Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03142

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03139 and MPMX19_03140 are separated by 150 nucleotidesMPMX19_03140 and MPMX19_03141 are separated by 106 nucleotidesMPMX19_03141 and MPMX19_03142 are separated by 159 nucleotidesMPMX19_03142 and MPMX19_03143 are separated by 425 nucleotidesMPMX19_03143 and MPMX19_03144 are separated by 104 nucleotides MPMX19_03139: MPMX19_03139 - 23S ribosomal RNA, at 427,284 to 430,017 _03139 MPMX19_03140: MPMX19_03140 - 5S ribosomal RNA, at 430,168 to 430,278 _03140 MPMX19_03141: MPMX19_03141 - hypothetical protein, at 430,385 to 430,804 _03141 MPMX19_03142: MPMX19_03142 - Putative thiamine pyrophosphate-containing protein YdaP, at 430,964 to 432,766 _03142 MPMX19_03143: MPMX19_03143 - Polar-differentiation response regulator DivK, at 433,192 to 433,578 _03143 MPMX19_03144: MPMX19_03144 - UDP-N-acetylglucosamine 4-epimerase, at 433,683 to 434,624 _03144 Position (kb) 430 431 432 433Strain fitness (log2 ratio) -3 -2 -1 0 1at 430.383 kb on + strandat 430.758 kb on + strand, within MPMX19_03141at 430.758 kb on + strand, within MPMX19_03141at 430.758 kb on + strand, within MPMX19_03141at 430.759 kb on - strand, within MPMX19_03141at 430.759 kb on - strand, within MPMX19_03141at 430.759 kb on - strand, within MPMX19_03141at 430.759 kb on - strand, within MPMX19_03141at 430.832 kb on - strandat 431.153 kb on + strand, within MPMX19_03142at 431.153 kb on + strand, within MPMX19_03142at 431.153 kb on + strand, within MPMX19_03142at 431.153 kb on + strand, within MPMX19_03142at 431.153 kb on + strand, within MPMX19_03142at 431.153 kb on + strand, within MPMX19_03142at 431.153 kb on + strand, within MPMX19_03142at 431.153 kb on + strand, within MPMX19_03142at 431.153 kb on + strand, within MPMX19_03142at 431.153 kb on + strand, within MPMX19_03142at 431.154 kb on - strand, within MPMX19_03142at 431.154 kb on - strand, within MPMX19_03142at 431.154 kb on - strand, within MPMX19_03142at 431.154 kb on - strand, within MPMX19_03142at 431.154 kb on - strand, within MPMX19_03142at 431.154 kb on - strand, within MPMX19_03142at 431.154 kb on - strand, within MPMX19_03142at 431.154 kb on - strand, within MPMX19_03142at 431.154 kb on - strand, within MPMX19_03142at 431.154 kb on - strand, within MPMX19_03142at 431.154 kb on - strand, within MPMX19_03142at 431.154 kb on - strand, within MPMX19_03142at 431.222 kb on + strand, within MPMX19_03142at 431.222 kb on + strand, within MPMX19_03142at 431.222 kb on + strand, within MPMX19_03142at 431.222 kb on + strand, within MPMX19_03142at 431.222 kb on + strand, within MPMX19_03142at 431.222 kb on + strand, within MPMX19_03142at 431.222 kb on + strand, within MPMX19_03142at 431.222 kb on + strand, within MPMX19_03142at 431.222 kb on + strand, within MPMX19_03142at 431.223 kb on - strand, within MPMX19_03142at 431.223 kb on - strand, within MPMX19_03142at 431.223 kb on - strand, within MPMX19_03142at 431.223 kb on - strand, within MPMX19_03142at 431.223 kb on - strand, within MPMX19_03142at 431.223 kb on - strand, within MPMX19_03142at 431.223 kb on - strand, within MPMX19_03142at 431.223 kb on - strand, within MPMX19_03142at 431.223 kb on - strand, within MPMX19_03142at 431.297 kb on + strand, within MPMX19_03142at 431.297 kb on + strand, within MPMX19_03142at 431.298 kb on - strand, within MPMX19_03142at 431.348 kb on + strand, within MPMX19_03142at 431.348 kb on + strand, within MPMX19_03142at 431.348 kb on + strand, within MPMX19_03142at 431.348 kb on + strand, within MPMX19_03142at 431.349 kb on - strand, within MPMX19_03142at 431.349 kb on - strand, within MPMX19_03142at 431.349 kb on - strand, within MPMX19_03142at 431.349 kb on - strand, within MPMX19_03142at 431.349 kb on - strand, within MPMX19_03142at 431.349 kb on - strand, within MPMX19_03142at 431.349 kb on - strand, within MPMX19_03142at 431.349 kb on - strand, within MPMX19_03142at 431.349 kb on - strand, within MPMX19_03142at 431.765 kb on + strand, within MPMX19_03142at 431.765 kb on + strand, within MPMX19_03142at 431.765 kb on + strand, within MPMX19_03142at 431.766 kb on - strand, within MPMX19_03142at 431.766 kb on - strand, within MPMX19_03142at 431.766 kb on - strand, within MPMX19_03142at 431.766 kb on - strand, within MPMX19_03142at 431.766 kb on - strand, within MPMX19_03142at 432.152 kb on + strand, within MPMX19_03142at 432.152 kb on + strand, within MPMX19_03142at 432.152 kb on + strand, within MPMX19_03142at 432.152 kb on + strand, within MPMX19_03142at 432.153 kb on - strand, within MPMX19_03142at 432.153 kb on - strand, within MPMX19_03142at 432.341 kb on + strand, within MPMX19_03142at 432.341 kb on + strand, within MPMX19_03142at 432.341 kb on + strand, within MPMX19_03142at 432.341 kb on + strand, within MPMX19_03142at 432.342 kb on - strand, within MPMX19_03142at 432.342 kb on - strand, within MPMX19_03142at 432.479 kb on + strand, within MPMX19_03142at 432.596 kb on + strandat 432.596 kb on + strandat 432.596 kb on + strandat 432.596 kb on + strandat 432.596 kb on + strandat 432.596 kb on + strandat 432.597 kb on - strandat 432.734 kb on + strandat 432.734 kb on + strandat 432.734 kb on + strandat 432.734 kb on + strandat 432.734 kb on + strandat 432.734 kb on + strandat 432.734 kb on + strandat 432.734 kb on + strandat 432.734 kb on + strandat 432.734 kb on + strandat 432.734 kb on + strandat 432.735 kb on - strandat 432.735 kb on - strandat 432.735 kb on - strandat 432.735 kb on - strandat 432.735 kb on - strandat 432.735 kb on - strandat 432.735 kb on - strandat 432.735 kb on - strandat 432.735 kb on - strandat 432.735 kb on - strandat 432.809 kb on + strandat 432.809 kb on + strandat 432.809 kb on + strandat 432.809 kb on + strandat 432.809 kb on + strandat 432.809 kb on + strandat 432.809 kb on + strandat 432.809 kb on + strandat 432.809 kb on + strandat 432.809 kb on + strandat 432.810 kb on - strandat 432.810 kb on - strandat 432.810 kb on - strandat 432.810 kb on - strandat 432.919 kb on - strandat 432.919 kb on - strandat 433.024 kb on - strandat 433.031 kb on + strandat 433.067 kb on + strandat 433.401 kb on + strand, within MPMX19_03143at 433.617 kb on + strandat 433.617 kb on + strandat 433.642 kb on + strandat 433.642 kb on + strandat 433.643 kb on - strandat 433.643 kb on - strandat 433.692 kb on + strandat 433.692 kb on + strandat 433.692 kb on + strandat 433.693 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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430,383 + -1.3
430,758 + MPMX19_03141 0.89 -2.2
430,758 + MPMX19_03141 0.89 -0.3
430,758 + MPMX19_03141 0.89 +0.1
430,759 - MPMX19_03141 0.89 -1.7
430,759 - MPMX19_03141 0.89 -1.6
430,759 - MPMX19_03141 0.89 -0.9
430,759 - MPMX19_03141 0.89 -1.6
430,832 - -1.9
431,153 + MPMX19_03142 0.10 -0.5
431,153 + MPMX19_03142 0.10 -0.1
431,153 + MPMX19_03142 0.10 -1.5
431,153 + MPMX19_03142 0.10 -1.0
431,153 + MPMX19_03142 0.10 +0.7
431,153 + MPMX19_03142 0.10 -0.7
431,153 + MPMX19_03142 0.10 -1.7
431,153 + MPMX19_03142 0.10 -0.2
431,153 + MPMX19_03142 0.10 +0.9
431,153 + MPMX19_03142 0.10 +0.4
431,154 - MPMX19_03142 0.11 -1.0
431,154 - MPMX19_03142 0.11 +0.0
431,154 - MPMX19_03142 0.11 -0.9
431,154 - MPMX19_03142 0.11 -0.3
431,154 - MPMX19_03142 0.11 +0.0
431,154 - MPMX19_03142 0.11 +0.6
431,154 - MPMX19_03142 0.11 -2.2
431,154 - MPMX19_03142 0.11 -0.4
431,154 - MPMX19_03142 0.11 +0.3
431,154 - MPMX19_03142 0.11 +1.0
431,154 - MPMX19_03142 0.11 -1.0
431,154 - MPMX19_03142 0.11 -0.9
431,222 + MPMX19_03142 0.14 -0.2
431,222 + MPMX19_03142 0.14 -0.4
431,222 + MPMX19_03142 0.14 -1.4
431,222 + MPMX19_03142 0.14 -0.5
431,222 + MPMX19_03142 0.14 -1.2
431,222 + MPMX19_03142 0.14 -0.8
431,222 + MPMX19_03142 0.14 -1.0
431,222 + MPMX19_03142 0.14 +0.6
431,222 + MPMX19_03142 0.14 +0.6
431,223 - MPMX19_03142 0.14 +0.3
431,223 - MPMX19_03142 0.14 -0.7
431,223 - MPMX19_03142 0.14 -0.1
431,223 - MPMX19_03142 0.14 -1.9
431,223 - MPMX19_03142 0.14 -3.5
431,223 - MPMX19_03142 0.14 -0.3
431,223 - MPMX19_03142 0.14 -1.6
431,223 - MPMX19_03142 0.14 +0.7
431,223 - MPMX19_03142 0.14 -2.0
431,297 + MPMX19_03142 0.18 -1.1
431,297 + MPMX19_03142 0.18 +1.0
431,298 - MPMX19_03142 0.19 -1.5
431,348 + MPMX19_03142 0.21 -0.9
431,348 + MPMX19_03142 0.21 -0.9
431,348 + MPMX19_03142 0.21 -1.1
431,348 + MPMX19_03142 0.21 +0.6
431,349 - MPMX19_03142 0.21 +0.8
431,349 - MPMX19_03142 0.21 -0.6
431,349 - MPMX19_03142 0.21 +0.0
431,349 - MPMX19_03142 0.21 -0.8
431,349 - MPMX19_03142 0.21 -1.2
431,349 - MPMX19_03142 0.21 -1.2
431,349 - MPMX19_03142 0.21 -0.4
431,349 - MPMX19_03142 0.21 +1.0
431,349 - MPMX19_03142 0.21 -1.5
431,765 + MPMX19_03142 0.44 +0.5
431,765 + MPMX19_03142 0.44 -0.9
431,765 + MPMX19_03142 0.44 -1.4
431,766 - MPMX19_03142 0.44 -0.7
431,766 - MPMX19_03142 0.44 -1.4
431,766 - MPMX19_03142 0.44 +0.2
431,766 - MPMX19_03142 0.44 -2.0
431,766 - MPMX19_03142 0.44 -0.7
432,152 + MPMX19_03142 0.66 +0.6
432,152 + MPMX19_03142 0.66 +0.3
432,152 + MPMX19_03142 0.66 -0.4
432,152 + MPMX19_03142 0.66 -1.4
432,153 - MPMX19_03142 0.66 -2.4
432,153 - MPMX19_03142 0.66 +0.7
432,341 + MPMX19_03142 0.76 -1.2
432,341 + MPMX19_03142 0.76 -1.0
432,341 + MPMX19_03142 0.76 -0.2
432,341 + MPMX19_03142 0.76 -1.0
432,342 - MPMX19_03142 0.76 +0.0
432,342 - MPMX19_03142 0.76 -1.6
432,479 + MPMX19_03142 0.84 -0.7
432,596 + -2.3
432,596 + -0.9
432,596 + -2.7
432,596 + -2.6
432,596 + -1.3
432,596 + -0.5
432,597 - -1.5
432,734 + -0.6
432,734 + -0.6
432,734 + -0.6
432,734 + -0.3
432,734 + -0.8
432,734 + +0.0
432,734 + -0.9
432,734 + -0.1
432,734 + -0.7
432,734 + +0.7
432,734 + -1.2
432,735 - -0.4
432,735 - +0.3
432,735 - -0.4
432,735 - -0.8
432,735 - +1.1
432,735 - -0.4
432,735 - +0.4
432,735 - -1.5
432,735 - -0.4
432,735 - -0.7
432,809 + -0.9
432,809 + -1.4
432,809 + +0.6
432,809 + -0.7
432,809 + -0.3
432,809 + -1.1
432,809 + -0.7
432,809 + -0.2
432,809 + -0.3
432,809 + -0.3
432,810 - +0.2
432,810 - -0.4
432,810 - +0.6
432,810 - +0.6
432,919 - -0.8
432,919 - -0.7
433,024 - +1.2
433,031 + -2.7
433,067 + -0.2
433,401 + MPMX19_03143 0.54 +0.9
433,617 + -1.2
433,617 + -1.2
433,642 + -1.1
433,642 + -1.2
433,643 - -1.4
433,643 - -1.4
433,692 + -0.7
433,692 + -0.6
433,692 + +1.3
433,693 - -0.3

Or see this region's nucleotide sequence