on - strandat 588.370 kb on - strandat 588.370 kb on - strandat 588.370 kb on - strandat 588.370 kb on - strandat 588.370 kb on - strandat 588.660 kb on + strand, within MPMX19_03248at 588.660 kb on + strand, within MPMX19_03248at 588.661 kb on - strand, within MPMX19_03248at 588.735 kb on + strand, within MPMX19_03248at 588.735 kb on + strand, within MPMX19_03248at 588.735 kb on + strand, within MPMX19_03248at 588.736 kb on - strand, within MPMX19_03248at 588.736 kb on - strand, within MPMX19_03248at 588.753 kb on + strand, within MPMX19_03248at 588.753 kb on + strand, within MPMX19_03248at 588.753 kb on + strand, within MPMX19_03248at 588.754 kb on - strand, within MPMX19_03248at 588.754 kb on - strand, within MPMX19_03248at 588.754 kb on - strand, within MPMX19_03248at 588.754 kb on - strand, within MPMX19_03248at 588.754 kb on - strand, within MPMX19_03248at 588.754 kb on - strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.970 kb on - strand, within MPMX19_03248at 588.970 kb on - strand, within MPMX19_03248at 588.970 kb on - strand, within MPMX19_03248at 588.970 kb on - strand, within MPMX19_03248at 588.970 kb on - strand, within MPMX19_03248at 588.970 kb on - strand, within MPMX19_03248at 588.970 kb on - strand, within MPMX19_03248at 588.970 kb on - strand, within MPMX19_03248at 588.970 kb on - strand, within MPMX19_03248at 588.970 kb on - strand, within MPMX19_03248at 588.970 kb on - strand, within MPMX19_03248at 588.970 kb on - strand, within MPMX19_03248at 589.023 kb on + strand, within MPMX19_03248at 589.023 kb on + strand, within MPMX19_03248at 589.023 kb on + strand, within MPMX19_03248at 589.023 kb on + strand, within MPMX19_03248at 589.023 kb on + strand, within MPMX19_03248at 589.023 kb on + strand, within MPMX19_03248at 589.023 kb on + strand, within MPMX19_03248at 589.023 kb on + strand, within MPMX19_03248at 589.023 kb on + strand, within MPMX19_03248at 589.023 kb on + strand, within MPMX19_03248at 589.023 kb on + strand, within MPMX19_03248at 589.023 kb on + strand, within MPMX19_03248at 589.024 kb on - strand, within MPMX19_03248at 589.024 kb on - strand, within MPMX19_03248at 589.024 kb on - strand, within MPMX19_03248at 589.024 kb on - strand, within MPMX19_03248at 589.024 kb on - strand, within MPMX19_03248at 589.024 kb on - strand, within MPMX19_03248at 589.024 kb on - strand, within MPMX19_03248at 589.024 kb on - strand, within MPMX19_03248at 589.024 kb on - strand, within MPMX19_03248at 589.024 kb on - strand, within MPMX19_03248at 589.024 kb on - strand, within MPMX19_03248at 589.024 kb on - strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.195 kb on - strand, within MPMX19_03248at 589.195 kb on - strand, within MPMX19_03248at 589.195 kb on - strand, within MPMX19_03248at 589.195 kb on - strand, within MPMX19_03248at 589.195 kb on - strand, within MPMX19_03248

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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586,696 + MPMX19_03246 0.73 +0.4
586,696 + MPMX19_03246 0.73 +0.6
586,697 - MPMX19_03246 0.73 -0.2
586,697 - MPMX19_03246 0.73 -1.3
586,697 - MPMX19_03246 0.73 -0.1
586,697 - MPMX19_03246 0.73 -1.3
586,697 - MPMX19_03246 0.73 +1.6
586,697 - MPMX19_03246 0.73 +0.6
586,697 - MPMX19_03246 0.73 -0.6
586,753 + MPMX19_03246 0.76 -1.7
586,753 + MPMX19_03246 0.76 +0.3
586,754 - MPMX19_03246 0.76 -0.3
586,774 + MPMX19_03246 0.77 -2.0
586,774 + MPMX19_03246 0.77 +0.2
586,774 + MPMX19_03246 0.77 -1.0
586,865 - MPMX19_03246 0.81 -0.2
586,865 - MPMX19_03246 0.81 +1.3
586,891 + MPMX19_03246 0.82 -0.9
586,891 + MPMX19_03246 0.82 +0.2
586,892 - MPMX19_03246 0.82 +0.7
586,892 - MPMX19_03246 0.82 -1.6
587,233 + -0.2
587,234 - +0.8
587,334 + -1.5
587,334 + +0.8
587,334 + +0.4
587,334 + -1.4
587,334 + -1.4
587,335 - -1.4
587,492 + +1.8
587,772 - MPMX19_03247 0.14 -0.2
587,881 + MPMX19_03247 0.35 -0.3
587,881 + MPMX19_03247 0.35 +0.5
587,881 + MPMX19_03247 0.35 +0.3
587,882 - MPMX19_03247 0.35 -1.6
587,882 - MPMX19_03247 0.35 -0.2
587,882 - MPMX19_03247 0.35 -1.2
587,882 - MPMX19_03247 0.35 -0.7
587,901 + MPMX19_03247 0.39 -0.2
587,921 - MPMX19_03247 0.42 +1.0
587,921 - MPMX19_03247 0.42 -0.9
587,978 + MPMX19_03247 0.53 -3.5
588,011 + MPMX19_03247 0.59 +0.6
588,012 - MPMX19_03247 0.59 -0.9
588,012 - MPMX19_03247 0.59 -1.4
588,012 - MPMX19_03247 0.59 -2.1
588,079 + MPMX19_03247 0.72 -2.3
588,079 + MPMX19_03247 0.72 -0.7
588,080 - MPMX19_03247 0.72 +0.1
588,080 - MPMX19_03247 0.72 -0.1
588,296 + -0.0
588,297 - -0.0
588,297 - -0.0
588,297 - -0.2
588,302 + -0.0
588,302 + +0.6
588,302 + +0.8
588,302 + -0.9
588,303 - +0.4
588,303 - +0.7
588,303 - -0.7
588,303 - +0.2
588,303 - +0.9
588,303 - -1.1
588,303 - -1.4
588,369 + -0.7
588,369 + -0.0
588,369 + +0.0
588,369 + -1.2
588,369 + +1.9
588,369 + -0.3
588,370 - -0.7
588,370 - -0.0
588,370 - +0.7
588,370 - -1.0
588,370 - -2.3
588,370 - +1.3
588,370 - +0.8
588,660 + MPMX19_03248 0.32 -0.8
588,660 + MPMX19_03248 0.32 -1.3
588,661 - MPMX19_03248 0.32 -0.2
588,735 + MPMX19_03248 0.38 -0.2
588,735 + MPMX19_03248 0.38 -2.9
588,735 + MPMX19_03248 0.38 -0.7
588,736 - MPMX19_03248 0.39 -0.1
588,736 - MPMX19_03248 0.39 +0.4
588,753 + MPMX19_03248 0.40 -1.0
588,753 + MPMX19_03248 0.40 -1.5
588,753 + MPMX19_03248 0.40 +0.2
588,754 - MPMX19_03248 0.40 -0.7
588,754 - MPMX19_03248 0.40 +0.6
588,754 - MPMX19_03248 0.40 -0.4
588,754 - MPMX19_03248 0.40 -0.0
588,754 - MPMX19_03248 0.40 -0.7
588,754 - MPMX19_03248 0.40 -0.5
588,969 + MPMX19_03248 0.60 +1.1
588,969 + MPMX19_03248 0.60 +0.1
588,969 + MPMX19_03248 0.60 -1.9
588,969 + MPMX19_03248 0.60 -0.3
588,969 + MPMX19_03248 0.60 +0.1
588,969 + MPMX19_03248 0.60 -0.7
588,969 + MPMX19_03248 0.60 -1.7
588,969 + MPMX19_03248 0.60 -0.9
588,969 + MPMX19_03248 0.60 +1.1
588,969 + MPMX19_03248 0.60 -0.5
588,969 + MPMX19_03248 0.60 +0.1
588,969 + MPMX19_03248 0.60 -1.6
588,969 + MPMX19_03248 0.60 -0.9
588,970 - MPMX19_03248 0.60 -1.6
588,970 - MPMX19_03248 0.60 +0.2
588,970 - MPMX19_03248 0.60 +0.1
588,970 - MPMX19_03248 0.60 -0.9
588,970 - MPMX19_03248 0.60 +0.2
588,970 - MPMX19_03248 0.60 -1.0
588,970 - MPMX19_03248 0.60 -0.2
588,970 - MPMX19_03248 0.60 -0.0
588,970 - MPMX19_03248 0.60 -1.4
588,970 - MPMX19_03248 0.60 +0.1
588,970 - MPMX19_03248 0.60 +0.1
588,970 - MPMX19_03248 0.60 -0.2
589,023 + MPMX19_03248 0.65 -0.6
589,023 + MPMX19_03248 0.65 -0.7
589,023 + MPMX19_03248 0.65 -0.4
589,023 + MPMX19_03248 0.65 -1.2
589,023 + MPMX19_03248 0.65 -0.4
589,023 + MPMX19_03248 0.65 +1.1
589,023 + MPMX19_03248 0.65 -0.9
589,023 + MPMX19_03248 0.65 -0.2
589,023 + MPMX19_03248 0.65 +0.6
589,023 + MPMX19_03248 0.65 -0.6
589,023 + MPMX19_03248 0.65 -0.9
589,023 + MPMX19_03248 0.65 -0.1
589,024 - MPMX19_03248 0.65 -0.9
589,024 - MPMX19_03248 0.65 -1.0
589,024 - MPMX19_03248 0.65 -0.9
589,024 - MPMX19_03248 0.65 -0.9
589,024 - MPMX19_03248 0.65 -1.5
589,024 - MPMX19_03248 0.65 -0.4
589,024 - MPMX19_03248 0.65 -1.1
589,024 - MPMX19_03248 0.65 -0.7
589,024 - MPMX19_03248 0.65 +0.6
589,024 - MPMX19_03248 0.65 +0.4
589,024 - MPMX19_03248 0.65 -0.1
589,024 - MPMX19_03248 0.65 +0.6
589,194 + MPMX19_03248 0.81 +2.2
589,194 + MPMX19_03248 0.81 -0.1
589,194 + MPMX19_03248 0.81 -0.2
589,194 + MPMX19_03248 0.81 +0.1
589,194 + MPMX19_03248 0.81 -1.7
589,194 + MPMX19_03248 0.81 -2.0
589,194 + MPMX19_03248 0.81 -0.7
589,194 + MPMX19_03248 0.81 -0.4
589,194 + MPMX19_03248 0.81 -0.6
589,194 + MPMX19_03248 0.81 -0.2
589,194 + MPMX19_03248 0.81 +0.8
589,194 + MPMX19_03248 0.81 -0.0
589,194 + MPMX19_03248 0.81 -0.7
589,194 + MPMX19_03248 0.81 -0.0
589,194 + MPMX19_03248 0.81 -2.4
589,195 - MPMX19_03248 0.81 +0.2
589,195 - MPMX19_03248 0.81 -1.0
589,195 - MPMX19_03248 0.81 -0.0
589,195 - MPMX19_03248 0.81 -0.5
589,195 - MPMX19_03248 0.81 -0.0

Or see this region's nucleotide sequence