Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03113

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03111 and MPMX19_03112 are separated by 39 nucleotidesMPMX19_03112 and MPMX19_03113 are separated by 5 nucleotidesMPMX19_03113 and MPMX19_03114 overlap by 4 nucleotidesMPMX19_03114 and MPMX19_03115 overlap by 23 nucleotides MPMX19_03111: MPMX19_03111 - Putative fatty-acid--CoA ligase FadD21, at 395,978 to 397,651 _03111 MPMX19_03112: MPMX19_03112 - Ribonuclease BN, at 397,691 to 398,431 _03112 MPMX19_03113: MPMX19_03113 - hypothetical protein, at 398,437 to 399,270 _03113 MPMX19_03114: MPMX19_03114 - hypothetical protein, at 399,267 to 400,196 _03114 MPMX19_03115: MPMX19_03115 - hypothetical protein, at 400,174 to 401,337 _03115 Position (kb) 398 399 400Strain fitness (log2 ratio) -2 -1 0 1 2at 397.692 kb on + strandat 397.692 kb on + strandat 397.733 kb on + strandat 397.733 kb on + strandat 397.733 kb on + strandat 397.733 kb on + strandat 397.733 kb on + strandat 397.734 kb on - strandat 397.734 kb on - strandat 397.734 kb on - strandat 397.734 kb on - strandat 397.734 kb on - strandat 397.794 kb on + strand, within MPMX19_03112at 397.794 kb on + strand, within MPMX19_03112at 397.794 kb on + strand, within MPMX19_03112at 397.794 kb on + strand, within MPMX19_03112at 397.794 kb on + strand, within MPMX19_03112at 397.794 kb on + strand, within MPMX19_03112at 397.794 kb on + strand, within MPMX19_03112at 397.794 kb on + strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 398.265 kb on + strand, within MPMX19_03112at 398.265 kb on + strand, within MPMX19_03112at 398.265 kb on + strand, within MPMX19_03112at 398.265 kb on + strand, within MPMX19_03112at 398.266 kb on - strand, within MPMX19_03112at 398.266 kb on - strand, within MPMX19_03112at 398.615 kb on + strand, within MPMX19_03113at 398.615 kb on + strand, within MPMX19_03113at 398.615 kb on + strand, within MPMX19_03113at 398.615 kb on + strand, within MPMX19_03113at 398.615 kb on + strand, within MPMX19_03113at 398.615 kb on + strand, within MPMX19_03113at 398.616 kb on - strand, within MPMX19_03113at 398.616 kb on - strand, within MPMX19_03113at 398.616 kb on - strand, within MPMX19_03113at 398.616 kb on - strand, within MPMX19_03113at 398.616 kb on - strand, within MPMX19_03113at 398.867 kb on + strand, within MPMX19_03113at 398.868 kb on - strand, within MPMX19_03113at 398.868 kb on - strand, within MPMX19_03113at 398.868 kb on - strand, within MPMX19_03113at 398.891 kb on + strand, within MPMX19_03113at 398.891 kb on + strand, within MPMX19_03113at 398.891 kb on + strand, within MPMX19_03113at 398.891 kb on + strand, within MPMX19_03113at 398.891 kb on + strand, within MPMX19_03113at 398.892 kb on - strand, within MPMX19_03113at 399.131 kb on + strand, within MPMX19_03113at 399.131 kb on + strand, within MPMX19_03113at 399.131 kb on + strand, within MPMX19_03113at 399.131 kb on + strand, within MPMX19_03113at 399.132 kb on - strand, within MPMX19_03113at 399.132 kb on - strand, within MPMX19_03113at 399.132 kb on - strand, within MPMX19_03113at 399.232 kb on + strandat 399.232 kb on + strandat 399.232 kb on + strandat 399.232 kb on + strandat 399.233 kb on - strandat 399.233 kb on - strandat 399.304 kb on + strandat 399.304 kb on + strandat 399.304 kb on + strandat 399.305 kb on - strandat 399.305 kb on - strandat 399.305 kb on - strandat 399.334 kb on + strandat 399.335 kb on - strandat 399.335 kb on - strandat 399.335 kb on - strandat 399.335 kb on - strandat 399.335 kb on - strandat 399.367 kb on + strand, within MPMX19_03114at 399.367 kb on + strand, within MPMX19_03114at 399.391 kb on + strand, within MPMX19_03114at 399.392 kb on - strand, within MPMX19_03114at 399.805 kb on + strand, within MPMX19_03114at 399.857 kb on - strand, within MPMX19_03114at 399.940 kb on + strand, within MPMX19_03114at 399.940 kb on + strand, within MPMX19_03114at 399.940 kb on + strand, within MPMX19_03114at 399.941 kb on - strand, within MPMX19_03114at 399.941 kb on - strand, within MPMX19_03114at 400.027 kb on + strand, within MPMX19_03114at 400.028 kb on - strand, within MPMX19_03114at 400.196 kb on + strandat 400.196 kb on + strandat 400.196 kb on + strandat 400.196 kb on + strandat 400.196 kb on + strandat 400.196 kb on + strandat 400.196 kb on + strandat 400.196 kb on + strandat 400.197 kb on - strandat 400.197 kb on - strandat 400.197 kb on - strandat 400.197 kb on - strandat 400.197 kb on - strandat 400.197 kb on - strandat 400.197 kb on - strandat 400.197 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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397,692 + -0.1
397,692 + +0.0
397,733 + -0.4
397,733 + -1.1
397,733 + +0.2
397,733 + -1.1
397,733 + -1.7
397,734 - -0.0
397,734 - -1.2
397,734 - -1.4
397,734 - +0.6
397,734 - -0.1
397,794 + MPMX19_03112 0.14 +0.1
397,794 + MPMX19_03112 0.14 +2.4
397,794 + MPMX19_03112 0.14 +0.0
397,794 + MPMX19_03112 0.14 -0.1
397,794 + MPMX19_03112 0.14 +1.0
397,794 + MPMX19_03112 0.14 -1.6
397,794 + MPMX19_03112 0.14 -0.4
397,794 + MPMX19_03112 0.14 -0.4
397,795 - MPMX19_03112 0.14 +0.7
397,795 - MPMX19_03112 0.14 -0.8
397,795 - MPMX19_03112 0.14 -0.5
397,795 - MPMX19_03112 0.14 -0.1
397,795 - MPMX19_03112 0.14 -1.3
397,795 - MPMX19_03112 0.14 -0.6
397,795 - MPMX19_03112 0.14 -0.2
397,795 - MPMX19_03112 0.14 -0.5
397,795 - MPMX19_03112 0.14 +0.6
398,265 + MPMX19_03112 0.77 -1.9
398,265 + MPMX19_03112 0.77 -1.3
398,265 + MPMX19_03112 0.77 +0.8
398,265 + MPMX19_03112 0.77 -1.2
398,266 - MPMX19_03112 0.78 -1.0
398,266 - MPMX19_03112 0.78 -0.4
398,615 + MPMX19_03113 0.21 +0.7
398,615 + MPMX19_03113 0.21 -0.7
398,615 + MPMX19_03113 0.21 -0.9
398,615 + MPMX19_03113 0.21 +0.2
398,615 + MPMX19_03113 0.21 +0.6
398,615 + MPMX19_03113 0.21 -1.0
398,616 - MPMX19_03113 0.21 +0.9
398,616 - MPMX19_03113 0.21 -0.6
398,616 - MPMX19_03113 0.21 +0.6
398,616 - MPMX19_03113 0.21 +0.6
398,616 - MPMX19_03113 0.21 -0.1
398,867 + MPMX19_03113 0.52 -1.4
398,868 - MPMX19_03113 0.52 +0.9
398,868 - MPMX19_03113 0.52 -0.6
398,868 - MPMX19_03113 0.52 -0.5
398,891 + MPMX19_03113 0.54 +0.4
398,891 + MPMX19_03113 0.54 +1.6
398,891 + MPMX19_03113 0.54 +0.6
398,891 + MPMX19_03113 0.54 -1.4
398,891 + MPMX19_03113 0.54 -1.7
398,892 - MPMX19_03113 0.55 -1.4
399,131 + MPMX19_03113 0.83 -0.1
399,131 + MPMX19_03113 0.83 +0.3
399,131 + MPMX19_03113 0.83 +0.8
399,131 + MPMX19_03113 0.83 +0.5
399,132 - MPMX19_03113 0.83 -1.4
399,132 - MPMX19_03113 0.83 +0.1
399,132 - MPMX19_03113 0.83 -1.3
399,232 + -0.2
399,232 + -0.2
399,232 + -0.5
399,232 + -0.9
399,233 - -1.2
399,233 - -0.1
399,304 + -0.4
399,304 + -1.7
399,304 + +1.6
399,305 - -0.5
399,305 - -0.7
399,305 - +1.2
399,334 + -1.7
399,335 - -0.3
399,335 - -0.5
399,335 - -0.3
399,335 - +0.0
399,335 - -0.5
399,367 + MPMX19_03114 0.11 -0.2
399,367 + MPMX19_03114 0.11 -0.6
399,391 + MPMX19_03114 0.13 -1.0
399,392 - MPMX19_03114 0.13 +0.6
399,805 + MPMX19_03114 0.58 -1.0
399,857 - MPMX19_03114 0.63 +0.0
399,940 + MPMX19_03114 0.72 -0.4
399,940 + MPMX19_03114 0.72 +0.3
399,940 + MPMX19_03114 0.72 -0.6
399,941 - MPMX19_03114 0.72 -1.4
399,941 - MPMX19_03114 0.72 +2.3
400,027 + MPMX19_03114 0.82 -0.3
400,028 - MPMX19_03114 0.82 -1.2
400,196 + +0.0
400,196 + -1.0
400,196 + -0.2
400,196 + -0.2
400,196 + +1.3
400,196 + +1.3
400,196 + +0.0
400,196 + -0.7
400,197 - -0.3
400,197 - -0.5
400,197 - +1.8
400,197 - +0.8
400,197 - -0.1
400,197 - -0.8
400,197 - -0.3
400,197 - -0.5

Or see this region's nucleotide sequence