Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03124

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03122 and MPMX19_03123 are separated by 59 nucleotidesMPMX19_03123 and MPMX19_03124 overlap by 4 nucleotidesMPMX19_03124 and MPMX19_03125 are separated by 16 nucleotides MPMX19_03122: MPMX19_03122 - [Citrate [pro-3S]-lyase] ligase, at 410,045 to 411,163 _03122 MPMX19_03123: MPMX19_03123 - Citrate lyase acyl carrier protein, at 411,223 to 411,519 _03123 MPMX19_03124: MPMX19_03124 - Citrate lyase subunit beta, at 411,516 to 412,388 _03124 MPMX19_03125: MPMX19_03125 - Citrate lyase alpha chain, at 412,405 to 413,907 _03125 Position (kb) 411 412 413Strain fitness (log2 ratio) -2 -1 0 1 2at 410.547 kb on - strand, within MPMX19_03122at 410.547 kb on - strand, within MPMX19_03122at 410.547 kb on - strand, within MPMX19_03122at 410.547 kb on - strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.729 kb on + strand, within MPMX19_03122at 410.729 kb on + strand, within MPMX19_03122at 410.730 kb on - strand, within MPMX19_03122at 410.730 kb on - strand, within MPMX19_03122at 410.730 kb on - strand, within MPMX19_03122at 410.870 kb on + strand, within MPMX19_03122at 410.870 kb on + strand, within MPMX19_03122at 410.871 kb on - strand, within MPMX19_03122at 410.871 kb on - strand, within MPMX19_03122at 411.068 kb on + strandat 411.068 kb on + strandat 411.068 kb on + strandat 411.068 kb on + strandat 411.068 kb on + strandat 411.068 kb on + strandat 411.068 kb on + strandat 411.068 kb on + strandat 411.068 kb on + strandat 411.068 kb on + strandat 411.069 kb on - strandat 411.069 kb on - strandat 411.069 kb on - strandat 411.069 kb on - strandat 411.069 kb on - strandat 411.284 kb on + strand, within MPMX19_03123at 411.284 kb on + strand, within MPMX19_03123at 411.284 kb on + strand, within MPMX19_03123at 411.285 kb on - strand, within MPMX19_03123at 411.285 kb on - strand, within MPMX19_03123at 411.585 kb on + strandat 411.585 kb on + strandat 411.585 kb on + strandat 411.585 kb on + strandat 411.585 kb on + strandat 411.585 kb on + strandat 411.585 kb on + strandat 411.586 kb on - strandat 411.586 kb on - strandat 411.586 kb on - strandat 411.586 kb on - strandat 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 412.032 kb on + strand, within MPMX19_03124at 412.032 kb on + strand, within MPMX19_03124at 412.032 kb on + strand, within MPMX19_03124at 412.032 kb on + strand, within MPMX19_03124at 412.032 kb on + strand, within MPMX19_03124at 412.033 kb on - strand, within MPMX19_03124at 412.033 kb on - strand, within MPMX19_03124at 412.033 kb on - strand, within MPMX19_03124at 412.033 kb on - strand, within MPMX19_03124at 412.033 kb on - strand, within MPMX19_03124at 412.212 kb on + strand, within MPMX19_03124at 412.212 kb on + strand, within MPMX19_03124at 412.239 kb on + strand, within MPMX19_03124at 412.239 kb on + strand, within MPMX19_03124at 412.239 kb on + strand, within MPMX19_03124at 412.240 kb on - strand, within MPMX19_03124at 412.240 kb on - strand, within MPMX19_03124at 412.240 kb on - strand, within MPMX19_03124at 412.474 kb on + strandat 412.474 kb on + strandat 412.475 kb on - strandat 412.704 kb on + strand, within MPMX19_03125at 412.704 kb on + strand, within MPMX19_03125at 412.732 kb on + strand, within MPMX19_03125at 412.732 kb on + strand, within MPMX19_03125at 412.732 kb on + strand, within MPMX19_03125at 412.732 kb on + strand, within MPMX19_03125at 412.732 kb on + strand, within MPMX19_03125at 412.732 kb on + strand, within MPMX19_03125at 412.732 kb on + strand, within MPMX19_03125at 412.732 kb on + strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.848 kb on + strand, within MPMX19_03125at 412.848 kb on + strand, within MPMX19_03125at 412.848 kb on + strand, within MPMX19_03125at 412.848 kb on + strand, within MPMX19_03125at 412.848 kb on + strand, within MPMX19_03125at 412.848 kb on + strand, within MPMX19_03125at 412.848 kb on + strand, within MPMX19_03125at 412.848 kb on + strand, within MPMX19_03125at 412.849 kb on - strand, within MPMX19_03125at 412.942 kb on + strand, within MPMX19_03125at 412.942 kb on + strand, within MPMX19_03125at 413.047 kb on + strand, within MPMX19_03125at 413.047 kb on + strand, within MPMX19_03125at 413.047 kb on + strand, within MPMX19_03125at 413.047 kb on + strand, within MPMX19_03125at 413.047 kb on + strand, within MPMX19_03125at 413.048 kb on - strand, within MPMX19_03125at 413.048 kb on - strand, within MPMX19_03125at 413.048 kb on - strand, within MPMX19_03125at 413.048 kb on - strand, within MPMX19_03125at 413.048 kb on - strand, within MPMX19_03125at 413.048 kb on - strand, within MPMX19_03125at 413.048 kb on - strand, within MPMX19_03125at 413.048 kb on - strand, within MPMX19_03125at 413.162 kb on + strand, within MPMX19_03125at 413.162 kb on + strand, within MPMX19_03125at 413.162 kb on + strand, within MPMX19_03125at 413.162 kb on + strand, within MPMX19_03125at 413.162 kb on + strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.173 kb on + strand, within MPMX19_03125at 413.174 kb on - strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.249 kb on - strand, within MPMX19_03125at 413.249 kb on - strand, within MPMX19_03125at 413.249 kb on - strand, within MPMX19_03125at 413.249 kb on - strand, within MPMX19_03125at 413.249 kb on - strand, within MPMX19_03125

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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410,547 - MPMX19_03122 0.45 -1.0
410,547 - MPMX19_03122 0.45 -1.3
410,547 - MPMX19_03122 0.45 -1.6
410,547 - MPMX19_03122 0.45 -0.4
410,699 + MPMX19_03122 0.58 +0.0
410,699 + MPMX19_03122 0.58 -1.3
410,699 + MPMX19_03122 0.58 -0.6
410,699 + MPMX19_03122 0.58 -1.4
410,699 + MPMX19_03122 0.58 +0.0
410,699 + MPMX19_03122 0.58 +0.1
410,699 + MPMX19_03122 0.58 -0.4
410,699 + MPMX19_03122 0.58 +0.3
410,699 + MPMX19_03122 0.58 -0.4
410,699 + MPMX19_03122 0.58 -1.7
410,699 + MPMX19_03122 0.58 -0.2
410,699 + MPMX19_03122 0.58 -1.7
410,699 + MPMX19_03122 0.58 +0.1
410,699 + MPMX19_03122 0.58 -2.2
410,699 + MPMX19_03122 0.58 +0.2
410,699 + MPMX19_03122 0.58 -1.0
410,699 + MPMX19_03122 0.58 +0.4
410,699 + MPMX19_03122 0.58 -0.4
410,699 + MPMX19_03122 0.58 -0.2
410,699 + MPMX19_03122 0.58 +0.2
410,699 + MPMX19_03122 0.58 +0.7
410,699 + MPMX19_03122 0.58 +0.1
410,699 + MPMX19_03122 0.58 -1.0
410,699 + MPMX19_03122 0.58 -0.3
410,699 + MPMX19_03122 0.58 -1.4
410,700 - MPMX19_03122 0.59 +0.4
410,700 - MPMX19_03122 0.59 -1.3
410,700 - MPMX19_03122 0.59 -1.7
410,700 - MPMX19_03122 0.59 -0.9
410,700 - MPMX19_03122 0.59 -0.5
410,700 - MPMX19_03122 0.59 +0.2
410,700 - MPMX19_03122 0.59 +0.0
410,700 - MPMX19_03122 0.59 -0.7
410,700 - MPMX19_03122 0.59 +0.7
410,700 - MPMX19_03122 0.59 -1.0
410,700 - MPMX19_03122 0.59 -0.1
410,700 - MPMX19_03122 0.59 +0.8
410,700 - MPMX19_03122 0.59 +0.2
410,700 - MPMX19_03122 0.59 +0.3
410,700 - MPMX19_03122 0.59 -0.3
410,700 - MPMX19_03122 0.59 +0.6
410,700 - MPMX19_03122 0.59 -1.6
410,700 - MPMX19_03122 0.59 +0.9
410,700 - MPMX19_03122 0.59 -1.0
410,700 - MPMX19_03122 0.59 +0.1
410,700 - MPMX19_03122 0.59 +0.1
410,700 - MPMX19_03122 0.59 -0.5
410,700 - MPMX19_03122 0.59 -0.1
410,729 + MPMX19_03122 0.61 -0.1
410,729 + MPMX19_03122 0.61 -1.1
410,730 - MPMX19_03122 0.61 +0.8
410,730 - MPMX19_03122 0.61 -0.4
410,730 - MPMX19_03122 0.61 -0.9
410,870 + MPMX19_03122 0.74 +1.1
410,870 + MPMX19_03122 0.74 +1.2
410,871 - MPMX19_03122 0.74 +0.6
410,871 - MPMX19_03122 0.74 +0.1
411,068 + -0.5
411,068 + +0.6
411,068 + +0.3
411,068 + -0.4
411,068 + -0.8
411,068 + +0.4
411,068 + -0.3
411,068 + +0.9
411,068 + -2.4
411,068 + -1.4
411,069 - -1.0
411,069 - -1.0
411,069 - -0.2
411,069 - -0.5
411,069 - -0.8
411,284 + MPMX19_03123 0.21 -0.9
411,284 + MPMX19_03123 0.21 -0.3
411,284 + MPMX19_03123 0.21 -0.7
411,285 - MPMX19_03123 0.21 -0.1
411,285 - MPMX19_03123 0.21 -0.1
411,585 + -0.7
411,585 + -0.2
411,585 + +0.3
411,585 + -1.0
411,585 + -1.0
411,585 + +1.0
411,585 + -0.5
411,586 - -1.3
411,586 - +0.0
411,586 - +0.1
411,586 - +0.9
411,984 + MPMX19_03124 0.54 -0.3
411,984 + MPMX19_03124 0.54 -0.2
411,984 + MPMX19_03124 0.54 -0.8
411,984 + MPMX19_03124 0.54 -1.0
411,984 + MPMX19_03124 0.54 -0.4
411,984 + MPMX19_03124 0.54 -0.4
411,984 + MPMX19_03124 0.54 -0.9
411,984 + MPMX19_03124 0.54 -0.4
411,984 + MPMX19_03124 0.54 -0.5
411,984 + MPMX19_03124 0.54 -1.1
411,985 - MPMX19_03124 0.54 -0.7
411,985 - MPMX19_03124 0.54 -1.0
411,985 - MPMX19_03124 0.54 -0.1
411,985 - MPMX19_03124 0.54 -1.6
411,985 - MPMX19_03124 0.54 +0.7
411,985 - MPMX19_03124 0.54 +0.4
411,985 - MPMX19_03124 0.54 -0.2
412,032 + MPMX19_03124 0.59 -1.9
412,032 + MPMX19_03124 0.59 -0.7
412,032 + MPMX19_03124 0.59 -1.9
412,032 + MPMX19_03124 0.59 -1.1
412,032 + MPMX19_03124 0.59 -0.0
412,033 - MPMX19_03124 0.59 -0.8
412,033 - MPMX19_03124 0.59 -1.4
412,033 - MPMX19_03124 0.59 +0.6
412,033 - MPMX19_03124 0.59 +0.3
412,033 - MPMX19_03124 0.59 -1.0
412,212 + MPMX19_03124 0.80 +0.1
412,212 + MPMX19_03124 0.80 -0.3
412,239 + MPMX19_03124 0.83 -1.2
412,239 + MPMX19_03124 0.83 -0.6
412,239 + MPMX19_03124 0.83 -0.7
412,240 - MPMX19_03124 0.83 -1.6
412,240 - MPMX19_03124 0.83 +0.3
412,240 - MPMX19_03124 0.83 -0.3
412,474 + -1.0
412,474 + -1.5
412,475 - -1.4
412,704 + MPMX19_03125 0.20 +0.6
412,704 + MPMX19_03125 0.20 -0.7
412,732 + MPMX19_03125 0.22 -0.4
412,732 + MPMX19_03125 0.22 -1.0
412,732 + MPMX19_03125 0.22 -0.9
412,732 + MPMX19_03125 0.22 -0.3
412,732 + MPMX19_03125 0.22 -1.4
412,732 + MPMX19_03125 0.22 -0.4
412,732 + MPMX19_03125 0.22 -0.5
412,732 + MPMX19_03125 0.22 -1.0
412,733 - MPMX19_03125 0.22 +0.7
412,733 - MPMX19_03125 0.22 +0.6
412,733 - MPMX19_03125 0.22 -1.4
412,733 - MPMX19_03125 0.22 -2.2
412,733 - MPMX19_03125 0.22 +0.6
412,733 - MPMX19_03125 0.22 -1.0
412,733 - MPMX19_03125 0.22 -0.1
412,733 - MPMX19_03125 0.22 +0.2
412,733 - MPMX19_03125 0.22 +0.4
412,733 - MPMX19_03125 0.22 -0.1
412,733 - MPMX19_03125 0.22 -0.7
412,733 - MPMX19_03125 0.22 -1.2
412,733 - MPMX19_03125 0.22 +0.2
412,848 + MPMX19_03125 0.29 -2.5
412,848 + MPMX19_03125 0.29 -1.2
412,848 + MPMX19_03125 0.29 -0.5
412,848 + MPMX19_03125 0.29 +0.1
412,848 + MPMX19_03125 0.29 -0.8
412,848 + MPMX19_03125 0.29 -1.3
412,848 + MPMX19_03125 0.29 +0.9
412,848 + MPMX19_03125 0.29 -0.7
412,849 - MPMX19_03125 0.30 -0.3
412,942 + MPMX19_03125 0.36 +1.1
412,942 + MPMX19_03125 0.36 -0.9
413,047 + MPMX19_03125 0.43 +0.2
413,047 + MPMX19_03125 0.43 +0.6
413,047 + MPMX19_03125 0.43 -1.7
413,047 + MPMX19_03125 0.43 +1.4
413,047 + MPMX19_03125 0.43 +0.0
413,048 - MPMX19_03125 0.43 -0.5
413,048 - MPMX19_03125 0.43 -1.3
413,048 - MPMX19_03125 0.43 +0.1
413,048 - MPMX19_03125 0.43 -0.2
413,048 - MPMX19_03125 0.43 -1.5
413,048 - MPMX19_03125 0.43 +0.0
413,048 - MPMX19_03125 0.43 -0.4
413,048 - MPMX19_03125 0.43 +0.8
413,162 + MPMX19_03125 0.50 -1.4
413,162 + MPMX19_03125 0.50 -0.7
413,162 + MPMX19_03125 0.50 -0.6
413,162 + MPMX19_03125 0.50 +0.6
413,162 + MPMX19_03125 0.50 -0.4
413,163 - MPMX19_03125 0.50 -2.1
413,163 - MPMX19_03125 0.50 -0.1
413,163 - MPMX19_03125 0.50 -0.3
413,163 - MPMX19_03125 0.50 -1.0
413,163 - MPMX19_03125 0.50 +0.9
413,163 - MPMX19_03125 0.50 -1.2
413,163 - MPMX19_03125 0.50 -1.2
413,163 - MPMX19_03125 0.50 -0.2
413,163 - MPMX19_03125 0.50 -0.6
413,163 - MPMX19_03125 0.50 -0.1
413,173 + MPMX19_03125 0.51 -1.3
413,174 - MPMX19_03125 0.51 +1.1
413,248 + MPMX19_03125 0.56 -0.7
413,248 + MPMX19_03125 0.56 -1.5
413,248 + MPMX19_03125 0.56 -2.3
413,248 + MPMX19_03125 0.56 -0.2
413,248 + MPMX19_03125 0.56 +0.4
413,248 + MPMX19_03125 0.56 -0.4
413,248 + MPMX19_03125 0.56 -1.2
413,248 + MPMX19_03125 0.56 +0.0
413,248 + MPMX19_03125 0.56 -0.5
413,249 - MPMX19_03125 0.56 +0.9
413,249 - MPMX19_03125 0.56 +2.0
413,249 - MPMX19_03125 0.56 -1.0
413,249 - MPMX19_03125 0.56 +0.8
413,249 - MPMX19_03125 0.56 +0.8

Or see this region's nucleotide sequence