Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03075

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03074 and MPMX19_03075 are separated by 91 nucleotidesMPMX19_03075 and MPMX19_03076 overlap by 4 nucleotides MPMX19_03074: MPMX19_03074 - Vitamin B12 transporter BtuB, at 338,739 to 340,796 _03074 MPMX19_03075: MPMX19_03075 - hypothetical protein, at 340,888 to 342,252 _03075 MPMX19_03076: MPMX19_03076 - hypothetical protein, at 342,249 to 343,586 _03076 Position (kb) 340 341 342 343Strain fitness (log2 ratio) -2 -1 0 1 2at 340.050 kb on + strand, within MPMX19_03074at 340.050 kb on + strand, within MPMX19_03074at 340.051 kb on - strand, within MPMX19_03074at 340.051 kb on - strand, within MPMX19_03074at 340.098 kb on + strand, within MPMX19_03074at 340.099 kb on - strand, within MPMX19_03074at 340.099 kb on - strand, within MPMX19_03074at 340.099 kb on - strand, within MPMX19_03074at 340.236 kb on + strand, within MPMX19_03074at 340.236 kb on + strand, within MPMX19_03074at 340.236 kb on + strand, within MPMX19_03074at 340.236 kb on + strand, within MPMX19_03074at 340.236 kb on + strand, within MPMX19_03074at 340.237 kb on - strand, within MPMX19_03074at 340.237 kb on - strand, within MPMX19_03074at 340.237 kb on - strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.447 kb on - strand, within MPMX19_03074at 340.447 kb on - strand, within MPMX19_03074at 340.447 kb on - strand, within MPMX19_03074at 340.447 kb on - strand, within MPMX19_03074at 340.447 kb on - strand, within MPMX19_03074at 340.641 kb on + strandat 340.641 kb on + strandat 340.641 kb on + strandat 340.642 kb on - strandat 340.668 kb on + strandat 340.668 kb on + strandat 340.668 kb on + strandat 340.669 kb on - strandat 340.669 kb on - strandat 340.728 kb on + strandat 340.728 kb on + strandat 340.728 kb on + strandat 340.728 kb on + strandat 340.728 kb on + strandat 340.729 kb on - strandat 340.729 kb on - strandat 340.729 kb on - strandat 340.729 kb on - strandat 340.729 kb on - strandat 340.729 kb on - strandat 340.812 kb on + strandat 340.812 kb on + strandat 340.812 kb on + strandat 340.813 kb on - strandat 340.813 kb on - strandat 340.849 kb on + strandat 340.851 kb on + strandat 340.863 kb on + strandat 340.865 kb on + strandat 340.889 kb on + strandat 340.890 kb on - strandat 341.027 kb on + strand, within MPMX19_03075at 341.027 kb on + strand, within MPMX19_03075at 341.028 kb on - strand, within MPMX19_03075at 341.028 kb on - strand, within MPMX19_03075at 341.028 kb on - strand, within MPMX19_03075at 341.028 kb on - strand, within MPMX19_03075at 341.028 kb on - strand, within MPMX19_03075at 341.028 kb on - strand, within MPMX19_03075at 341.164 kb on - strand, within MPMX19_03075at 341.333 kb on + strand, within MPMX19_03075at 341.333 kb on + strand, within MPMX19_03075at 341.333 kb on + strand, within MPMX19_03075at 341.333 kb on + strand, within MPMX19_03075at 341.334 kb on - strand, within MPMX19_03075at 341.334 kb on - strand, within MPMX19_03075at 341.334 kb on - strand, within MPMX19_03075at 341.334 kb on - strand, within MPMX19_03075at 341.388 kb on + strand, within MPMX19_03075at 341.389 kb on - strand, within MPMX19_03075at 341.873 kb on + strand, within MPMX19_03075at 341.873 kb on + strand, within MPMX19_03075at 341.873 kb on + strand, within MPMX19_03075at 341.873 kb on + strand, within MPMX19_03075at 341.874 kb on - strand, within MPMX19_03075at 341.874 kb on - strand, within MPMX19_03075at 342.494 kb on + strand, within MPMX19_03076at 342.494 kb on + strand, within MPMX19_03076at 342.495 kb on - strand, within MPMX19_03076at 342.495 kb on - strand, within MPMX19_03076at 342.625 kb on + strand, within MPMX19_03076at 342.625 kb on + strand, within MPMX19_03076at 342.625 kb on + strand, within MPMX19_03076at 342.626 kb on - strand, within MPMX19_03076at 342.631 kb on + strand, within MPMX19_03076at 342.631 kb on + strand, within MPMX19_03076at 342.631 kb on + strand, within MPMX19_03076at 342.631 kb on + strand, within MPMX19_03076at 342.631 kb on + strand, within MPMX19_03076at 342.632 kb on - strand, within MPMX19_03076at 342.632 kb on - strand, within MPMX19_03076at 342.632 kb on - strand, within MPMX19_03076at 342.632 kb on - strand, within MPMX19_03076at 342.688 kb on + strand, within MPMX19_03076at 342.688 kb on + strand, within MPMX19_03076at 342.688 kb on + strand, within MPMX19_03076at 342.688 kb on + strand, within MPMX19_03076at 342.688 kb on + strand, within MPMX19_03076at 342.688 kb on + strand, within MPMX19_03076at 342.689 kb on - strand, within MPMX19_03076at 342.689 kb on - strand, within MPMX19_03076at 342.689 kb on - strand, within MPMX19_03076at 342.689 kb on - strand, within MPMX19_03076at 342.689 kb on - strand, within MPMX19_03076at 343.045 kb on + strand, within MPMX19_03076at 343.045 kb on + strand, within MPMX19_03076at 343.045 kb on + strand, within MPMX19_03076at 343.046 kb on - strand, within MPMX19_03076

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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340,050 + MPMX19_03074 0.64 -0.7
340,050 + MPMX19_03074 0.64 -1.1
340,051 - MPMX19_03074 0.64 -0.5
340,051 - MPMX19_03074 0.64 -0.3
340,098 + MPMX19_03074 0.66 -0.5
340,099 - MPMX19_03074 0.66 -0.4
340,099 - MPMX19_03074 0.66 +0.5
340,099 - MPMX19_03074 0.66 -2.5
340,236 + MPMX19_03074 0.73 +0.4
340,236 + MPMX19_03074 0.73 -1.3
340,236 + MPMX19_03074 0.73 -0.9
340,236 + MPMX19_03074 0.73 -0.4
340,236 + MPMX19_03074 0.73 +0.8
340,237 - MPMX19_03074 0.73 +0.6
340,237 - MPMX19_03074 0.73 -0.9
340,237 - MPMX19_03074 0.73 +0.2
340,446 + MPMX19_03074 0.83 +0.1
340,446 + MPMX19_03074 0.83 -1.1
340,446 + MPMX19_03074 0.83 -0.4
340,446 + MPMX19_03074 0.83 -1.4
340,446 + MPMX19_03074 0.83 +1.0
340,446 + MPMX19_03074 0.83 -2.3
340,446 + MPMX19_03074 0.83 -0.4
340,446 + MPMX19_03074 0.83 -0.8
340,446 + MPMX19_03074 0.83 -0.9
340,446 + MPMX19_03074 0.83 +0.5
340,446 + MPMX19_03074 0.83 -0.5
340,446 + MPMX19_03074 0.83 -0.2
340,446 + MPMX19_03074 0.83 +0.6
340,446 + MPMX19_03074 0.83 -0.4
340,446 + MPMX19_03074 0.83 -1.2
340,447 - MPMX19_03074 0.83 -2.3
340,447 - MPMX19_03074 0.83 -0.4
340,447 - MPMX19_03074 0.83 -1.3
340,447 - MPMX19_03074 0.83 -0.9
340,447 - MPMX19_03074 0.83 -0.4
340,641 + +0.1
340,641 + -0.7
340,641 + -1.2
340,642 - +0.5
340,668 + +1.1
340,668 + +0.4
340,668 + +0.1
340,669 - -0.6
340,669 - -0.2
340,728 + -0.9
340,728 + +0.3
340,728 + +0.3
340,728 + +0.9
340,728 + +0.2
340,729 - -0.5
340,729 - -1.2
340,729 - -1.2
340,729 - +1.3
340,729 - -0.3
340,729 - -1.0
340,812 + -0.5
340,812 + -0.5
340,812 + -2.1
340,813 - +1.2
340,813 - -0.4
340,849 + +1.4
340,851 + +0.5
340,863 + -0.7
340,865 + -0.7
340,889 + -0.4
340,890 - -2.3
341,027 + MPMX19_03075 0.10 +1.2
341,027 + MPMX19_03075 0.10 +0.9
341,028 - MPMX19_03075 0.10 -1.4
341,028 - MPMX19_03075 0.10 +0.1
341,028 - MPMX19_03075 0.10 +0.8
341,028 - MPMX19_03075 0.10 +0.0
341,028 - MPMX19_03075 0.10 +0.5
341,028 - MPMX19_03075 0.10 -0.0
341,164 - MPMX19_03075 0.20 +1.2
341,333 + MPMX19_03075 0.33 +0.8
341,333 + MPMX19_03075 0.33 -0.2
341,333 + MPMX19_03075 0.33 -0.7
341,333 + MPMX19_03075 0.33 +1.4
341,334 - MPMX19_03075 0.33 +0.8
341,334 - MPMX19_03075 0.33 -0.4
341,334 - MPMX19_03075 0.33 -0.8
341,334 - MPMX19_03075 0.33 +0.8
341,388 + MPMX19_03075 0.37 +1.2
341,389 - MPMX19_03075 0.37 -0.4
341,873 + MPMX19_03075 0.72 -1.0
341,873 + MPMX19_03075 0.72 -0.4
341,873 + MPMX19_03075 0.72 -0.4
341,873 + MPMX19_03075 0.72 +0.3
341,874 - MPMX19_03075 0.72 -0.2
341,874 - MPMX19_03075 0.72 -1.5
342,494 + MPMX19_03076 0.18 -0.8
342,494 + MPMX19_03076 0.18 +1.1
342,495 - MPMX19_03076 0.18 +2.1
342,495 - MPMX19_03076 0.18 +1.1
342,625 + MPMX19_03076 0.28 -1.8
342,625 + MPMX19_03076 0.28 -0.9
342,625 + MPMX19_03076 0.28 -0.9
342,626 - MPMX19_03076 0.28 -0.3
342,631 + MPMX19_03076 0.29 -0.4
342,631 + MPMX19_03076 0.29 +0.2
342,631 + MPMX19_03076 0.29 +0.8
342,631 + MPMX19_03076 0.29 +0.9
342,631 + MPMX19_03076 0.29 -0.7
342,632 - MPMX19_03076 0.29 -0.4
342,632 - MPMX19_03076 0.29 -1.2
342,632 - MPMX19_03076 0.29 +0.9
342,632 - MPMX19_03076 0.29 -1.0
342,688 + MPMX19_03076 0.33 -1.4
342,688 + MPMX19_03076 0.33 +0.3
342,688 + MPMX19_03076 0.33 -0.1
342,688 + MPMX19_03076 0.33 -0.7
342,688 + MPMX19_03076 0.33 +0.2
342,688 + MPMX19_03076 0.33 -1.4
342,689 - MPMX19_03076 0.33 -1.5
342,689 - MPMX19_03076 0.33 -1.7
342,689 - MPMX19_03076 0.33 +0.1
342,689 - MPMX19_03076 0.33 -0.5
342,689 - MPMX19_03076 0.33 -0.4
343,045 + MPMX19_03076 0.59 -0.1
343,045 + MPMX19_03076 0.59 -0.2
343,045 + MPMX19_03076 0.59 -1.1
343,046 - MPMX19_03076 0.60 +0.2

Or see this region's nucleotide sequence