Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03186 and MPMX19_03187 are separated by 356 nucleotides MPMX19_03187 and MPMX19_03188 are separated by 46 nucleotides MPMX19_03188 and MPMX19_03189 are separated by 324 nucleotides
MPMX19_03186: MPMX19_03186 - hypothetical protein, at 481,271 to 482,917
_03186
MPMX19_03187: MPMX19_03187 - Magnesium-transporting ATPase, P-type 1, at 483,274 to 485,817
_03187
MPMX19_03188: MPMX19_03188 - hypothetical protein, at 485,864 to 486,037
_03188
MPMX19_03189: MPMX19_03189 - hypothetical protein, at 486,362 to 486,655
_03189
Position (kb) 483
484
485
486 Strain fitness (log2 ratio) -2
-1
0
1
2 at 482.275 kb on - strand, within MPMX19_03186 at 482.841 kb on + strand at 482.841 kb on + strand at 482.841 kb on + strand at 482.841 kb on + strand at 482.841 kb on + strand at 482.842 kb on - strand at 482.842 kb on - strand at 482.842 kb on - strand at 482.842 kb on - strand at 482.842 kb on - strand at 483.053 kb on + strand at 483.069 kb on + strand at 483.070 kb on - strand at 483.088 kb on + strand at 483.088 kb on + strand at 483.206 kb on + strand at 483.243 kb on + strand at 483.243 kb on + strand at 483.244 kb on - strand at 483.244 kb on - strand at 483.244 kb on - strand at 483.254 kb on - strand at 483.254 kb on - strand at 483.254 kb on - strand at 483.254 kb on - strand at 483.254 kb on - strand at 483.254 kb on - strand at 483.330 kb on + strand at 483.330 kb on + strand at 483.330 kb on + strand at 483.331 kb on - strand at 483.331 kb on - strand at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.571 kb on - strand, within MPMX19_03187 at 484.571 kb on - strand, within MPMX19_03187 at 484.571 kb on - strand, within MPMX19_03187 at 484.571 kb on - strand, within MPMX19_03187 at 484.571 kb on - strand, within MPMX19_03187 at 484.571 kb on - strand, within MPMX19_03187 at 484.571 kb on - strand, within MPMX19_03187 at 485.225 kb on - strand, within MPMX19_03187 at 485.225 kb on - strand, within MPMX19_03187 at 485.225 kb on - strand, within MPMX19_03187 at 485.225 kb on - strand, within MPMX19_03187 at 485.225 kb on - strand, within MPMX19_03187 at 485.225 kb on - strand, within MPMX19_03187 at 485.341 kb on + strand, within MPMX19_03187 at 485.341 kb on + strand, within MPMX19_03187 at 485.341 kb on + strand, within MPMX19_03187 at 485.486 kb on - strand, within MPMX19_03187 at 485.486 kb on - strand, within MPMX19_03187 at 485.486 kb on - strand, within MPMX19_03187 at 485.486 kb on - strand, within MPMX19_03187 at 485.486 kb on - strand, within MPMX19_03187 at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.726 kb on - strand at 485.726 kb on - strand at 485.726 kb on - strand at 485.726 kb on - strand at 485.726 kb on - strand at 485.726 kb on - strand at 485.726 kb on - strand at 485.726 kb on - strand at 485.726 kb on - strand at 485.751 kb on + strand at 485.752 kb on - strand at 485.752 kb on - strand at 485.752 kb on - strand at 485.755 kb on + strand at 485.755 kb on + strand at 485.755 kb on + strand at 485.755 kb on + strand at 485.756 kb on - strand at 485.756 kb on - strand at 485.756 kb on - strand at 485.756 kb on - strand at 485.756 kb on - strand at 486.016 kb on + strand, within MPMX19_03188 at 486.017 kb on - strand, within MPMX19_03188 at 486.062 kb on + strand at 486.063 kb on - strand at 486.063 kb on - strand at 486.064 kb on + strand at 486.064 kb on + strand at 486.064 kb on + strand at 486.064 kb on + strand at 486.064 kb on + strand at 486.064 kb on + strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.184 kb on + strand at 486.185 kb on - strand at 486.185 kb on - strand at 486.209 kb on + strand at 486.209 kb on + strand at 486.210 kb on - strand at 486.219 kb on + strand at 486.219 kb on + strand at 486.219 kb on + strand at 486.220 kb on - strand at 486.279 kb on + strand at 486.280 kb on - strand at 486.280 kb on - strand at 486.280 kb on - strand at 486.280 kb on - strand at 486.302 kb on + strand at 486.302 kb on + strand at 486.302 kb on + strand at 486.302 kb on + strand at 486.303 kb on - strand at 486.322 kb on + strand at 486.322 kb on + strand at 486.322 kb on + strand at 486.322 kb on + strand at 486.322 kb on + strand at 486.323 kb on - strand at 486.323 kb on - strand at 486.323 kb on - strand at 486.323 kb on - strand at 486.323 kb on - strand at 486.345 kb on - strand at 486.427 kb on - strand, within MPMX19_03189 at 486.647 kb on + strand at 486.647 kb on + strand at 486.647 kb on + strand at 486.647 kb on + strand at 486.648 kb on - strand at 486.648 kb on - strand at 486.670 kb on + strand at 486.707 kb on + strand at 486.707 kb on + strand at 486.707 kb on + strand at 486.708 kb on - strand at 486.708 kb on - strand at 486.723 kb on - strand at 486.782 kb on + strand at 486.782 kb on + strand at 486.802 kb on + strand at 486.803 kb on - strand at 486.803 kb on - strand at 486.803 kb on - strand at 486.803 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 482,275 - MPMX19_03186 0.61 -0.5 482,841 + -1.7 482,841 + -0.4 482,841 + -1.0 482,841 + -1.9 482,841 + +0.3 482,842 - -0.1 482,842 - -0.4 482,842 - +0.4 482,842 - +0.4 482,842 - -1.4 483,053 + -2.0 483,069 + +0.3 483,070 - -0.2 483,088 + +0.2 483,088 + -1.4 483,206 + -0.5 483,243 + -0.6 483,243 + -1.7 483,244 - -1.4 483,244 - +0.3 483,244 - -1.0 483,254 - +0.1 483,254 - -0.6 483,254 - +0.2 483,254 - +0.4 483,254 - +0.4 483,254 - +0.8 483,330 + -0.5 483,330 + -1.2 483,330 + -1.4 483,331 - +0.3 483,331 - -0.6 484,070 + MPMX19_03187 0.31 -0.9 484,070 + MPMX19_03187 0.31 -1.4 484,070 + MPMX19_03187 0.31 -0.8 484,070 + MPMX19_03187 0.31 -1.3 484,070 + MPMX19_03187 0.31 -0.7 484,070 + MPMX19_03187 0.31 -0.6 484,070 + MPMX19_03187 0.31 -0.7 484,070 + MPMX19_03187 0.31 -0.4 484,070 + MPMX19_03187 0.31 -1.1 484,070 + MPMX19_03187 0.31 -1.1 484,070 + MPMX19_03187 0.31 -0.9 484,070 + MPMX19_03187 0.31 -2.2 484,070 + MPMX19_03187 0.31 +1.0 484,070 + MPMX19_03187 0.31 -1.0 484,070 + MPMX19_03187 0.31 -0.5 484,070 + MPMX19_03187 0.31 -2.2 484,070 + MPMX19_03187 0.31 -0.2 484,253 + MPMX19_03187 0.38 -1.0 484,253 + MPMX19_03187 0.38 -1.9 484,253 + MPMX19_03187 0.38 -1.7 484,253 + MPMX19_03187 0.38 -1.6 484,253 + MPMX19_03187 0.38 -1.5 484,253 + MPMX19_03187 0.38 -0.9 484,253 + MPMX19_03187 0.38 -1.7 484,253 + MPMX19_03187 0.38 -1.9 484,253 + MPMX19_03187 0.38 +0.1 484,253 + MPMX19_03187 0.38 -1.0 484,253 + MPMX19_03187 0.38 +0.8 484,253 + MPMX19_03187 0.38 -0.8 484,253 + MPMX19_03187 0.38 -0.4 484,253 + MPMX19_03187 0.38 -0.0 484,253 + MPMX19_03187 0.38 -0.7 484,253 + MPMX19_03187 0.38 -0.7 484,253 + MPMX19_03187 0.38 -1.4 484,253 + MPMX19_03187 0.38 -0.3 484,253 + MPMX19_03187 0.38 -1.8 484,253 + MPMX19_03187 0.38 -1.2 484,253 + MPMX19_03187 0.38 -0.7 484,253 + MPMX19_03187 0.38 +0.6 484,571 - MPMX19_03187 0.51 -0.2 484,571 - MPMX19_03187 0.51 -2.0 484,571 - MPMX19_03187 0.51 -2.5 484,571 - MPMX19_03187 0.51 -0.0 484,571 - MPMX19_03187 0.51 +0.6 484,571 - MPMX19_03187 0.51 -0.4 484,571 - MPMX19_03187 0.51 -2.4 485,225 - MPMX19_03187 0.77 -2.1 485,225 - MPMX19_03187 0.77 -1.6 485,225 - MPMX19_03187 0.77 +0.3 485,225 - MPMX19_03187 0.77 -2.1 485,225 - MPMX19_03187 0.77 -1.0 485,225 - MPMX19_03187 0.77 -0.6 485,341 + MPMX19_03187 0.81 -0.2 485,341 + MPMX19_03187 0.81 +0.3 485,341 + MPMX19_03187 0.81 +0.4 485,486 - MPMX19_03187 0.87 -0.0 485,486 - MPMX19_03187 0.87 -1.7 485,486 - MPMX19_03187 0.87 +0.8 485,486 - MPMX19_03187 0.87 -0.1 485,486 - MPMX19_03187 0.87 -0.0 485,725 + +1.4 485,725 + -0.0 485,725 + -1.4 485,725 + -1.2 485,725 + -0.6 485,725 + +0.4 485,725 + -0.7 485,725 + -2.0 485,725 + -0.3 485,725 + -0.2 485,725 + -1.0 485,725 + -0.2 485,725 + -1.2 485,725 + +2.0 485,725 + +0.7 485,725 + -0.8 485,725 + -1.2 485,726 - +0.4 485,726 - +0.7 485,726 - -1.1 485,726 - -0.1 485,726 - -0.5 485,726 - -0.0 485,726 - +1.0 485,726 - +0.6 485,726 - -0.0 485,751 + -0.9 485,752 - +0.3 485,752 - +0.1 485,752 - -0.6 485,755 + -2.3 485,755 + -1.0 485,755 + +1.0 485,755 + -0.2 485,756 - +0.6 485,756 - -0.7 485,756 - -0.8 485,756 - -0.4 485,756 - -1.2 486,016 + MPMX19_03188 0.87 +0.6 486,017 - MPMX19_03188 0.88 -0.6 486,062 + -1.1 486,063 - +0.8 486,063 - -1.4 486,064 + +0.1 486,064 + -0.8 486,064 + -2.2 486,064 + +0.4 486,064 + -2.1 486,064 + +1.6 486,065 - -1.7 486,065 - +0.2 486,065 - +0.3 486,065 - -0.0 486,065 - -0.5 486,065 - -0.6 486,065 - -0.1 486,065 - +1.1 486,065 - -1.3 486,065 - -0.0 486,065 - -2.2 486,065 - +0.7 486,065 - -0.0 486,065 - -1.7 486,184 + +0.6 486,185 - -0.5 486,185 - -0.6 486,209 + -1.6 486,209 + -0.0 486,210 - +0.2 486,219 + -2.2 486,219 + -1.4 486,219 + -1.4 486,220 - +0.6 486,279 + -0.4 486,280 - +0.6 486,280 - -1.2 486,280 - -0.7 486,280 - +0.4 486,302 + -1.4 486,302 + -0.0 486,302 + -0.3 486,302 + -1.0 486,303 - -1.5 486,322 + -0.3 486,322 + +0.2 486,322 + -0.4 486,322 + -0.4 486,322 + +1.4 486,323 - +0.6 486,323 - -1.7 486,323 - -0.2 486,323 - -0.3 486,323 - -0.4 486,345 - -0.1 486,427 - MPMX19_03189 0.22 -1.0 486,647 + -0.6 486,647 + +0.4 486,647 + -0.3 486,647 + +0.2 486,648 - -0.7 486,648 - -0.0 486,670 + +1.4 486,707 + +0.6 486,707 + +0.8 486,707 + -0.9 486,708 - +0.4 486,708 - -0.6 486,723 - -0.4 486,782 + +0.0 486,782 + -0.4 486,802 + -1.0 486,803 - -0.4 486,803 - -0.5 486,803 - -0.1 486,803 - -0.4
Or see this region's nucleotide sequence