Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03192

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03191 and MPMX19_03192 are separated by 186 nucleotidesMPMX19_03192 and MPMX19_03193 are separated by 87 nucleotidesMPMX19_03193 and MPMX19_03194 are separated by 49 nucleotidesMPMX19_03194 and MPMX19_03195 are separated by 278 nucleotides MPMX19_03191: MPMX19_03191 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 487,250 to 490,405 _03191 MPMX19_03192: MPMX19_03192 - hypothetical protein, at 490,592 to 490,789 _03192 MPMX19_03193: MPMX19_03193 - hypothetical protein, at 490,877 to 491,161 _03193 MPMX19_03194: MPMX19_03194 - hypothetical protein, at 491,211 to 491,366 _03194 MPMX19_03195: MPMX19_03195 - hypothetical protein, at 491,645 to 491,947 _03195 Position (kb) 490 491Strain fitness (log2 ratio) -2 -1 0 1at 489.610 kb on + strand, within MPMX19_03191at 489.611 kb on - strand, within MPMX19_03191at 489.636 kb on + strand, within MPMX19_03191at 489.636 kb on + strand, within MPMX19_03191at 489.636 kb on + strand, within MPMX19_03191at 489.636 kb on + strand, within MPMX19_03191at 489.636 kb on + strand, within MPMX19_03191at 489.636 kb on + strand, within MPMX19_03191at 489.636 kb on + strand, within MPMX19_03191at 489.636 kb on + strand, within MPMX19_03191at 489.636 kb on + strand, within MPMX19_03191at 489.636 kb on + strand, within MPMX19_03191at 489.636 kb on + strand, within MPMX19_03191at 489.636 kb on + strand, within MPMX19_03191at 489.636 kb on + strand, within MPMX19_03191at 489.636 kb on + strand, within MPMX19_03191at 489.636 kb on + strand, within MPMX19_03191at 489.636 kb on + strand, within MPMX19_03191at 489.636 kb on + strand, within MPMX19_03191at 489.637 kb on - strand, within MPMX19_03191at 489.637 kb on - strand, within MPMX19_03191at 489.637 kb on - strand, within MPMX19_03191at 489.637 kb on - strand, within MPMX19_03191at 489.637 kb on - strand, within MPMX19_03191at 489.637 kb on - strand, within MPMX19_03191at 489.637 kb on - strand, within MPMX19_03191at 489.637 kb on - strand, within MPMX19_03191at 489.637 kb on - strand, within MPMX19_03191at 489.637 kb on - strand, within MPMX19_03191at 489.637 kb on - strand, within MPMX19_03191at 489.637 kb on - strand, within MPMX19_03191at 489.637 kb on - strand, within MPMX19_03191at 489.637 kb on - strand, within MPMX19_03191at 489.637 kb on - strand, within MPMX19_03191at 489.637 kb on - strand, within MPMX19_03191at 489.637 kb on - strand, within MPMX19_03191at 489.637 kb on - strand, within MPMX19_03191at 489.637 kb on - strand, within MPMX19_03191at 489.708 kb on + strand, within MPMX19_03191at 489.708 kb on + strand, within MPMX19_03191at 489.708 kb on + strand, within MPMX19_03191at 489.708 kb on + strand, within MPMX19_03191at 489.709 kb on - strand, within MPMX19_03191at 489.709 kb on - strand, within MPMX19_03191at 489.709 kb on - strand, within MPMX19_03191at 489.709 kb on - strand, within MPMX19_03191at 489.709 kb on - strand, within MPMX19_03191at 489.840 kb on + strand, within MPMX19_03191at 489.840 kb on + strand, within MPMX19_03191at 489.840 kb on + strand, within MPMX19_03191at 489.841 kb on - strand, within MPMX19_03191at 490.173 kb on + strandat 490.173 kb on + strandat 490.173 kb on + strandat 490.173 kb on + strandat 490.173 kb on + strandat 490.173 kb on + strandat 490.173 kb on + strandat 490.173 kb on + strandat 490.173 kb on + strandat 490.173 kb on + strandat 490.173 kb on + strandat 490.173 kb on + strandat 490.173 kb on + strandat 490.173 kb on + strandat 490.173 kb on + strandat 490.173 kb on + strandat 490.173 kb on + strandat 490.173 kb on + strandat 490.173 kb on + strandat 490.173 kb on + strandat 490.174 kb on - strandat 490.174 kb on - strandat 490.174 kb on - strandat 490.174 kb on - strandat 490.174 kb on - strandat 490.174 kb on - strandat 490.174 kb on - strandat 490.174 kb on - strandat 490.174 kb on - strandat 490.174 kb on - strandat 490.174 kb on - strandat 490.174 kb on - strandat 490.174 kb on - strandat 490.174 kb on - strandat 490.174 kb on - strandat 490.174 kb on - strandat 490.174 kb on - strandat 490.174 kb on - strandat 490.494 kb on + strandat 490.495 kb on - strandat 490.495 kb on - strandat 490.601 kb on - strandat 490.601 kb on - strandat 490.601 kb on - strandat 490.601 kb on - strandat 490.601 kb on - strandat 490.636 kb on - strand, within MPMX19_03192at 490.778 kb on + strandat 490.778 kb on + strandat 490.778 kb on + strandat 490.779 kb on - strandat 490.810 kb on - strandat 491.014 kb on - strand, within MPMX19_03193at 491.064 kb on + strand, within MPMX19_03193at 491.064 kb on + strand, within MPMX19_03193at 491.064 kb on + strand, within MPMX19_03193at 491.064 kb on + strand, within MPMX19_03193at 491.064 kb on + strand, within MPMX19_03193at 491.064 kb on + strand, within MPMX19_03193at 491.064 kb on + strand, within MPMX19_03193at 491.064 kb on + strand, within MPMX19_03193at 491.064 kb on + strand, within MPMX19_03193at 491.064 kb on + strand, within MPMX19_03193at 491.065 kb on - strand, within MPMX19_03193at 491.065 kb on - strand, within MPMX19_03193at 491.065 kb on - strand, within MPMX19_03193at 491.065 kb on - strand, within MPMX19_03193at 491.065 kb on - strand, within MPMX19_03193at 491.065 kb on - strand, within MPMX19_03193at 491.065 kb on - strand, within MPMX19_03193at 491.065 kb on - strand, within MPMX19_03193at 491.123 kb on + strand, within MPMX19_03193at 491.123 kb on + strand, within MPMX19_03193at 491.212 kb on + strandat 491.213 kb on - strandat 491.275 kb on + strand, within MPMX19_03194at 491.275 kb on + strand, within MPMX19_03194at 491.275 kb on + strand, within MPMX19_03194at 491.399 kb on - strandat 491.455 kb on - strandat 491.498 kb on + strandat 491.498 kb on + strandat 491.498 kb on + strandat 491.499 kb on - strandat 491.524 kb on + strandat 491.598 kb on + strandat 491.599 kb on - strandat 491.681 kb on + strand, within MPMX19_03195at 491.681 kb on + strand, within MPMX19_03195at 491.682 kb on - strand, within MPMX19_03195at 491.682 kb on - strand, within MPMX19_03195

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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489,610 + MPMX19_03191 0.75 +0.0
489,611 - MPMX19_03191 0.75 -0.9
489,636 + MPMX19_03191 0.76 -0.1
489,636 + MPMX19_03191 0.76 +1.6
489,636 + MPMX19_03191 0.76 -1.6
489,636 + MPMX19_03191 0.76 -2.0
489,636 + MPMX19_03191 0.76 +0.0
489,636 + MPMX19_03191 0.76 -1.0
489,636 + MPMX19_03191 0.76 -0.5
489,636 + MPMX19_03191 0.76 +0.0
489,636 + MPMX19_03191 0.76 +0.1
489,636 + MPMX19_03191 0.76 +0.0
489,636 + MPMX19_03191 0.76 +0.3
489,636 + MPMX19_03191 0.76 -0.9
489,636 + MPMX19_03191 0.76 +0.5
489,636 + MPMX19_03191 0.76 +0.6
489,636 + MPMX19_03191 0.76 -0.8
489,636 + MPMX19_03191 0.76 +0.1
489,636 + MPMX19_03191 0.76 -0.2
489,637 - MPMX19_03191 0.76 -0.4
489,637 - MPMX19_03191 0.76 -0.9
489,637 - MPMX19_03191 0.76 -1.5
489,637 - MPMX19_03191 0.76 +0.4
489,637 - MPMX19_03191 0.76 +0.8
489,637 - MPMX19_03191 0.76 -0.4
489,637 - MPMX19_03191 0.76 -1.4
489,637 - MPMX19_03191 0.76 -1.3
489,637 - MPMX19_03191 0.76 -2.1
489,637 - MPMX19_03191 0.76 +0.0
489,637 - MPMX19_03191 0.76 -1.7
489,637 - MPMX19_03191 0.76 +0.4
489,637 - MPMX19_03191 0.76 -1.3
489,637 - MPMX19_03191 0.76 -0.1
489,637 - MPMX19_03191 0.76 +0.9
489,637 - MPMX19_03191 0.76 -0.9
489,637 - MPMX19_03191 0.76 +0.3
489,637 - MPMX19_03191 0.76 +0.9
489,637 - MPMX19_03191 0.76 -2.2
489,708 + MPMX19_03191 0.78 -0.6
489,708 + MPMX19_03191 0.78 -1.0
489,708 + MPMX19_03191 0.78 -1.2
489,708 + MPMX19_03191 0.78 +0.2
489,709 - MPMX19_03191 0.78 -2.6
489,709 - MPMX19_03191 0.78 +0.0
489,709 - MPMX19_03191 0.78 -0.5
489,709 - MPMX19_03191 0.78 -1.5
489,709 - MPMX19_03191 0.78 -2.1
489,840 + MPMX19_03191 0.82 -2.0
489,840 + MPMX19_03191 0.82 -0.2
489,840 + MPMX19_03191 0.82 -0.6
489,841 - MPMX19_03191 0.82 +0.4
490,173 + -0.7
490,173 + -0.2
490,173 + +0.8
490,173 + -0.5
490,173 + -1.5
490,173 + -0.1
490,173 + +0.2
490,173 + +0.0
490,173 + -0.6
490,173 + -0.4
490,173 + -2.0
490,173 + -1.8
490,173 + -0.2
490,173 + -0.7
490,173 + -0.8
490,173 + -1.5
490,173 + +0.1
490,173 + +0.8
490,173 + -1.3
490,173 + -0.6
490,174 - -0.1
490,174 - -0.2
490,174 - -0.3
490,174 - -2.2
490,174 - -0.8
490,174 - +0.2
490,174 - -0.7
490,174 - -1.4
490,174 - +0.8
490,174 - -1.9
490,174 - -0.3
490,174 - -0.8
490,174 - +0.1
490,174 - -0.4
490,174 - -0.1
490,174 - +0.4
490,174 - -1.1
490,174 - -1.0
490,494 + -1.5
490,495 - +0.0
490,495 - -0.1
490,601 - -0.4
490,601 - +0.0
490,601 - +0.3
490,601 - -0.5
490,601 - -0.2
490,636 - MPMX19_03192 0.22 -0.9
490,778 + +0.3
490,778 + +0.3
490,778 + -1.8
490,779 - -2.3
490,810 - +1.2
491,014 - MPMX19_03193 0.48 -0.3
491,064 + MPMX19_03193 0.66 -0.6
491,064 + MPMX19_03193 0.66 -1.9
491,064 + MPMX19_03193 0.66 -1.6
491,064 + MPMX19_03193 0.66 -1.3
491,064 + MPMX19_03193 0.66 -0.7
491,064 + MPMX19_03193 0.66 -0.4
491,064 + MPMX19_03193 0.66 +0.4
491,064 + MPMX19_03193 0.66 -1.1
491,064 + MPMX19_03193 0.66 -0.2
491,064 + MPMX19_03193 0.66 -0.3
491,065 - MPMX19_03193 0.66 -1.1
491,065 - MPMX19_03193 0.66 +0.4
491,065 - MPMX19_03193 0.66 -0.3
491,065 - MPMX19_03193 0.66 -2.7
491,065 - MPMX19_03193 0.66 -0.2
491,065 - MPMX19_03193 0.66 -1.2
491,065 - MPMX19_03193 0.66 -2.2
491,065 - MPMX19_03193 0.66 -0.1
491,123 + MPMX19_03193 0.86 -0.7
491,123 + MPMX19_03193 0.86 -1.7
491,212 + -0.7
491,213 - -1.3
491,275 + MPMX19_03194 0.41 -0.5
491,275 + MPMX19_03194 0.41 -1.9
491,275 + MPMX19_03194 0.41 -0.1
491,399 - +0.3
491,455 - -0.9
491,498 + -2.5
491,498 + -1.2
491,498 + +1.2
491,499 - +0.8
491,524 + +0.4
491,598 + +0.1
491,599 - -0.7
491,681 + MPMX19_03195 0.12 +1.6
491,681 + MPMX19_03195 0.12 -1.0
491,682 - MPMX19_03195 0.12 -0.2
491,682 - MPMX19_03195 0.12 -0.2

Or see this region's nucleotide sequence