Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03066 and MPMX19_03067 are separated by 192 nucleotides MPMX19_03067 and MPMX19_03068 overlap by 4 nucleotides MPMX19_03068 and MPMX19_03069 are separated by 2 nucleotides
MPMX19_03066: MPMX19_03066 - hypothetical protein, at 330,837 to 331,850
_03066
MPMX19_03067: MPMX19_03067 - hypothetical protein, at 332,043 to 333,314
_03067
MPMX19_03068: MPMX19_03068 - hypothetical protein, at 333,311 to 334,153
_03068
MPMX19_03069: MPMX19_03069 - hypothetical protein, at 334,156 to 334,749
_03069
Position (kb)
332
333
334 Strain fitness (log2 ratio)
-2
-1
0
1 at 331.924 kb on - strand at 332.004 kb on - strand at 332.372 kb on + strand, within MPMX19_03067 at 332.466 kb on + strand, within MPMX19_03067 at 332.466 kb on + strand, within MPMX19_03067 at 332.466 kb on + strand, within MPMX19_03067 at 332.467 kb on - strand, within MPMX19_03067 at 333.018 kb on + strand, within MPMX19_03067 at 333.018 kb on + strand, within MPMX19_03067 at 333.018 kb on + strand, within MPMX19_03067 at 333.018 kb on + strand, within MPMX19_03067 at 333.018 kb on + strand, within MPMX19_03067 at 333.018 kb on + strand, within MPMX19_03067 at 333.019 kb on - strand, within MPMX19_03067 at 333.019 kb on - strand, within MPMX19_03067 at 333.019 kb on - strand, within MPMX19_03067 at 333.019 kb on - strand, within MPMX19_03067 at 333.019 kb on - strand, within MPMX19_03067 at 333.019 kb on - strand, within MPMX19_03067 at 333.019 kb on - strand, within MPMX19_03067 at 333.316 kb on - strand at 333.316 kb on - strand at 333.316 kb on - strand at 333.419 kb on + strand, within MPMX19_03068 at 333.419 kb on + strand, within MPMX19_03068 at 333.420 kb on - strand, within MPMX19_03068 at 333.420 kb on - strand, within MPMX19_03068 at 333.467 kb on + strand, within MPMX19_03068 at 333.467 kb on + strand, within MPMX19_03068 at 333.467 kb on + strand, within MPMX19_03068 at 333.468 kb on - strand, within MPMX19_03068 at 333.761 kb on + strand, within MPMX19_03068 at 333.761 kb on + strand, within MPMX19_03068 at 333.761 kb on + strand, within MPMX19_03068 at 333.761 kb on + strand, within MPMX19_03068 at 333.761 kb on + strand, within MPMX19_03068 at 333.761 kb on + strand, within MPMX19_03068 at 333.761 kb on + strand, within MPMX19_03068 at 333.762 kb on - strand, within MPMX19_03068 at 333.762 kb on - strand, within MPMX19_03068 at 333.762 kb on - strand, within MPMX19_03068 at 333.929 kb on + strand, within MPMX19_03068 at 333.929 kb on + strand, within MPMX19_03068 at 333.929 kb on + strand, within MPMX19_03068 at 333.930 kb on - strand, within MPMX19_03068 at 333.998 kb on + strand, within MPMX19_03068 at 333.998 kb on + strand, within MPMX19_03068 at 333.999 kb on - strand, within MPMX19_03068 at 334.016 kb on + strand, within MPMX19_03068 at 334.017 kb on - strand, within MPMX19_03068 at 334.017 kb on - strand, within MPMX19_03068 at 334.017 kb on - strand, within MPMX19_03068 at 334.249 kb on + strand, within MPMX19_03069 at 334.249 kb on + strand, within MPMX19_03069 at 334.249 kb on + strand, within MPMX19_03069 at 334.249 kb on + strand, within MPMX19_03069 at 334.250 kb on - strand, within MPMX19_03069
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 331,924 - +1.2 332,004 - -1.5 332,372 + MPMX19_03067 0.26 +0.6 332,466 + MPMX19_03067 0.33 -0.4 332,466 + MPMX19_03067 0.33 +0.2 332,466 + MPMX19_03067 0.33 -2.1 332,467 - MPMX19_03067 0.33 -0.5 333,018 + MPMX19_03067 0.77 -0.1 333,018 + MPMX19_03067 0.77 -0.8 333,018 + MPMX19_03067 0.77 -1.5 333,018 + MPMX19_03067 0.77 -0.7 333,018 + MPMX19_03067 0.77 +0.9 333,018 + MPMX19_03067 0.77 -1.1 333,019 - MPMX19_03067 0.77 -0.7 333,019 - MPMX19_03067 0.77 -1.8 333,019 - MPMX19_03067 0.77 -1.0 333,019 - MPMX19_03067 0.77 -0.1 333,019 - MPMX19_03067 0.77 -0.3 333,019 - MPMX19_03067 0.77 -0.2 333,019 - MPMX19_03067 0.77 -0.6 333,316 - -0.7 333,316 - +0.3 333,316 - -1.2 333,419 + MPMX19_03068 0.13 +0.7 333,419 + MPMX19_03068 0.13 -0.2 333,420 - MPMX19_03068 0.13 -0.9 333,420 - MPMX19_03068 0.13 -0.4 333,467 + MPMX19_03068 0.19 -0.4 333,467 + MPMX19_03068 0.19 -0.5 333,467 + MPMX19_03068 0.19 +0.3 333,468 - MPMX19_03068 0.19 -0.6 333,761 + MPMX19_03068 0.53 +0.1 333,761 + MPMX19_03068 0.53 -1.0 333,761 + MPMX19_03068 0.53 +0.1 333,761 + MPMX19_03068 0.53 -0.4 333,761 + MPMX19_03068 0.53 -0.4 333,761 + MPMX19_03068 0.53 -1.8 333,761 + MPMX19_03068 0.53 -0.6 333,762 - MPMX19_03068 0.53 +0.9 333,762 - MPMX19_03068 0.53 +0.7 333,762 - MPMX19_03068 0.53 -0.7 333,929 + MPMX19_03068 0.73 +0.8 333,929 + MPMX19_03068 0.73 +0.1 333,929 + MPMX19_03068 0.73 -0.4 333,930 - MPMX19_03068 0.73 -0.2 333,998 + MPMX19_03068 0.81 -0.3 333,998 + MPMX19_03068 0.81 +0.3 333,999 - MPMX19_03068 0.82 +0.1 334,016 + MPMX19_03068 0.84 -0.9 334,017 - MPMX19_03068 0.84 -1.5 334,017 - MPMX19_03068 0.84 +0.1 334,017 - MPMX19_03068 0.84 -0.7 334,249 + MPMX19_03069 0.16 -1.7 334,249 + MPMX19_03069 0.16 -0.1 334,249 + MPMX19_03069 0.16 -0.9 334,249 + MPMX19_03069 0.16 -0.8 334,250 - MPMX19_03069 0.16 +0.3
Or see this region's nucleotide sequence