Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03225

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03224 and MPMX19_03225 are separated by 42 nucleotidesMPMX19_03225 and MPMX19_03226 are separated by 441 nucleotidesMPMX19_03226 and MPMX19_03227 are separated by 197 nucleotides MPMX19_03224: MPMX19_03224 - Protein DipZ, at 524,459 to 526,234 _03224 MPMX19_03225: MPMX19_03225 - Organic hydroperoxide resistance transcriptional regulator, at 526,277 to 526,819 _03225 MPMX19_03226: MPMX19_03226 - hypothetical protein, at 527,261 to 527,554 _03226 MPMX19_03227: MPMX19_03227 - hypothetical protein, at 527,752 to 528,078 _03227 Position (kb) 526 527Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 525.365 kb on + strand, within MPMX19_03224at 525.365 kb on + strand, within MPMX19_03224at 525.365 kb on + strand, within MPMX19_03224at 525.365 kb on + strand, within MPMX19_03224at 525.365 kb on + strand, within MPMX19_03224at 525.366 kb on - strand, within MPMX19_03224at 525.366 kb on - strand, within MPMX19_03224at 525.366 kb on - strand, within MPMX19_03224at 525.366 kb on - strand, within MPMX19_03224at 525.366 kb on - strand, within MPMX19_03224at 525.398 kb on + strand, within MPMX19_03224at 525.399 kb on - strand, within MPMX19_03224at 525.399 kb on - strand, within MPMX19_03224at 525.399 kb on - strand, within MPMX19_03224at 525.527 kb on + strand, within MPMX19_03224at 525.527 kb on + strand, within MPMX19_03224at 525.527 kb on + strand, within MPMX19_03224at 525.528 kb on - strand, within MPMX19_03224at 525.528 kb on - strand, within MPMX19_03224at 525.528 kb on - strand, within MPMX19_03224at 525.528 kb on - strand, within MPMX19_03224at 525.528 kb on - strand, within MPMX19_03224at 525.528 kb on - strand, within MPMX19_03224at 525.581 kb on + strand, within MPMX19_03224at 525.581 kb on + strand, within MPMX19_03224at 525.581 kb on + strand, within MPMX19_03224at 525.581 kb on + strand, within MPMX19_03224at 525.581 kb on + strand, within MPMX19_03224at 525.581 kb on + strand, within MPMX19_03224at 525.581 kb on + strand, within MPMX19_03224at 525.581 kb on + strand, within MPMX19_03224at 525.582 kb on - strand, within MPMX19_03224at 525.582 kb on - strand, within MPMX19_03224at 525.582 kb on - strand, within MPMX19_03224at 525.582 kb on - strand, within MPMX19_03224at 525.582 kb on - strand, within MPMX19_03224at 525.582 kb on - strand, within MPMX19_03224at 525.582 kb on - strand, within MPMX19_03224at 525.596 kb on + strand, within MPMX19_03224at 525.596 kb on + strand, within MPMX19_03224at 525.596 kb on + strand, within MPMX19_03224at 525.596 kb on + strand, within MPMX19_03224at 525.596 kb on + strand, within MPMX19_03224at 525.596 kb on + strand, within MPMX19_03224at 525.596 kb on + strand, within MPMX19_03224at 525.596 kb on + strand, within MPMX19_03224at 525.596 kb on + strand, within MPMX19_03224at 525.596 kb on + strand, within MPMX19_03224at 525.596 kb on + strand, within MPMX19_03224at 525.596 kb on + strand, within MPMX19_03224at 525.596 kb on + strand, within MPMX19_03224at 525.597 kb on - strand, within MPMX19_03224at 525.597 kb on - strand, within MPMX19_03224at 525.597 kb on - strand, within MPMX19_03224at 525.597 kb on - strand, within MPMX19_03224at 525.597 kb on - strand, within MPMX19_03224at 525.597 kb on - strand, within MPMX19_03224at 525.597 kb on - strand, within MPMX19_03224at 525.597 kb on - strand, within MPMX19_03224at 525.597 kb on - strand, within MPMX19_03224at 525.597 kb on - strand, within MPMX19_03224at 525.597 kb on - strand, within MPMX19_03224at 525.597 kb on - strand, within MPMX19_03224at 525.597 kb on - strand, within MPMX19_03224at 525.597 kb on - strand, within MPMX19_03224at 525.597 kb on - strand, within MPMX19_03224at 525.597 kb on - strand, within MPMX19_03224at 525.597 kb on - strand, within MPMX19_03224at 525.597 kb on - strand, within MPMX19_03224at 525.597 kb on - strand, within MPMX19_03224at 525.597 kb on - strand, within MPMX19_03224at 525.597 kb on - strand, within MPMX19_03224at 525.597 kb on - strand, within MPMX19_03224at 525.597 kb on - strand, within MPMX19_03224at 525.597 kb on - strand, within MPMX19_03224at 525.598 kb on + strand, within MPMX19_03224at 525.599 kb on - strand, within MPMX19_03224at 525.651 kb on - strand, within MPMX19_03224at 525.806 kb on + strand, within MPMX19_03224at 525.806 kb on + strand, within MPMX19_03224at 525.806 kb on + strand, within MPMX19_03224at 525.806 kb on + strand, within MPMX19_03224at 525.806 kb on + strand, within MPMX19_03224at 525.806 kb on + strand, within MPMX19_03224at 525.806 kb on + strand, within MPMX19_03224at 525.807 kb on - strand, within MPMX19_03224at 525.807 kb on - strand, within MPMX19_03224at 525.807 kb on - strand, within MPMX19_03224at 525.807 kb on - strand, within MPMX19_03224at 525.807 kb on - strand, within MPMX19_03224at 525.807 kb on - strand, within MPMX19_03224at 525.807 kb on - strand, within MPMX19_03224at 525.816 kb on - strand, within MPMX19_03224at 525.875 kb on + strand, within MPMX19_03224at 525.875 kb on + strand, within MPMX19_03224at 525.875 kb on + strand, within MPMX19_03224at 525.875 kb on + strand, within MPMX19_03224at 525.876 kb on - strand, within MPMX19_03224at 525.876 kb on - strand, within MPMX19_03224at 525.876 kb on - strand, within MPMX19_03224at 525.876 kb on - strand, within MPMX19_03224at 525.876 kb on - strand, within MPMX19_03224at 525.876 kb on - strand, within MPMX19_03224at 525.978 kb on - strand, within MPMX19_03224at 525.978 kb on - strand, within MPMX19_03224at 526.136 kb on + strandat 526.136 kb on + strandat 526.136 kb on + strandat 526.136 kb on + strandat 526.137 kb on - strandat 526.137 kb on - strandat 526.137 kb on - strandat 526.137 kb on - strandat 526.214 kb on + strandat 526.215 kb on - strandat 526.215 kb on - strandat 526.215 kb on - strandat 526.215 kb on - strandat 526.215 kb on - strandat 526.278 kb on + strandat 526.278 kb on + strandat 526.278 kb on + strandat 526.279 kb on - strandat 526.279 kb on - strandat 526.279 kb on - strandat 526.279 kb on - strandat 526.476 kb on + strand, within MPMX19_03225at 526.476 kb on + strand, within MPMX19_03225at 526.476 kb on + strand, within MPMX19_03225at 526.476 kb on + strand, within MPMX19_03225at 526.477 kb on - strand, within MPMX19_03225at 526.477 kb on - strand, within MPMX19_03225at 526.477 kb on - strand, within MPMX19_03225at 526.477 kb on - strand, within MPMX19_03225at 526.577 kb on + strand, within MPMX19_03225at 526.577 kb on + strand, within MPMX19_03225at 526.596 kb on + strand, within MPMX19_03225at 526.596 kb on + strand, within MPMX19_03225at 526.596 kb on + strand, within MPMX19_03225at 526.596 kb on + strand, within MPMX19_03225at 526.596 kb on + strand, within MPMX19_03225at 526.596 kb on + strand, within MPMX19_03225at 526.596 kb on + strand, within MPMX19_03225at 526.596 kb on + strand, within MPMX19_03225at 526.596 kb on + strand, within MPMX19_03225at 526.596 kb on + strand, within MPMX19_03225at 526.597 kb on - strand, within MPMX19_03225at 526.597 kb on - strand, within MPMX19_03225at 526.597 kb on - strand, within MPMX19_03225at 526.597 kb on - strand, within MPMX19_03225at 526.597 kb on - strand, within MPMX19_03225at 526.597 kb on - strand, within MPMX19_03225at 526.597 kb on - strand, within MPMX19_03225at 526.597 kb on - strand, within MPMX19_03225at 526.605 kb on + strand, within MPMX19_03225at 526.605 kb on + strand, within MPMX19_03225at 526.605 kb on + strand, within MPMX19_03225at 526.605 kb on + strand, within MPMX19_03225at 526.605 kb on + strand, within MPMX19_03225at 526.605 kb on + strand, within MPMX19_03225at 526.605 kb on + strand, within MPMX19_03225at 526.606 kb on - strand, within MPMX19_03225at 526.606 kb on - strand, within MPMX19_03225at 526.606 kb on - strand, within MPMX19_03225at 526.606 kb on - strand, within MPMX19_03225at 526.636 kb on + strand, within MPMX19_03225at 526.636 kb on + strand, within MPMX19_03225at 526.636 kb on + strand, within MPMX19_03225at 526.636 kb on + strand, within MPMX19_03225at 526.636 kb on + strand, within MPMX19_03225at 526.636 kb on + strand, within MPMX19_03225at 526.636 kb on + strand, within MPMX19_03225at 526.636 kb on + strand, within MPMX19_03225at 526.637 kb on - strand, within MPMX19_03225at 526.637 kb on - strand, within MPMX19_03225at 526.637 kb on - strand, within MPMX19_03225at 526.637 kb on - strand, within MPMX19_03225at 526.638 kb on + strand, within MPMX19_03225at 526.638 kb on + strand, within MPMX19_03225at 526.638 kb on + strand, within MPMX19_03225at 526.638 kb on + strand, within MPMX19_03225at 526.638 kb on + strand, within MPMX19_03225at 526.638 kb on + strand, within MPMX19_03225at 526.639 kb on - strand, within MPMX19_03225at 526.639 kb on - strand, within MPMX19_03225at 526.639 kb on - strand, within MPMX19_03225at 526.639 kb on - strand, within MPMX19_03225at 526.639 kb on - strand, within MPMX19_03225at 526.639 kb on - strand, within MPMX19_03225at 526.639 kb on - strand, within MPMX19_03225at 526.639 kb on - strand, within MPMX19_03225at 526.639 kb on - strand, within MPMX19_03225at 526.650 kb on + strand, within MPMX19_03225at 526.668 kb on + strand, within MPMX19_03225at 526.668 kb on + strand, within MPMX19_03225at 526.668 kb on + strand, within MPMX19_03225at 526.669 kb on - strand, within MPMX19_03225at 526.669 kb on - strand, within MPMX19_03225at 526.739 kb on - strand, within MPMX19_03225at 526.739 kb on - strand, within MPMX19_03225at 526.878 kb on + strandat 526.878 kb on + strandat 526.878 kb on + strandat 527.220 kb on + strandat 527.220 kb on + strandat 527.220 kb on + strandat 527.221 kb on - strandat 527.221 kb on - strandat 527.221 kb on - strandat 527.262 kb on + strandat 527.263 kb on - strandat 527.263 kb on - strandat 527.270 kb on + strandat 527.271 kb on - strandat 527.271 kb on - strandat 527.271 kb on - strandat 527.282 kb on + strandat 527.282 kb on + strandat 527.294 kb on + strand, within MPMX19_03226at 527.320 kb on + strand, within MPMX19_03226at 527.320 kb on + strand, within MPMX19_03226at 527.320 kb on + strand, within MPMX19_03226at 527.321 kb on - strand, within MPMX19_03226at 527.321 kb on - strand, within MPMX19_03226at 527.321 kb on - strand, within MPMX19_03226at 527.381 kb on - strand, within MPMX19_03226at 527.668 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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525,365 + MPMX19_03224 0.51 -1.7
525,365 + MPMX19_03224 0.51 -0.2
525,365 + MPMX19_03224 0.51 -1.3
525,365 + MPMX19_03224 0.51 +0.5
525,365 + MPMX19_03224 0.51 -1.4
525,366 - MPMX19_03224 0.51 +0.8
525,366 - MPMX19_03224 0.51 -0.3
525,366 - MPMX19_03224 0.51 -0.0
525,366 - MPMX19_03224 0.51 +0.3
525,366 - MPMX19_03224 0.51 +0.5
525,398 + MPMX19_03224 0.53 -1.1
525,399 - MPMX19_03224 0.53 -0.1
525,399 - MPMX19_03224 0.53 -0.5
525,399 - MPMX19_03224 0.53 +0.3
525,527 + MPMX19_03224 0.60 -1.7
525,527 + MPMX19_03224 0.60 -0.5
525,527 + MPMX19_03224 0.60 -1.0
525,528 - MPMX19_03224 0.60 -1.0
525,528 - MPMX19_03224 0.60 -1.4
525,528 - MPMX19_03224 0.60 -0.7
525,528 - MPMX19_03224 0.60 -1.2
525,528 - MPMX19_03224 0.60 +0.3
525,528 - MPMX19_03224 0.60 +1.1
525,581 + MPMX19_03224 0.63 -0.5
525,581 + MPMX19_03224 0.63 -1.1
525,581 + MPMX19_03224 0.63 -1.5
525,581 + MPMX19_03224 0.63 -1.0
525,581 + MPMX19_03224 0.63 -0.1
525,581 + MPMX19_03224 0.63 -0.4
525,581 + MPMX19_03224 0.63 +0.2
525,581 + MPMX19_03224 0.63 -0.7
525,582 - MPMX19_03224 0.63 +1.1
525,582 - MPMX19_03224 0.63 -0.3
525,582 - MPMX19_03224 0.63 -0.2
525,582 - MPMX19_03224 0.63 -1.7
525,582 - MPMX19_03224 0.63 -0.0
525,582 - MPMX19_03224 0.63 +0.5
525,582 - MPMX19_03224 0.63 -0.6
525,596 + MPMX19_03224 0.64 -1.7
525,596 + MPMX19_03224 0.64 +0.4
525,596 + MPMX19_03224 0.64 +1.9
525,596 + MPMX19_03224 0.64 -1.4
525,596 + MPMX19_03224 0.64 -0.4
525,596 + MPMX19_03224 0.64 +0.6
525,596 + MPMX19_03224 0.64 -0.8
525,596 + MPMX19_03224 0.64 -1.1
525,596 + MPMX19_03224 0.64 -0.0
525,596 + MPMX19_03224 0.64 -0.9
525,596 + MPMX19_03224 0.64 -0.8
525,596 + MPMX19_03224 0.64 -1.5
525,596 + MPMX19_03224 0.64 +0.1
525,597 - MPMX19_03224 0.64 -1.2
525,597 - MPMX19_03224 0.64 -1.0
525,597 - MPMX19_03224 0.64 -0.9
525,597 - MPMX19_03224 0.64 -1.6
525,597 - MPMX19_03224 0.64 +0.3
525,597 - MPMX19_03224 0.64 -1.3
525,597 - MPMX19_03224 0.64 +0.2
525,597 - MPMX19_03224 0.64 -1.6
525,597 - MPMX19_03224 0.64 -0.8
525,597 - MPMX19_03224 0.64 +0.2
525,597 - MPMX19_03224 0.64 +0.6
525,597 - MPMX19_03224 0.64 -1.0
525,597 - MPMX19_03224 0.64 +0.1
525,597 - MPMX19_03224 0.64 -0.9
525,597 - MPMX19_03224 0.64 -0.1
525,597 - MPMX19_03224 0.64 +0.2
525,597 - MPMX19_03224 0.64 -0.9
525,597 - MPMX19_03224 0.64 -0.0
525,597 - MPMX19_03224 0.64 -0.0
525,597 - MPMX19_03224 0.64 +0.5
525,597 - MPMX19_03224 0.64 +0.5
525,597 - MPMX19_03224 0.64 -0.2
525,597 - MPMX19_03224 0.64 -0.4
525,597 - MPMX19_03224 0.64 -0.9
525,598 + MPMX19_03224 0.64 -0.9
525,599 - MPMX19_03224 0.64 -0.4
525,651 - MPMX19_03224 0.67 -1.2
525,806 + MPMX19_03224 0.76 +0.1
525,806 + MPMX19_03224 0.76 +0.4
525,806 + MPMX19_03224 0.76 -0.2
525,806 + MPMX19_03224 0.76 -0.9
525,806 + MPMX19_03224 0.76 -2.8
525,806 + MPMX19_03224 0.76 +0.8
525,806 + MPMX19_03224 0.76 +0.6
525,807 - MPMX19_03224 0.76 -1.3
525,807 - MPMX19_03224 0.76 -1.1
525,807 - MPMX19_03224 0.76 -2.3
525,807 - MPMX19_03224 0.76 -0.7
525,807 - MPMX19_03224 0.76 -0.0
525,807 - MPMX19_03224 0.76 -0.3
525,807 - MPMX19_03224 0.76 -0.3
525,816 - MPMX19_03224 0.76 -0.1
525,875 + MPMX19_03224 0.80 -0.4
525,875 + MPMX19_03224 0.80 -1.6
525,875 + MPMX19_03224 0.80 -0.4
525,875 + MPMX19_03224 0.80 -0.6
525,876 - MPMX19_03224 0.80 +1.1
525,876 - MPMX19_03224 0.80 -0.1
525,876 - MPMX19_03224 0.80 +0.1
525,876 - MPMX19_03224 0.80 -0.9
525,876 - MPMX19_03224 0.80 -1.7
525,876 - MPMX19_03224 0.80 -0.4
525,978 - MPMX19_03224 0.86 -0.3
525,978 - MPMX19_03224 0.86 -0.1
526,136 + -0.4
526,136 + +0.8
526,136 + -2.4
526,136 + +0.3
526,137 - +0.8
526,137 - -0.7
526,137 - -1.4
526,137 - +0.3
526,214 + +1.0
526,215 - -1.0
526,215 - -1.0
526,215 - +0.3
526,215 - +0.9
526,215 - +0.2
526,278 + +0.2
526,278 + -1.9
526,278 + -2.2
526,279 - -1.1
526,279 - -0.8
526,279 - +0.8
526,279 - +0.2
526,476 + MPMX19_03225 0.37 -1.3
526,476 + MPMX19_03225 0.37 -0.2
526,476 + MPMX19_03225 0.37 -1.9
526,476 + MPMX19_03225 0.37 -0.4
526,477 - MPMX19_03225 0.37 +0.6
526,477 - MPMX19_03225 0.37 -0.2
526,477 - MPMX19_03225 0.37 +0.2
526,477 - MPMX19_03225 0.37 +1.2
526,577 + MPMX19_03225 0.55 -0.4
526,577 + MPMX19_03225 0.55 -0.8
526,596 + MPMX19_03225 0.59 -1.2
526,596 + MPMX19_03225 0.59 -0.0
526,596 + MPMX19_03225 0.59 -0.0
526,596 + MPMX19_03225 0.59 -0.3
526,596 + MPMX19_03225 0.59 -2.0
526,596 + MPMX19_03225 0.59 -0.3
526,596 + MPMX19_03225 0.59 -1.2
526,596 + MPMX19_03225 0.59 -0.8
526,596 + MPMX19_03225 0.59 +0.2
526,596 + MPMX19_03225 0.59 -1.7
526,597 - MPMX19_03225 0.59 -1.0
526,597 - MPMX19_03225 0.59 -0.3
526,597 - MPMX19_03225 0.59 +0.2
526,597 - MPMX19_03225 0.59 +0.8
526,597 - MPMX19_03225 0.59 -0.4
526,597 - MPMX19_03225 0.59 -0.0
526,597 - MPMX19_03225 0.59 -0.3
526,597 - MPMX19_03225 0.59 -0.3
526,605 + MPMX19_03225 0.60 -1.3
526,605 + MPMX19_03225 0.60 -0.6
526,605 + MPMX19_03225 0.60 -1.1
526,605 + MPMX19_03225 0.60 +0.3
526,605 + MPMX19_03225 0.60 -0.9
526,605 + MPMX19_03225 0.60 +0.3
526,605 + MPMX19_03225 0.60 +0.9
526,606 - MPMX19_03225 0.61 -0.7
526,606 - MPMX19_03225 0.61 -0.6
526,606 - MPMX19_03225 0.61 +0.8
526,606 - MPMX19_03225 0.61 +0.6
526,636 + MPMX19_03225 0.66 +1.6
526,636 + MPMX19_03225 0.66 -0.7
526,636 + MPMX19_03225 0.66 +0.1
526,636 + MPMX19_03225 0.66 +0.3
526,636 + MPMX19_03225 0.66 +0.6
526,636 + MPMX19_03225 0.66 +1.7
526,636 + MPMX19_03225 0.66 -0.6
526,636 + MPMX19_03225 0.66 -0.2
526,637 - MPMX19_03225 0.66 -1.6
526,637 - MPMX19_03225 0.66 -2.0
526,637 - MPMX19_03225 0.66 -0.2
526,637 - MPMX19_03225 0.66 +1.1
526,638 + MPMX19_03225 0.66 +0.4
526,638 + MPMX19_03225 0.66 -0.7
526,638 + MPMX19_03225 0.66 -0.9
526,638 + MPMX19_03225 0.66 -0.6
526,638 + MPMX19_03225 0.66 -0.6
526,638 + MPMX19_03225 0.66 +0.5
526,639 - MPMX19_03225 0.67 -2.3
526,639 - MPMX19_03225 0.67 -1.7
526,639 - MPMX19_03225 0.67 -1.3
526,639 - MPMX19_03225 0.67 +0.3
526,639 - MPMX19_03225 0.67 -0.6
526,639 - MPMX19_03225 0.67 -0.2
526,639 - MPMX19_03225 0.67 -0.7
526,639 - MPMX19_03225 0.67 +0.5
526,639 - MPMX19_03225 0.67 +0.3
526,650 + MPMX19_03225 0.69 -0.2
526,668 + MPMX19_03225 0.72 -1.9
526,668 + MPMX19_03225 0.72 -1.1
526,668 + MPMX19_03225 0.72 -1.3
526,669 - MPMX19_03225 0.72 -1.0
526,669 - MPMX19_03225 0.72 +1.1
526,739 - MPMX19_03225 0.85 -0.6
526,739 - MPMX19_03225 0.85 -0.7
526,878 + +0.3
526,878 + -0.8
526,878 + -0.3
527,220 + -0.0
527,220 + -2.5
527,220 + -0.6
527,221 - +0.7
527,221 - -0.5
527,221 - -0.6
527,262 + -0.9
527,263 - -0.1
527,263 - -0.7
527,270 + +0.8
527,271 - +0.8
527,271 - +1.1
527,271 - +0.1
527,282 + -0.7
527,282 + -0.4
527,294 + MPMX19_03226 0.11 -1.9
527,320 + MPMX19_03226 0.20 -0.0
527,320 + MPMX19_03226 0.20 +0.2
527,320 + MPMX19_03226 0.20 -0.6
527,321 - MPMX19_03226 0.20 -1.7
527,321 - MPMX19_03226 0.20 -1.4
527,321 - MPMX19_03226 0.20 -1.7
527,381 - MPMX19_03226 0.41 -1.6
527,668 + +0.6

Or see this region's nucleotide sequence