Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03117 and MPMX19_03118 are separated by 206 nucleotides MPMX19_03118 and MPMX19_03119 are separated by 103 nucleotides MPMX19_03119 and MPMX19_03120 overlap by 35 nucleotides
MPMX19_03117: MPMX19_03117 - Catabolite control protein A, at 402,642 to 403,649
_03117
MPMX19_03118: MPMX19_03118 - hypothetical protein, at 403,856 to 404,062
_03118
MPMX19_03119: MPMX19_03119 - Transcriptional regulatory protein QseB, at 404,166 to 404,876
_03119
MPMX19_03120: MPMX19_03120 - Adaptive-response sensory-kinase SasA, at 404,842 to 407,397
_03120
Position (kb) 404
405 Strain fitness (log2 ratio) -2
-1
0
1
2 at 403.294 kb on + strand, within MPMX19_03117 at 403.294 kb on + strand, within MPMX19_03117 at 403.294 kb on + strand, within MPMX19_03117 at 403.295 kb on - strand, within MPMX19_03117 at 403.295 kb on - strand, within MPMX19_03117 at 403.295 kb on - strand, within MPMX19_03117 at 403.295 kb on - strand, within MPMX19_03117 at 403.405 kb on + strand, within MPMX19_03117 at 403.405 kb on + strand, within MPMX19_03117 at 403.406 kb on - strand, within MPMX19_03117 at 403.406 kb on - strand, within MPMX19_03117 at 403.406 kb on - strand, within MPMX19_03117 at 403.406 kb on - strand, within MPMX19_03117 at 403.406 kb on - strand, within MPMX19_03117 at 403.406 kb on - strand, within MPMX19_03117 at 403.406 kb on - strand, within MPMX19_03117 at 403.406 kb on - strand, within MPMX19_03117 at 403.565 kb on + strand at 403.565 kb on + strand at 403.594 kb on - strand at 403.684 kb on + strand at 403.684 kb on + strand at 403.684 kb on + strand at 403.684 kb on + strand at 403.684 kb on + strand at 403.685 kb on - strand at 403.685 kb on - strand at 403.685 kb on - strand at 403.685 kb on - strand at 403.685 kb on - strand at 403.685 kb on - strand at 403.769 kb on + strand at 403.769 kb on + strand at 403.769 kb on + strand at 403.769 kb on + strand at 403.855 kb on + strand at 403.855 kb on + strand at 403.855 kb on + strand at 403.855 kb on + strand at 403.855 kb on + strand at 403.855 kb on + strand at 403.855 kb on + strand at 403.856 kb on - strand at 403.856 kb on - strand at 403.856 kb on - strand at 403.856 kb on - strand at 403.856 kb on - strand at 403.856 kb on - strand at 403.856 kb on - strand at 403.856 kb on - strand at 403.856 kb on - strand at 403.894 kb on - strand, within MPMX19_03118 at 404.162 kb on + strand at 404.162 kb on + strand at 404.163 kb on - strand at 404.163 kb on - strand at 404.163 kb on - strand at 404.163 kb on - strand at 404.173 kb on + strand at 404.173 kb on + strand at 404.173 kb on + strand at 404.173 kb on + strand at 404.174 kb on - strand at 404.174 kb on - strand at 404.174 kb on - strand at 404.174 kb on - strand at 404.174 kb on - strand at 404.174 kb on - strand at 404.174 kb on - strand at 404.174 kb on - strand at 404.174 kb on - strand at 404.238 kb on + strand, within MPMX19_03119 at 404.239 kb on - strand, within MPMX19_03119 at 404.298 kb on + strand, within MPMX19_03119 at 404.298 kb on + strand, within MPMX19_03119 at 404.298 kb on + strand, within MPMX19_03119 at 404.298 kb on + strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.458 kb on - strand, within MPMX19_03119 at 404.458 kb on - strand, within MPMX19_03119 at 404.458 kb on - strand, within MPMX19_03119 at 404.458 kb on - strand, within MPMX19_03119 at 404.458 kb on - strand, within MPMX19_03119 at 404.742 kb on + strand, within MPMX19_03119 at 404.742 kb on + strand, within MPMX19_03119 at 404.742 kb on + strand, within MPMX19_03119 at 404.742 kb on + strand, within MPMX19_03119 at 404.742 kb on + strand, within MPMX19_03119 at 404.742 kb on + strand, within MPMX19_03119 at 404.742 kb on + strand, within MPMX19_03119 at 404.742 kb on + strand, within MPMX19_03119 at 404.742 kb on + strand, within MPMX19_03119 at 404.742 kb on + strand, within MPMX19_03119 at 404.743 kb on - strand, within MPMX19_03119 at 404.743 kb on - strand, within MPMX19_03119 at 404.743 kb on - strand, within MPMX19_03119 at 404.743 kb on - strand, within MPMX19_03119 at 404.811 kb on + strand at 404.811 kb on + strand at 404.811 kb on + strand at 404.811 kb on + strand at 404.811 kb on + strand at 404.811 kb on + strand at 404.811 kb on + strand at 404.811 kb on + strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.910 kb on + strand at 404.910 kb on + strand at 404.910 kb on + strand at 404.910 kb on + strand at 404.911 kb on - strand at 404.911 kb on - strand at 404.911 kb on - strand at 404.911 kb on - strand at 404.911 kb on - strand at 405.001 kb on + strand at 405.001 kb on + strand at 405.001 kb on + strand at 405.001 kb on + strand at 405.001 kb on + strand at 405.001 kb on + strand at 405.001 kb on + strand at 405.001 kb on + strand at 405.001 kb on + strand at 405.002 kb on - strand at 405.086 kb on - strand at 405.133 kb on + strand, within MPMX19_03120 at 405.133 kb on + strand, within MPMX19_03120 at 405.133 kb on + strand, within MPMX19_03120 at 405.133 kb on + strand, within MPMX19_03120 at 405.133 kb on + strand, within MPMX19_03120 at 405.134 kb on - strand, within MPMX19_03120 at 405.134 kb on - strand, within MPMX19_03120 at 405.134 kb on - strand, within MPMX19_03120 at 405.134 kb on - strand, within MPMX19_03120 at 405.134 kb on - strand, within MPMX19_03120 at 405.134 kb on - strand, within MPMX19_03120 at 405.134 kb on - strand, within MPMX19_03120 at 405.134 kb on - strand, within MPMX19_03120 at 405.134 kb on - strand, within MPMX19_03120 at 405.232 kb on + strand, within MPMX19_03120 at 405.232 kb on + strand, within MPMX19_03120 at 405.233 kb on - strand, within MPMX19_03120
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 403,294 + MPMX19_03117 0.65 -0.1 403,294 + MPMX19_03117 0.65 -0.4 403,294 + MPMX19_03117 0.65 -0.5 403,295 - MPMX19_03117 0.65 -0.9 403,295 - MPMX19_03117 0.65 -0.6 403,295 - MPMX19_03117 0.65 +0.3 403,295 - MPMX19_03117 0.65 -1.1 403,405 + MPMX19_03117 0.76 -0.6 403,405 + MPMX19_03117 0.76 -1.2 403,406 - MPMX19_03117 0.76 -0.4 403,406 - MPMX19_03117 0.76 +0.1 403,406 - MPMX19_03117 0.76 -0.5 403,406 - MPMX19_03117 0.76 +0.0 403,406 - MPMX19_03117 0.76 -0.5 403,406 - MPMX19_03117 0.76 -0.4 403,406 - MPMX19_03117 0.76 -1.2 403,406 - MPMX19_03117 0.76 -1.1 403,565 + +1.0 403,565 + +1.0 403,594 - +0.6 403,684 + -0.4 403,684 + -0.4 403,684 + +0.1 403,684 + -0.1 403,684 + -0.6 403,685 - +0.6 403,685 - -1.9 403,685 - -1.3 403,685 - +0.3 403,685 - -0.7 403,685 - -0.6 403,769 + +1.0 403,769 + +0.4 403,769 + -0.2 403,769 + +0.2 403,855 + +0.5 403,855 + -1.2 403,855 + +0.3 403,855 + -0.4 403,855 + -1.6 403,855 + -0.4 403,855 + -1.0 403,856 - -1.7 403,856 - -0.5 403,856 - +0.6 403,856 - -0.6 403,856 - -0.9 403,856 - -0.6 403,856 - +0.3 403,856 - -0.1 403,856 - -0.7 403,894 - MPMX19_03118 0.18 +0.6 404,162 + +0.9 404,162 + -1.4 404,163 - +0.0 404,163 - +0.4 404,163 - +0.2 404,163 - +0.4 404,173 + -0.7 404,173 + -0.6 404,173 + +0.4 404,173 + -1.7 404,174 - -1.7 404,174 - -0.5 404,174 - +0.6 404,174 - +0.2 404,174 - -0.4 404,174 - +0.9 404,174 - +1.0 404,174 - +0.4 404,174 - -0.2 404,238 + MPMX19_03119 0.10 -1.2 404,239 - MPMX19_03119 0.10 -0.9 404,298 + MPMX19_03119 0.19 -0.1 404,298 + MPMX19_03119 0.19 -2.4 404,298 + MPMX19_03119 0.19 +0.5 404,298 + MPMX19_03119 0.19 +0.4 404,299 - MPMX19_03119 0.19 -1.7 404,299 - MPMX19_03119 0.19 +0.0 404,299 - MPMX19_03119 0.19 +0.0 404,299 - MPMX19_03119 0.19 -1.6 404,299 - MPMX19_03119 0.19 -0.1 404,299 - MPMX19_03119 0.19 +1.2 404,299 - MPMX19_03119 0.19 +1.1 404,299 - MPMX19_03119 0.19 +2.4 404,299 - MPMX19_03119 0.19 +0.3 404,457 + MPMX19_03119 0.41 -0.6 404,457 + MPMX19_03119 0.41 +0.2 404,457 + MPMX19_03119 0.41 -0.9 404,457 + MPMX19_03119 0.41 -1.4 404,457 + MPMX19_03119 0.41 +0.4 404,457 + MPMX19_03119 0.41 -0.5 404,457 + MPMX19_03119 0.41 +1.1 404,457 + MPMX19_03119 0.41 -0.6 404,457 + MPMX19_03119 0.41 +0.0 404,457 + MPMX19_03119 0.41 -0.8 404,458 - MPMX19_03119 0.41 +1.2 404,458 - MPMX19_03119 0.41 +0.0 404,458 - MPMX19_03119 0.41 +1.0 404,458 - MPMX19_03119 0.41 -0.8 404,458 - MPMX19_03119 0.41 +0.6 404,742 + MPMX19_03119 0.81 -2.0 404,742 + MPMX19_03119 0.81 -0.7 404,742 + MPMX19_03119 0.81 +0.2 404,742 + MPMX19_03119 0.81 -1.2 404,742 + MPMX19_03119 0.81 +0.5 404,742 + MPMX19_03119 0.81 +0.2 404,742 + MPMX19_03119 0.81 -0.2 404,742 + MPMX19_03119 0.81 -1.6 404,742 + MPMX19_03119 0.81 -0.3 404,742 + MPMX19_03119 0.81 -0.4 404,743 - MPMX19_03119 0.81 +0.0 404,743 - MPMX19_03119 0.81 -0.1 404,743 - MPMX19_03119 0.81 -1.6 404,743 - MPMX19_03119 0.81 -0.8 404,811 + +1.1 404,811 + +0.6 404,811 + +0.6 404,811 + -0.2 404,811 + -0.3 404,811 + +0.1 404,811 + -1.9 404,811 + -0.9 404,812 - -0.7 404,812 - -1.5 404,812 - +0.5 404,812 - -0.2 404,812 - -0.7 404,812 - +0.2 404,812 - +0.8 404,812 - +0.4 404,812 - -1.5 404,812 - -0.3 404,812 - -1.9 404,812 - -0.3 404,812 - -0.4 404,812 - +0.3 404,910 + -1.9 404,910 + +0.0 404,910 + -0.4 404,910 + -1.4 404,911 - +0.9 404,911 - -1.9 404,911 - +1.1 404,911 - -0.9 404,911 - +0.2 405,001 + -0.4 405,001 + +0.1 405,001 + -2.6 405,001 + -0.3 405,001 + -0.4 405,001 + -1.0 405,001 + -0.2 405,001 + -1.2 405,001 + +0.6 405,002 - +1.4 405,086 - +0.2 405,133 + MPMX19_03120 0.11 +1.3 405,133 + MPMX19_03120 0.11 -0.6 405,133 + MPMX19_03120 0.11 -1.0 405,133 + MPMX19_03120 0.11 +0.4 405,133 + MPMX19_03120 0.11 +0.2 405,134 - MPMX19_03120 0.11 -2.2 405,134 - MPMX19_03120 0.11 +0.8 405,134 - MPMX19_03120 0.11 -1.0 405,134 - MPMX19_03120 0.11 +0.8 405,134 - MPMX19_03120 0.11 -0.5 405,134 - MPMX19_03120 0.11 +0.3 405,134 - MPMX19_03120 0.11 -0.0 405,134 - MPMX19_03120 0.11 -0.8 405,134 - MPMX19_03120 0.11 -0.2 405,232 + MPMX19_03120 0.15 -1.3 405,232 + MPMX19_03120 0.15 +0.0 405,233 - MPMX19_03120 0.15 +0.1
Or see this region's nucleotide sequence