Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03167 and MPMX19_03168 overlap by 4 nucleotides MPMX19_03168 and MPMX19_03169 are separated by 89 nucleotides MPMX19_03169 and MPMX19_03170 are separated by 28 nucleotides
MPMX19_03167: MPMX19_03167 - D-alanine--D-alanyl carrier protein ligase, at 459,110 to 463,228
_03167
MPMX19_03168: MPMX19_03168 - hypothetical protein, at 463,225 to 463,863
_03168
MPMX19_03169: MPMX19_03169 - Dihydroanticapsin 7-dehydrogenase, at 463,953 to 464,732
_03169
MPMX19_03170: MPMX19_03170 - L-lactate transporter, at 464,761 to 466,041
_03170
Position (kb) 463
464 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 462.225 kb on + strand, within MPMX19_03167 at 462.225 kb on + strand, within MPMX19_03167 at 462.225 kb on + strand, within MPMX19_03167 at 462.225 kb on + strand, within MPMX19_03167 at 462.225 kb on + strand, within MPMX19_03167 at 462.225 kb on + strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.459 kb on + strand, within MPMX19_03167 at 462.459 kb on + strand, within MPMX19_03167 at 462.459 kb on + strand, within MPMX19_03167 at 462.459 kb on + strand, within MPMX19_03167 at 462.459 kb on + strand, within MPMX19_03167 at 462.459 kb on + strand, within MPMX19_03167 at 462.459 kb on + strand, within MPMX19_03167 at 462.540 kb on + strand, within MPMX19_03167 at 462.541 kb on - strand, within MPMX19_03167 at 462.541 kb on - strand, within MPMX19_03167 at 462.541 kb on - strand, within MPMX19_03167 at 462.541 kb on - strand, within MPMX19_03167 at 462.541 kb on - strand, within MPMX19_03167 at 462.541 kb on - strand, within MPMX19_03167 at 462.564 kb on + strand, within MPMX19_03167 at 462.564 kb on + strand, within MPMX19_03167 at 462.564 kb on + strand, within MPMX19_03167 at 462.564 kb on + strand, within MPMX19_03167 at 462.564 kb on + strand, within MPMX19_03167 at 462.564 kb on + strand, within MPMX19_03167 at 462.565 kb on - strand, within MPMX19_03167 at 462.565 kb on - strand, within MPMX19_03167 at 462.565 kb on - strand, within MPMX19_03167 at 462.565 kb on - strand, within MPMX19_03167 at 462.565 kb on - strand, within MPMX19_03167 at 462.565 kb on - strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.636 kb on + strand, within MPMX19_03167 at 462.637 kb on - strand, within MPMX19_03167 at 462.637 kb on - strand, within MPMX19_03167 at 462.858 kb on + strand at 462.858 kb on + strand at 462.858 kb on + strand at 462.858 kb on + strand at 462.858 kb on + strand at 462.859 kb on - strand at 462.859 kb on - strand at 462.859 kb on - strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.026 kb on + strand at 463.026 kb on + strand at 463.026 kb on + strand at 463.026 kb on + strand at 463.026 kb on + strand at 463.026 kb on + strand at 463.026 kb on + strand at 463.026 kb on + strand at 463.026 kb on + strand at 463.026 kb on + strand at 463.026 kb on + strand at 463.026 kb on + strand at 463.026 kb on + strand at 463.027 kb on - strand at 463.027 kb on - strand at 463.027 kb on - strand at 463.027 kb on - strand at 463.027 kb on - strand at 463.027 kb on - strand at 463.287 kb on + strand at 463.287 kb on + strand at 463.288 kb on - strand at 463.288 kb on - strand at 463.288 kb on - strand at 463.344 kb on + strand, within MPMX19_03168 at 463.345 kb on - strand, within MPMX19_03168 at 463.345 kb on - strand, within MPMX19_03168 at 463.345 kb on - strand, within MPMX19_03168 at 463.345 kb on - strand, within MPMX19_03168 at 463.479 kb on + strand, within MPMX19_03168 at 463.479 kb on + strand, within MPMX19_03168 at 463.480 kb on - strand, within MPMX19_03168 at 463.480 kb on - strand, within MPMX19_03168 at 463.489 kb on + strand, within MPMX19_03168 at 463.489 kb on + strand, within MPMX19_03168 at 463.490 kb on - strand, within MPMX19_03168 at 463.490 kb on - strand, within MPMX19_03168 at 463.490 kb on - strand, within MPMX19_03168 at 463.490 kb on - strand, within MPMX19_03168 at 463.490 kb on - strand, within MPMX19_03168 at 463.490 kb on - strand, within MPMX19_03168 at 463.545 kb on + strand, within MPMX19_03168 at 463.545 kb on + strand, within MPMX19_03168 at 463.545 kb on + strand, within MPMX19_03168 at 463.545 kb on + strand, within MPMX19_03168 at 463.546 kb on - strand, within MPMX19_03168 at 463.546 kb on - strand, within MPMX19_03168 at 463.546 kb on - strand, within MPMX19_03168 at 463.698 kb on + strand, within MPMX19_03168 at 463.698 kb on + strand, within MPMX19_03168 at 463.698 kb on + strand, within MPMX19_03168 at 463.698 kb on + strand, within MPMX19_03168 at 463.698 kb on + strand, within MPMX19_03168 at 463.698 kb on + strand, within MPMX19_03168 at 463.698 kb on + strand, within MPMX19_03168 at 463.698 kb on + strand, within MPMX19_03168 at 463.699 kb on - strand, within MPMX19_03168 at 463.699 kb on - strand, within MPMX19_03168 at 463.699 kb on - strand, within MPMX19_03168 at 463.699 kb on - strand, within MPMX19_03168 at 463.699 kb on - strand, within MPMX19_03168 at 463.699 kb on - strand, within MPMX19_03168 at 463.699 kb on - strand, within MPMX19_03168 at 463.931 kb on + strand at 463.931 kb on + strand at 463.932 kb on - strand at 463.932 kb on - strand at 464.439 kb on + strand, within MPMX19_03169 at 464.439 kb on + strand, within MPMX19_03169 at 464.440 kb on - strand, within MPMX19_03169 at 464.440 kb on - strand, within MPMX19_03169 at 464.440 kb on - strand, within MPMX19_03169 at 464.730 kb on + strand at 464.730 kb on + strand at 464.730 kb on + strand at 464.730 kb on + strand at 464.731 kb on - strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.832 kb on + strand at 464.833 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 462,225 + MPMX19_03167 0.76 -2.2 462,225 + MPMX19_03167 0.76 +1.6 462,225 + MPMX19_03167 0.76 -0.8 462,225 + MPMX19_03167 0.76 +0.0 462,225 + MPMX19_03167 0.76 +0.4 462,225 + MPMX19_03167 0.76 -1.6 462,226 - MPMX19_03167 0.76 -0.6 462,226 - MPMX19_03167 0.76 -1.4 462,226 - MPMX19_03167 0.76 +0.3 462,226 - MPMX19_03167 0.76 -0.7 462,226 - MPMX19_03167 0.76 +3.6 462,226 - MPMX19_03167 0.76 -1.7 462,226 - MPMX19_03167 0.76 -0.4 462,226 - MPMX19_03167 0.76 -0.6 462,226 - MPMX19_03167 0.76 -0.4 462,226 - MPMX19_03167 0.76 +0.0 462,226 - MPMX19_03167 0.76 +0.0 462,226 - MPMX19_03167 0.76 -0.2 462,226 - MPMX19_03167 0.76 -0.6 462,226 - MPMX19_03167 0.76 -1.7 462,226 - MPMX19_03167 0.76 -1.2 462,226 - MPMX19_03167 0.76 -0.6 462,226 - MPMX19_03167 0.76 -2.7 462,226 - MPMX19_03167 0.76 -0.2 462,226 - MPMX19_03167 0.76 -1.2 462,459 + MPMX19_03167 0.81 +0.6 462,459 + MPMX19_03167 0.81 -0.8 462,459 + MPMX19_03167 0.81 -0.4 462,459 + MPMX19_03167 0.81 -2.0 462,459 + MPMX19_03167 0.81 -0.5 462,459 + MPMX19_03167 0.81 -0.3 462,459 + MPMX19_03167 0.81 -1.2 462,540 + MPMX19_03167 0.83 -0.7 462,541 - MPMX19_03167 0.83 -0.4 462,541 - MPMX19_03167 0.83 -1.1 462,541 - MPMX19_03167 0.83 -0.1 462,541 - MPMX19_03167 0.83 -1.2 462,541 - MPMX19_03167 0.83 -0.1 462,541 - MPMX19_03167 0.83 +0.5 462,564 + MPMX19_03167 0.84 +1.0 462,564 + MPMX19_03167 0.84 +0.3 462,564 + MPMX19_03167 0.84 -0.8 462,564 + MPMX19_03167 0.84 -2.0 462,564 + MPMX19_03167 0.84 -0.1 462,564 + MPMX19_03167 0.84 -0.4 462,565 - MPMX19_03167 0.84 -2.2 462,565 - MPMX19_03167 0.84 -0.5 462,565 - MPMX19_03167 0.84 +0.0 462,565 - MPMX19_03167 0.84 +0.4 462,565 - MPMX19_03167 0.84 -2.4 462,565 - MPMX19_03167 0.84 -2.0 462,627 + MPMX19_03167 0.85 +0.2 462,627 + MPMX19_03167 0.85 -1.4 462,627 + MPMX19_03167 0.85 -0.8 462,627 + MPMX19_03167 0.85 -0.2 462,627 + MPMX19_03167 0.85 -0.6 462,627 + MPMX19_03167 0.85 +0.0 462,627 + MPMX19_03167 0.85 +2.1 462,627 + MPMX19_03167 0.85 -1.4 462,627 + MPMX19_03167 0.85 -1.5 462,627 + MPMX19_03167 0.85 +0.4 462,627 + MPMX19_03167 0.85 +0.1 462,627 + MPMX19_03167 0.85 +0.8 462,627 + MPMX19_03167 0.85 -1.7 462,627 + MPMX19_03167 0.85 -0.8 462,627 + MPMX19_03167 0.85 -0.6 462,627 + MPMX19_03167 0.85 -1.7 462,627 + MPMX19_03167 0.85 +0.7 462,627 + MPMX19_03167 0.85 -0.7 462,627 + MPMX19_03167 0.85 -2.0 462,627 + MPMX19_03167 0.85 +0.0 462,627 + MPMX19_03167 0.85 +1.6 462,627 + MPMX19_03167 0.85 +2.6 462,627 + MPMX19_03167 0.85 +0.2 462,627 + MPMX19_03167 0.85 -2.0 462,627 + MPMX19_03167 0.85 -0.7 462,628 - MPMX19_03167 0.85 -1.6 462,628 - MPMX19_03167 0.85 -1.6 462,628 - MPMX19_03167 0.85 -1.0 462,628 - MPMX19_03167 0.85 -0.9 462,628 - MPMX19_03167 0.85 -0.7 462,628 - MPMX19_03167 0.85 -0.7 462,628 - MPMX19_03167 0.85 +0.2 462,628 - MPMX19_03167 0.85 +0.3 462,628 - MPMX19_03167 0.85 -0.7 462,628 - MPMX19_03167 0.85 +0.2 462,628 - MPMX19_03167 0.85 -0.2 462,628 - MPMX19_03167 0.85 -2.7 462,628 - MPMX19_03167 0.85 +0.1 462,628 - MPMX19_03167 0.85 -2.0 462,628 - MPMX19_03167 0.85 -0.4 462,628 - MPMX19_03167 0.85 +1.0 462,628 - MPMX19_03167 0.85 -0.9 462,628 - MPMX19_03167 0.85 -0.5 462,628 - MPMX19_03167 0.85 +1.4 462,628 - MPMX19_03167 0.85 +0.8 462,628 - MPMX19_03167 0.85 +1.2 462,628 - MPMX19_03167 0.85 -1.0 462,628 - MPMX19_03167 0.85 -1.0 462,628 - MPMX19_03167 0.85 +0.2 462,628 - MPMX19_03167 0.85 -0.5 462,628 - MPMX19_03167 0.85 -3.7 462,636 + MPMX19_03167 0.86 -0.5 462,637 - MPMX19_03167 0.86 +1.3 462,637 - MPMX19_03167 0.86 +1.2 462,858 + +0.9 462,858 + -0.1 462,858 + -0.6 462,858 + -1.6 462,858 + -0.2 462,859 - -1.0 462,859 - +1.2 462,859 - +0.8 463,005 + -0.1 463,005 + -2.6 463,005 + +1.0 463,005 + -2.1 463,005 + +0.7 463,005 + +0.3 463,005 + -1.4 463,005 + -1.4 463,005 + +0.6 463,005 + -0.1 463,005 + +1.0 463,005 + -0.4 463,005 + -1.1 463,005 + -1.5 463,006 - +1.6 463,006 - +0.1 463,006 - -0.4 463,006 - -1.1 463,006 - +0.7 463,006 - +0.8 463,006 - -0.9 463,006 - -0.2 463,006 - +0.1 463,006 - -0.1 463,006 - -0.2 463,006 - +0.1 463,006 - +1.0 463,006 - -1.2 463,006 - +0.0 463,006 - +0.8 463,006 - -1.4 463,006 - -0.8 463,006 - +0.1 463,006 - -0.7 463,006 - -1.4 463,006 - -0.2 463,006 - -0.3 463,006 - -0.4 463,026 + -1.0 463,026 + -0.7 463,026 + -0.6 463,026 + +1.5 463,026 + -1.1 463,026 + -0.4 463,026 + -1.0 463,026 + -1.5 463,026 + -0.7 463,026 + +0.0 463,026 + +0.3 463,026 + -1.7 463,026 + -0.6 463,027 - +0.7 463,027 - -0.1 463,027 - +0.6 463,027 - +0.1 463,027 - -1.1 463,027 - -1.0 463,287 + -0.7 463,287 + +0.4 463,288 - -2.0 463,288 - +1.6 463,288 - +0.4 463,344 + MPMX19_03168 0.19 +0.3 463,345 - MPMX19_03168 0.19 -0.4 463,345 - MPMX19_03168 0.19 -0.9 463,345 - MPMX19_03168 0.19 +0.8 463,345 - MPMX19_03168 0.19 -0.7 463,479 + MPMX19_03168 0.40 -1.3 463,479 + MPMX19_03168 0.40 -1.3 463,480 - MPMX19_03168 0.40 -0.9 463,480 - MPMX19_03168 0.40 -2.7 463,489 + MPMX19_03168 0.41 -2.1 463,489 + MPMX19_03168 0.41 -1.1 463,490 - MPMX19_03168 0.41 -1.7 463,490 - MPMX19_03168 0.41 -1.1 463,490 - MPMX19_03168 0.41 -1.7 463,490 - MPMX19_03168 0.41 -0.9 463,490 - MPMX19_03168 0.41 +0.6 463,490 - MPMX19_03168 0.41 -1.4 463,545 + MPMX19_03168 0.50 -1.5 463,545 + MPMX19_03168 0.50 -0.6 463,545 + MPMX19_03168 0.50 +0.3 463,545 + MPMX19_03168 0.50 -1.0 463,546 - MPMX19_03168 0.50 -1.4 463,546 - MPMX19_03168 0.50 -1.2 463,546 - MPMX19_03168 0.50 -0.3 463,698 + MPMX19_03168 0.74 -0.4 463,698 + MPMX19_03168 0.74 -1.2 463,698 + MPMX19_03168 0.74 -1.3 463,698 + MPMX19_03168 0.74 -2.0 463,698 + MPMX19_03168 0.74 -0.1 463,698 + MPMX19_03168 0.74 -0.4 463,698 + MPMX19_03168 0.74 -2.3 463,698 + MPMX19_03168 0.74 -1.4 463,699 - MPMX19_03168 0.74 +0.4 463,699 - MPMX19_03168 0.74 +0.7 463,699 - MPMX19_03168 0.74 -0.2 463,699 - MPMX19_03168 0.74 +0.0 463,699 - MPMX19_03168 0.74 -0.5 463,699 - MPMX19_03168 0.74 -0.6 463,699 - MPMX19_03168 0.74 -0.2 463,931 + -0.5 463,931 + -0.7 463,932 - +0.4 463,932 - -0.1 464,439 + MPMX19_03169 0.62 -0.5 464,439 + MPMX19_03169 0.62 -1.2 464,440 - MPMX19_03169 0.62 -0.2 464,440 - MPMX19_03169 0.62 -1.0 464,440 - MPMX19_03169 0.62 +1.0 464,730 + -0.7 464,730 + +0.2 464,730 + +0.1 464,730 + +0.3 464,731 - -1.3 464,809 + -2.4 464,809 + +1.1 464,809 + -0.7 464,809 + +0.2 464,809 + +0.8 464,809 + -0.7 464,809 + -0.3 464,809 + -1.6 464,809 + -0.2 464,809 + -0.1 464,809 + -0.5 464,809 + -1.2 464,809 + -0.0 464,810 - +0.1 464,810 - +0.1 464,810 - -1.6 464,810 - -0.2 464,810 - -0.2 464,810 - -0.5 464,810 - -0.7 464,810 - -1.0 464,810 - -0.7 464,810 - +0.4 464,810 - -0.4 464,810 - -0.4 464,810 - -2.0 464,810 - +0.8 464,832 + -0.4 464,833 - -2.1
Or see this region's nucleotide sequence