Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03067

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03066 and MPMX19_03067 are separated by 192 nucleotidesMPMX19_03067 and MPMX19_03068 overlap by 4 nucleotidesMPMX19_03068 and MPMX19_03069 are separated by 2 nucleotides MPMX19_03066: MPMX19_03066 - hypothetical protein, at 330,837 to 331,850 _03066 MPMX19_03067: MPMX19_03067 - hypothetical protein, at 332,043 to 333,314 _03067 MPMX19_03068: MPMX19_03068 - hypothetical protein, at 333,311 to 334,153 _03068 MPMX19_03069: MPMX19_03069 - hypothetical protein, at 334,156 to 334,749 _03069 Position (kb) 332 333 334Strain fitness (log2 ratio) -2 -1 0 1at 331.924 kb on - strandat 332.004 kb on - strandat 332.372 kb on + strand, within MPMX19_03067at 332.466 kb on + strand, within MPMX19_03067at 332.466 kb on + strand, within MPMX19_03067at 332.466 kb on + strand, within MPMX19_03067at 332.467 kb on - strand, within MPMX19_03067at 333.018 kb on + strand, within MPMX19_03067at 333.018 kb on + strand, within MPMX19_03067at 333.018 kb on + strand, within MPMX19_03067at 333.018 kb on + strand, within MPMX19_03067at 333.018 kb on + strand, within MPMX19_03067at 333.018 kb on + strand, within MPMX19_03067at 333.019 kb on - strand, within MPMX19_03067at 333.019 kb on - strand, within MPMX19_03067at 333.019 kb on - strand, within MPMX19_03067at 333.019 kb on - strand, within MPMX19_03067at 333.019 kb on - strand, within MPMX19_03067at 333.019 kb on - strand, within MPMX19_03067at 333.019 kb on - strand, within MPMX19_03067at 333.316 kb on - strandat 333.316 kb on - strandat 333.316 kb on - strandat 333.419 kb on + strand, within MPMX19_03068at 333.419 kb on + strand, within MPMX19_03068at 333.420 kb on - strand, within MPMX19_03068at 333.420 kb on - strand, within MPMX19_03068at 333.467 kb on + strand, within MPMX19_03068at 333.467 kb on + strand, within MPMX19_03068at 333.467 kb on + strand, within MPMX19_03068at 333.468 kb on - strand, within MPMX19_03068at 333.761 kb on + strand, within MPMX19_03068at 333.761 kb on + strand, within MPMX19_03068at 333.761 kb on + strand, within MPMX19_03068at 333.761 kb on + strand, within MPMX19_03068at 333.761 kb on + strand, within MPMX19_03068at 333.761 kb on + strand, within MPMX19_03068at 333.761 kb on + strand, within MPMX19_03068at 333.762 kb on - strand, within MPMX19_03068at 333.762 kb on - strand, within MPMX19_03068at 333.762 kb on - strand, within MPMX19_03068at 333.929 kb on + strand, within MPMX19_03068at 333.929 kb on + strand, within MPMX19_03068at 333.929 kb on + strand, within MPMX19_03068at 333.930 kb on - strand, within MPMX19_03068at 333.998 kb on + strand, within MPMX19_03068at 333.998 kb on + strand, within MPMX19_03068at 333.999 kb on - strand, within MPMX19_03068at 334.016 kb on + strand, within MPMX19_03068at 334.017 kb on - strand, within MPMX19_03068at 334.017 kb on - strand, within MPMX19_03068at 334.017 kb on - strand, within MPMX19_03068at 334.249 kb on + strand, within MPMX19_03069at 334.249 kb on + strand, within MPMX19_03069at 334.249 kb on + strand, within MPMX19_03069at 334.249 kb on + strand, within MPMX19_03069at 334.250 kb on - strand, within MPMX19_03069

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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331,924 - +1.2
332,004 - -1.5
332,372 + MPMX19_03067 0.26 +0.6
332,466 + MPMX19_03067 0.33 -0.4
332,466 + MPMX19_03067 0.33 +0.2
332,466 + MPMX19_03067 0.33 -2.1
332,467 - MPMX19_03067 0.33 -0.5
333,018 + MPMX19_03067 0.77 -0.1
333,018 + MPMX19_03067 0.77 -0.8
333,018 + MPMX19_03067 0.77 -1.5
333,018 + MPMX19_03067 0.77 -0.7
333,018 + MPMX19_03067 0.77 +0.9
333,018 + MPMX19_03067 0.77 -1.1
333,019 - MPMX19_03067 0.77 -0.7
333,019 - MPMX19_03067 0.77 -1.8
333,019 - MPMX19_03067 0.77 -1.0
333,019 - MPMX19_03067 0.77 -0.1
333,019 - MPMX19_03067 0.77 -0.3
333,019 - MPMX19_03067 0.77 -0.2
333,019 - MPMX19_03067 0.77 -0.6
333,316 - -0.7
333,316 - +0.3
333,316 - -1.2
333,419 + MPMX19_03068 0.13 +0.7
333,419 + MPMX19_03068 0.13 -0.2
333,420 - MPMX19_03068 0.13 -0.9
333,420 - MPMX19_03068 0.13 -0.4
333,467 + MPMX19_03068 0.19 -0.4
333,467 + MPMX19_03068 0.19 -0.5
333,467 + MPMX19_03068 0.19 +0.3
333,468 - MPMX19_03068 0.19 -0.6
333,761 + MPMX19_03068 0.53 +0.1
333,761 + MPMX19_03068 0.53 -1.0
333,761 + MPMX19_03068 0.53 +0.1
333,761 + MPMX19_03068 0.53 -0.4
333,761 + MPMX19_03068 0.53 -0.4
333,761 + MPMX19_03068 0.53 -1.8
333,761 + MPMX19_03068 0.53 -0.6
333,762 - MPMX19_03068 0.53 +0.9
333,762 - MPMX19_03068 0.53 +0.7
333,762 - MPMX19_03068 0.53 -0.7
333,929 + MPMX19_03068 0.73 +0.8
333,929 + MPMX19_03068 0.73 +0.1
333,929 + MPMX19_03068 0.73 -0.4
333,930 - MPMX19_03068 0.73 -0.2
333,998 + MPMX19_03068 0.81 -0.3
333,998 + MPMX19_03068 0.81 +0.3
333,999 - MPMX19_03068 0.82 +0.1
334,016 + MPMX19_03068 0.84 -0.9
334,017 - MPMX19_03068 0.84 -1.5
334,017 - MPMX19_03068 0.84 +0.1
334,017 - MPMX19_03068 0.84 -0.7
334,249 + MPMX19_03069 0.16 -1.7
334,249 + MPMX19_03069 0.16 -0.1
334,249 + MPMX19_03069 0.16 -0.9
334,249 + MPMX19_03069 0.16 -0.8
334,250 - MPMX19_03069 0.16 +0.3

Or see this region's nucleotide sequence