Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03072

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03071 and MPMX19_03072 are separated by 61 nucleotidesMPMX19_03072 and MPMX19_03073 are separated by 39 nucleotidesMPMX19_03073 and MPMX19_03074 are separated by 154 nucleotides MPMX19_03071: MPMX19_03071 - HTH-type transcriptional regulatory protein GabR, at 336,211 to 337,701 _03071 MPMX19_03072: MPMX19_03072 - hypothetical protein, at 337,763 to 337,870 _03072 MPMX19_03073: MPMX19_03073 - hypothetical protein, at 337,910 to 338,584 _03073 MPMX19_03074: MPMX19_03074 - Vitamin B12 transporter BtuB, at 338,739 to 340,796 _03074 Position (kb) 337 338Strain fitness (log2 ratio) -2 -1 0 1 2at 336.895 kb on + strand, within MPMX19_03071at 336.896 kb on - strand, within MPMX19_03071at 336.896 kb on - strand, within MPMX19_03071at 336.896 kb on - strand, within MPMX19_03071at 336.896 kb on - strand, within MPMX19_03071at 336.898 kb on + strand, within MPMX19_03071at 336.898 kb on + strand, within MPMX19_03071at 336.898 kb on + strand, within MPMX19_03071at 336.899 kb on - strand, within MPMX19_03071at 336.899 kb on - strand, within MPMX19_03071at 336.899 kb on - strand, within MPMX19_03071at 336.899 kb on - strand, within MPMX19_03071at 336.983 kb on + strand, within MPMX19_03071at 336.983 kb on + strand, within MPMX19_03071at 337.126 kb on + strand, within MPMX19_03071at 337.126 kb on + strand, within MPMX19_03071at 337.126 kb on + strand, within MPMX19_03071at 337.127 kb on - strand, within MPMX19_03071at 337.127 kb on - strand, within MPMX19_03071at 337.127 kb on - strand, within MPMX19_03071at 337.201 kb on + strand, within MPMX19_03071at 337.201 kb on + strand, within MPMX19_03071at 337.201 kb on + strand, within MPMX19_03071at 337.201 kb on + strand, within MPMX19_03071at 337.201 kb on + strand, within MPMX19_03071at 337.201 kb on + strand, within MPMX19_03071at 337.202 kb on - strand, within MPMX19_03071at 337.202 kb on - strand, within MPMX19_03071at 337.202 kb on - strand, within MPMX19_03071at 337.202 kb on - strand, within MPMX19_03071at 337.202 kb on - strand, within MPMX19_03071at 337.202 kb on - strand, within MPMX19_03071at 337.202 kb on - strand, within MPMX19_03071at 337.249 kb on + strand, within MPMX19_03071at 337.249 kb on + strand, within MPMX19_03071at 337.249 kb on + strand, within MPMX19_03071at 337.249 kb on + strand, within MPMX19_03071at 337.250 kb on - strand, within MPMX19_03071at 337.250 kb on - strand, within MPMX19_03071at 337.250 kb on - strand, within MPMX19_03071at 337.274 kb on + strand, within MPMX19_03071at 337.275 kb on - strand, within MPMX19_03071at 337.375 kb on + strand, within MPMX19_03071at 337.375 kb on + strand, within MPMX19_03071at 337.375 kb on + strand, within MPMX19_03071at 337.375 kb on + strand, within MPMX19_03071at 337.376 kb on + strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.399 kb on + strand, within MPMX19_03071at 337.399 kb on + strand, within MPMX19_03071at 337.399 kb on + strand, within MPMX19_03071at 337.399 kb on + strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.525 kb on - strand, within MPMX19_03071at 337.525 kb on - strand, within MPMX19_03071at 337.582 kb on + strandat 337.582 kb on + strandat 337.583 kb on - strandat 337.630 kb on + strandat 337.630 kb on + strandat 337.630 kb on + strandat 337.631 kb on - strandat 337.631 kb on - strandat 337.700 kb on - strandat 337.714 kb on + strandat 337.715 kb on - strandat 337.715 kb on - strandat 337.715 kb on - strandat 337.771 kb on + strandat 337.772 kb on - strandat 337.772 kb on - strandat 337.772 kb on - strandat 337.777 kb on + strand, within MPMX19_03072at 337.777 kb on + strand, within MPMX19_03072at 337.778 kb on - strand, within MPMX19_03072at 337.868 kb on + strandat 337.868 kb on + strandat 337.868 kb on + strandat 337.868 kb on + strandat 337.868 kb on + strandat 337.869 kb on - strandat 337.869 kb on - strandat 337.869 kb on - strandat 337.879 kb on + strandat 337.879 kb on + strandat 337.928 kb on + strandat 337.928 kb on + strandat 337.928 kb on + strandat 337.928 kb on + strandat 337.928 kb on + strandat 337.929 kb on - strandat 337.929 kb on - strandat 337.972 kb on + strandat 338.027 kb on + strand, within MPMX19_03073at 338.027 kb on + strand, within MPMX19_03073at 338.465 kb on + strand, within MPMX19_03073at 338.465 kb on + strand, within MPMX19_03073at 338.465 kb on + strand, within MPMX19_03073at 338.466 kb on - strand, within MPMX19_03073at 338.466 kb on - strand, within MPMX19_03073at 338.466 kb on - strand, within MPMX19_03073at 338.723 kb on + strandat 338.763 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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336,895 + MPMX19_03071 0.46 -0.0
336,896 - MPMX19_03071 0.46 -0.9
336,896 - MPMX19_03071 0.46 -0.4
336,896 - MPMX19_03071 0.46 +0.3
336,896 - MPMX19_03071 0.46 +0.2
336,898 + MPMX19_03071 0.46 +0.9
336,898 + MPMX19_03071 0.46 -1.4
336,898 + MPMX19_03071 0.46 -0.4
336,899 - MPMX19_03071 0.46 -0.9
336,899 - MPMX19_03071 0.46 -0.4
336,899 - MPMX19_03071 0.46 +0.4
336,899 - MPMX19_03071 0.46 -0.2
336,983 + MPMX19_03071 0.52 -2.3
336,983 + MPMX19_03071 0.52 -1.7
337,126 + MPMX19_03071 0.61 -0.9
337,126 + MPMX19_03071 0.61 +0.8
337,126 + MPMX19_03071 0.61 -0.5
337,127 - MPMX19_03071 0.61 -1.4
337,127 - MPMX19_03071 0.61 -0.4
337,127 - MPMX19_03071 0.61 -1.7
337,201 + MPMX19_03071 0.66 -1.8
337,201 + MPMX19_03071 0.66 +1.1
337,201 + MPMX19_03071 0.66 -0.7
337,201 + MPMX19_03071 0.66 -1.8
337,201 + MPMX19_03071 0.66 -0.3
337,201 + MPMX19_03071 0.66 +0.1
337,202 - MPMX19_03071 0.66 -2.1
337,202 - MPMX19_03071 0.66 -1.1
337,202 - MPMX19_03071 0.66 +1.1
337,202 - MPMX19_03071 0.66 -0.2
337,202 - MPMX19_03071 0.66 -1.1
337,202 - MPMX19_03071 0.66 +0.7
337,202 - MPMX19_03071 0.66 +0.6
337,249 + MPMX19_03071 0.70 +0.2
337,249 + MPMX19_03071 0.70 -0.5
337,249 + MPMX19_03071 0.70 -1.5
337,249 + MPMX19_03071 0.70 -0.5
337,250 - MPMX19_03071 0.70 -1.7
337,250 - MPMX19_03071 0.70 -0.7
337,250 - MPMX19_03071 0.70 -0.7
337,274 + MPMX19_03071 0.71 -1.4
337,275 - MPMX19_03071 0.71 -0.4
337,375 + MPMX19_03071 0.78 +0.6
337,375 + MPMX19_03071 0.78 +0.3
337,375 + MPMX19_03071 0.78 +0.1
337,375 + MPMX19_03071 0.78 -1.8
337,376 + MPMX19_03071 0.78 +0.1
337,376 - MPMX19_03071 0.78 -0.7
337,376 - MPMX19_03071 0.78 -0.9
337,376 - MPMX19_03071 0.78 +0.1
337,376 - MPMX19_03071 0.78 -0.9
337,376 - MPMX19_03071 0.78 +0.6
337,376 - MPMX19_03071 0.78 +0.6
337,376 - MPMX19_03071 0.78 -0.9
337,376 - MPMX19_03071 0.78 -0.1
337,376 - MPMX19_03071 0.78 -1.2
337,399 + MPMX19_03071 0.80 +0.1
337,399 + MPMX19_03071 0.80 +1.3
337,399 + MPMX19_03071 0.80 +0.8
337,399 + MPMX19_03071 0.80 -0.6
337,400 - MPMX19_03071 0.80 -1.4
337,400 - MPMX19_03071 0.80 -0.9
337,400 - MPMX19_03071 0.80 +0.0
337,400 - MPMX19_03071 0.80 -1.2
337,400 - MPMX19_03071 0.80 +0.6
337,400 - MPMX19_03071 0.80 -0.4
337,400 - MPMX19_03071 0.80 +0.9
337,400 - MPMX19_03071 0.80 -1.4
337,400 - MPMX19_03071 0.80 +2.4
337,400 - MPMX19_03071 0.80 -2.0
337,525 - MPMX19_03071 0.88 -0.5
337,525 - MPMX19_03071 0.88 +2.0
337,582 + +0.3
337,582 + +0.3
337,583 - +1.0
337,630 + -0.2
337,630 + -0.3
337,630 + -0.4
337,631 - -1.0
337,631 - -1.4
337,700 - +0.1
337,714 + -0.4
337,715 - -1.1
337,715 - -0.9
337,715 - -0.6
337,771 + -0.5
337,772 - -0.2
337,772 - -1.1
337,772 - -1.5
337,777 + MPMX19_03072 0.13 -0.4
337,777 + MPMX19_03072 0.13 -1.2
337,778 - MPMX19_03072 0.14 -1.3
337,868 + -0.2
337,868 + -1.4
337,868 + +0.1
337,868 + -1.3
337,868 + -1.4
337,869 - +0.4
337,869 - -1.4
337,869 - +0.1
337,879 + -1.2
337,879 + +0.8
337,928 + -0.0
337,928 + -0.4
337,928 + -1.5
337,928 + -2.2
337,928 + -1.7
337,929 - +0.4
337,929 - +1.1
337,972 + -0.3
338,027 + MPMX19_03073 0.17 -0.4
338,027 + MPMX19_03073 0.17 -0.0
338,465 + MPMX19_03073 0.82 +0.2
338,465 + MPMX19_03073 0.82 +0.3
338,465 + MPMX19_03073 0.82 +0.4
338,466 - MPMX19_03073 0.82 -0.3
338,466 - MPMX19_03073 0.82 -0.9
338,466 - MPMX19_03073 0.82 -1.1
338,723 + -0.1
338,763 - -1.6

Or see this region's nucleotide sequence