Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03193 and MPMX19_03194 are separated by 49 nucleotides MPMX19_03194 and MPMX19_03195 are separated by 278 nucleotides MPMX19_03195 and MPMX19_03196 are separated by 68 nucleotides MPMX19_03196 and MPMX19_03197 are separated by 363 nucleotides MPMX19_03197 and MPMX19_03198 overlap by 4 nucleotides MPMX19_03198 and MPMX19_03199 are separated by 4 nucleotides
MPMX19_03193: MPMX19_03193 - hypothetical protein, at 490,877 to 491,161
_03193
MPMX19_03194: MPMX19_03194 - hypothetical protein, at 491,211 to 491,366
_03194
MPMX19_03195: MPMX19_03195 - hypothetical protein, at 491,645 to 491,947
_03195
MPMX19_03196: MPMX19_03196 - hypothetical protein, at 492,016 to 492,756
_03196
MPMX19_03197: MPMX19_03197 - hypothetical protein, at 493,120 to 493,443
_03197
MPMX19_03198: MPMX19_03198 - hypothetical protein, at 493,440 to 493,682
_03198
MPMX19_03199: MPMX19_03199 - hypothetical protein, at 493,687 to 494,049
_03199
Position (kb) 492
493 Strain fitness (log2 ratio) -2
-1
0
1 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.065 kb on - strand, within MPMX19_03193 at 491.065 kb on - strand, within MPMX19_03193 at 491.065 kb on - strand, within MPMX19_03193 at 491.065 kb on - strand, within MPMX19_03193 at 491.065 kb on - strand, within MPMX19_03193 at 491.065 kb on - strand, within MPMX19_03193 at 491.065 kb on - strand, within MPMX19_03193 at 491.065 kb on - strand, within MPMX19_03193 at 491.123 kb on + strand, within MPMX19_03193 at 491.123 kb on + strand, within MPMX19_03193 at 491.212 kb on + strand at 491.213 kb on - strand at 491.275 kb on + strand, within MPMX19_03194 at 491.275 kb on + strand, within MPMX19_03194 at 491.275 kb on + strand, within MPMX19_03194 at 491.399 kb on - strand at 491.455 kb on - strand at 491.498 kb on + strand at 491.498 kb on + strand at 491.498 kb on + strand at 491.499 kb on - strand at 491.524 kb on + strand at 491.598 kb on + strand at 491.599 kb on - strand at 491.681 kb on + strand, within MPMX19_03195 at 491.681 kb on + strand, within MPMX19_03195 at 491.682 kb on - strand, within MPMX19_03195 at 491.682 kb on - strand, within MPMX19_03195 at 491.961 kb on - strand at 491.972 kb on + strand at 491.972 kb on + strand at 491.972 kb on + strand at 491.982 kb on - strand at 491.982 kb on - strand at 492.040 kb on + strand at 492.040 kb on + strand at 492.040 kb on + strand at 492.041 kb on - strand at 492.041 kb on - strand at 492.041 kb on - strand at 492.196 kb on + strand, within MPMX19_03196 at 492.196 kb on + strand, within MPMX19_03196 at 492.196 kb on + strand, within MPMX19_03196 at 492.196 kb on + strand, within MPMX19_03196 at 492.197 kb on - strand, within MPMX19_03196 at 492.197 kb on - strand, within MPMX19_03196 at 492.488 kb on + strand, within MPMX19_03196 at 492.489 kb on - strand, within MPMX19_03196 at 492.816 kb on + strand at 492.816 kb on + strand at 492.984 kb on + strand at 493.119 kb on + strand at 493.120 kb on - strand at 493.120 kb on - strand at 493.155 kb on + strand, within MPMX19_03197 at 493.155 kb on + strand, within MPMX19_03197 at 493.156 kb on - strand, within MPMX19_03197 at 493.198 kb on + strand, within MPMX19_03197 at 493.198 kb on + strand, within MPMX19_03197 at 493.365 kb on + strand, within MPMX19_03197 at 493.365 kb on + strand, within MPMX19_03197 at 493.365 kb on + strand, within MPMX19_03197 at 493.365 kb on + strand, within MPMX19_03197 at 493.366 kb on - strand, within MPMX19_03197 at 493.366 kb on - strand, within MPMX19_03197 at 493.425 kb on - strand at 493.548 kb on + strand, within MPMX19_03198 at 493.583 kb on + strand, within MPMX19_03198 at 493.583 kb on + strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.634 kb on + strand, within MPMX19_03198 at 493.634 kb on + strand, within MPMX19_03198 at 493.634 kb on + strand, within MPMX19_03198 at 493.634 kb on + strand, within MPMX19_03198 at 493.635 kb on - strand, within MPMX19_03198 at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.695 kb on - strand at 493.695 kb on - strand at 493.695 kb on - strand at 493.695 kb on - strand at 493.695 kb on - strand at 493.695 kb on - strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.706 kb on - strand at 493.706 kb on - strand at 493.706 kb on - strand at 493.706 kb on - strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 491,064 + MPMX19_03193 0.66 -0.6 491,064 + MPMX19_03193 0.66 -1.9 491,064 + MPMX19_03193 0.66 -1.6 491,064 + MPMX19_03193 0.66 -1.3 491,064 + MPMX19_03193 0.66 -0.7 491,064 + MPMX19_03193 0.66 -0.4 491,064 + MPMX19_03193 0.66 +0.4 491,064 + MPMX19_03193 0.66 -1.1 491,064 + MPMX19_03193 0.66 -0.2 491,064 + MPMX19_03193 0.66 -0.3 491,065 - MPMX19_03193 0.66 -1.1 491,065 - MPMX19_03193 0.66 +0.4 491,065 - MPMX19_03193 0.66 -0.3 491,065 - MPMX19_03193 0.66 -2.7 491,065 - MPMX19_03193 0.66 -0.2 491,065 - MPMX19_03193 0.66 -1.2 491,065 - MPMX19_03193 0.66 -2.2 491,065 - MPMX19_03193 0.66 -0.1 491,123 + MPMX19_03193 0.86 -0.7 491,123 + MPMX19_03193 0.86 -1.7 491,212 + -0.7 491,213 - -1.3 491,275 + MPMX19_03194 0.41 -0.5 491,275 + MPMX19_03194 0.41 -1.9 491,275 + MPMX19_03194 0.41 -0.1 491,399 - +0.3 491,455 - -0.9 491,498 + -2.5 491,498 + -1.2 491,498 + +1.2 491,499 - +0.8 491,524 + +0.4 491,598 + +0.1 491,599 - -0.7 491,681 + MPMX19_03195 0.12 +1.6 491,681 + MPMX19_03195 0.12 -1.0 491,682 - MPMX19_03195 0.12 -0.2 491,682 - MPMX19_03195 0.12 -0.2 491,961 - -0.4 491,972 + -0.1 491,972 + +0.2 491,972 + -0.9 491,982 - -1.5 491,982 - -1.5 492,040 + -1.3 492,040 + -0.1 492,040 + +0.8 492,041 - -0.3 492,041 - -0.6 492,041 - -0.5 492,196 + MPMX19_03196 0.24 -0.7 492,196 + MPMX19_03196 0.24 -1.8 492,196 + MPMX19_03196 0.24 +0.3 492,196 + MPMX19_03196 0.24 -1.7 492,197 - MPMX19_03196 0.24 -1.0 492,197 - MPMX19_03196 0.24 -1.7 492,488 + MPMX19_03196 0.64 -0.7 492,489 - MPMX19_03196 0.64 +0.2 492,816 + -0.5 492,816 + -0.7 492,984 + -1.2 493,119 + +0.6 493,120 - -0.7 493,120 - +0.1 493,155 + MPMX19_03197 0.11 -1.7 493,155 + MPMX19_03197 0.11 -1.2 493,156 - MPMX19_03197 0.11 +0.5 493,198 + MPMX19_03197 0.24 -1.7 493,198 + MPMX19_03197 0.24 -1.0 493,365 + MPMX19_03197 0.76 +1.2 493,365 + MPMX19_03197 0.76 -0.4 493,365 + MPMX19_03197 0.76 -0.3 493,365 + MPMX19_03197 0.76 +0.2 493,366 - MPMX19_03197 0.76 -0.8 493,366 - MPMX19_03197 0.76 -1.0 493,425 - +0.0 493,548 + MPMX19_03198 0.44 -0.6 493,583 + MPMX19_03198 0.59 +1.1 493,583 + MPMX19_03198 0.59 +0.0 493,584 - MPMX19_03198 0.59 +0.6 493,584 - MPMX19_03198 0.59 -0.7 493,584 - MPMX19_03198 0.59 +0.6 493,584 - MPMX19_03198 0.59 -1.0 493,584 - MPMX19_03198 0.59 -0.8 493,584 - MPMX19_03198 0.59 +0.6 493,584 - MPMX19_03198 0.59 +0.0 493,584 - MPMX19_03198 0.59 -0.4 493,634 + MPMX19_03198 0.80 +1.6 493,634 + MPMX19_03198 0.80 -1.6 493,634 + MPMX19_03198 0.80 +0.6 493,634 + MPMX19_03198 0.80 -0.5 493,635 - MPMX19_03198 0.80 -0.9 493,694 + -0.2 493,694 + -0.7 493,694 + -1.4 493,694 + -0.4 493,694 + -0.4 493,694 + -1.1 493,694 + +0.5 493,694 + -1.0 493,694 + +0.4 493,695 - -1.1 493,695 - -1.6 493,695 - +0.2 493,695 - -0.3 493,695 - -0.2 493,695 - -2.5 493,705 + +0.6 493,705 + -1.0 493,705 + -1.2 493,705 + -0.5 493,705 + +0.3 493,705 + -0.4 493,705 + -1.5 493,705 + -2.1 493,705 + -0.5 493,705 + -0.7 493,705 + -0.1 493,706 - -0.4 493,706 - +0.6 493,706 - -0.8 493,706 - +0.5 493,707 + +0.7 493,707 + -0.7 493,707 + -0.2 493,707 + -2.7 493,707 + -1.8 493,707 + -0.1 493,707 + -0.3 493,707 + -0.7 493,707 + -1.7 493,708 - +0.2 493,708 - -0.9 493,708 - +0.4 493,708 - -1.0 493,708 - -0.8 493,708 - +1.2 493,708 - -1.1 493,708 - -1.4 493,708 - -0.2
Or see this region's nucleotide sequence