Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03049

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03048 and MPMX19_03049 are separated by 6 nucleotidesMPMX19_03049 and MPMX19_03050 are separated by 28 nucleotidesMPMX19_03050 and MPMX19_03051 are separated by 50 nucleotides MPMX19_03048: MPMX19_03048 - hypothetical protein, at 312,679 to 313,398 _03048 MPMX19_03049: MPMX19_03049 - putative protease YhbU, at 313,405 to 314,391 _03049 MPMX19_03050: MPMX19_03050 - hypothetical protein, at 314,420 to 315,331 _03050 MPMX19_03051: MPMX19_03051 - Sec-independent protein translocase protein TatA, at 315,382 to 315,549 _03051 Position (kb) 313 314 315Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 312.533 kb on + strandat 312.534 kb on - strandat 312.534 kb on - strandat 312.534 kb on - strandat 312.534 kb on - strandat 312.534 kb on - strandat 313.030 kb on + strand, within MPMX19_03048at 313.030 kb on + strand, within MPMX19_03048at 313.030 kb on + strand, within MPMX19_03048at 313.030 kb on + strand, within MPMX19_03048at 313.031 kb on - strand, within MPMX19_03048at 313.031 kb on - strand, within MPMX19_03048at 313.031 kb on - strand, within MPMX19_03048at 313.397 kb on - strandat 313.486 kb on + strandat 313.486 kb on + strandat 313.487 kb on - strandat 313.570 kb on + strand, within MPMX19_03049at 313.571 kb on - strand, within MPMX19_03049at 313.571 kb on - strand, within MPMX19_03049at 313.597 kb on + strand, within MPMX19_03049at 313.597 kb on + strand, within MPMX19_03049at 313.597 kb on + strand, within MPMX19_03049at 313.597 kb on + strand, within MPMX19_03049at 313.597 kb on + strand, within MPMX19_03049at 313.597 kb on + strand, within MPMX19_03049at 313.597 kb on + strand, within MPMX19_03049at 313.597 kb on + strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.615 kb on + strand, within MPMX19_03049at 313.615 kb on + strand, within MPMX19_03049at 313.616 kb on - strand, within MPMX19_03049at 313.718 kb on - strand, within MPMX19_03049at 313.718 kb on - strand, within MPMX19_03049at 313.718 kb on - strand, within MPMX19_03049at 313.798 kb on + strand, within MPMX19_03049at 313.798 kb on + strand, within MPMX19_03049at 313.799 kb on - strand, within MPMX19_03049at 313.954 kb on + strand, within MPMX19_03049at 313.955 kb on - strand, within MPMX19_03049at 313.955 kb on - strand, within MPMX19_03049at 313.955 kb on - strand, within MPMX19_03049at 313.955 kb on - strand, within MPMX19_03049at 313.955 kb on - strand, within MPMX19_03049at 314.095 kb on + strand, within MPMX19_03049at 314.144 kb on - strand, within MPMX19_03049at 314.144 kb on - strand, within MPMX19_03049at 314.251 kb on + strand, within MPMX19_03049at 314.251 kb on + strand, within MPMX19_03049at 314.251 kb on + strand, within MPMX19_03049at 314.251 kb on + strand, within MPMX19_03049at 314.251 kb on + strand, within MPMX19_03049at 314.251 kb on + strand, within MPMX19_03049at 314.251 kb on + strand, within MPMX19_03049at 314.252 kb on - strand, within MPMX19_03049at 314.252 kb on - strand, within MPMX19_03049at 314.252 kb on - strand, within MPMX19_03049at 314.252 kb on - strand, within MPMX19_03049at 314.252 kb on - strand, within MPMX19_03049at 314.252 kb on - strand, within MPMX19_03049at 314.252 kb on - strand, within MPMX19_03049at 314.252 kb on - strand, within MPMX19_03049at 314.252 kb on - strand, within MPMX19_03049at 314.253 kb on + strand, within MPMX19_03049at 314.253 kb on + strand, within MPMX19_03049at 314.276 kb on - strand, within MPMX19_03049at 314.371 kb on + strandat 314.371 kb on + strandat 314.371 kb on + strandat 314.371 kb on + strandat 314.372 kb on - strandat 314.373 kb on + strandat 314.373 kb on + strandat 314.373 kb on + strandat 314.373 kb on + strandat 314.373 kb on + strandat 314.373 kb on + strandat 314.373 kb on + strandat 314.373 kb on + strandat 314.373 kb on + strandat 314.373 kb on + strandat 314.374 kb on - strandat 314.390 kb on - strandat 314.390 kb on - strandat 314.486 kb on + strandat 314.486 kb on + strandat 314.487 kb on - strandat 314.487 kb on - strandat 314.792 kb on + strand, within MPMX19_03050at 314.792 kb on + strand, within MPMX19_03050at 314.792 kb on + strand, within MPMX19_03050at 314.792 kb on + strand, within MPMX19_03050at 314.792 kb on + strand, within MPMX19_03050at 314.792 kb on + strand, within MPMX19_03050at 314.792 kb on + strand, within MPMX19_03050at 314.792 kb on + strand, within MPMX19_03050at 314.793 kb on - strand, within MPMX19_03050at 314.793 kb on - strand, within MPMX19_03050at 314.793 kb on - strand, within MPMX19_03050at 314.793 kb on - strand, within MPMX19_03050at 314.967 kb on - strand, within MPMX19_03050at 315.296 kb on + strandat 315.296 kb on + strandat 315.296 kb on + strandat 315.296 kb on + strandat 315.296 kb on + strandat 315.296 kb on + strandat 315.297 kb on - strandat 315.297 kb on - strandat 315.297 kb on - strandat 315.297 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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312,533 + +2.4
312,534 - -0.7
312,534 - +0.7
312,534 - -1.5
312,534 - +0.1
312,534 - +0.1
313,030 + MPMX19_03048 0.49 +0.5
313,030 + MPMX19_03048 0.49 +0.1
313,030 + MPMX19_03048 0.49 +0.3
313,030 + MPMX19_03048 0.49 -1.1
313,031 - MPMX19_03048 0.49 -2.1
313,031 - MPMX19_03048 0.49 -3.2
313,031 - MPMX19_03048 0.49 +0.2
313,397 - -0.2
313,486 + +0.5
313,486 + -2.1
313,487 - -1.3
313,570 + MPMX19_03049 0.17 -0.2
313,571 - MPMX19_03049 0.17 +0.1
313,571 - MPMX19_03049 0.17 +0.1
313,597 + MPMX19_03049 0.19 -3.3
313,597 + MPMX19_03049 0.19 -0.1
313,597 + MPMX19_03049 0.19 +0.2
313,597 + MPMX19_03049 0.19 -1.9
313,597 + MPMX19_03049 0.19 +0.3
313,597 + MPMX19_03049 0.19 -0.1
313,597 + MPMX19_03049 0.19 +0.6
313,597 + MPMX19_03049 0.19 -0.1
313,598 - MPMX19_03049 0.20 -0.4
313,598 - MPMX19_03049 0.20 +0.2
313,598 - MPMX19_03049 0.20 -1.9
313,598 - MPMX19_03049 0.20 -0.4
313,598 - MPMX19_03049 0.20 -0.1
313,598 - MPMX19_03049 0.20 -0.4
313,598 - MPMX19_03049 0.20 -0.7
313,598 - MPMX19_03049 0.20 -0.6
313,598 - MPMX19_03049 0.20 +0.4
313,598 - MPMX19_03049 0.20 -0.4
313,598 - MPMX19_03049 0.20 -0.2
313,598 - MPMX19_03049 0.20 -0.1
313,598 - MPMX19_03049 0.20 +0.8
313,598 - MPMX19_03049 0.20 -0.4
313,598 - MPMX19_03049 0.20 -1.5
313,598 - MPMX19_03049 0.20 -1.8
313,615 + MPMX19_03049 0.21 +0.2
313,615 + MPMX19_03049 0.21 -0.3
313,616 - MPMX19_03049 0.21 +0.1
313,718 - MPMX19_03049 0.32 -0.5
313,718 - MPMX19_03049 0.32 -0.5
313,718 - MPMX19_03049 0.32 +0.1
313,798 + MPMX19_03049 0.40 -1.2
313,798 + MPMX19_03049 0.40 -1.2
313,799 - MPMX19_03049 0.40 +0.1
313,954 + MPMX19_03049 0.56 +0.2
313,955 - MPMX19_03049 0.56 -0.4
313,955 - MPMX19_03049 0.56 -0.5
313,955 - MPMX19_03049 0.56 -0.4
313,955 - MPMX19_03049 0.56 -0.5
313,955 - MPMX19_03049 0.56 -0.8
314,095 + MPMX19_03049 0.70 -0.8
314,144 - MPMX19_03049 0.75 -0.4
314,144 - MPMX19_03049 0.75 -1.5
314,251 + MPMX19_03049 0.86 -0.3
314,251 + MPMX19_03049 0.86 +0.4
314,251 + MPMX19_03049 0.86 +0.8
314,251 + MPMX19_03049 0.86 -0.2
314,251 + MPMX19_03049 0.86 -0.7
314,251 + MPMX19_03049 0.86 -0.1
314,251 + MPMX19_03049 0.86 -2.0
314,252 - MPMX19_03049 0.86 +0.0
314,252 - MPMX19_03049 0.86 +0.9
314,252 - MPMX19_03049 0.86 -1.2
314,252 - MPMX19_03049 0.86 -1.2
314,252 - MPMX19_03049 0.86 -0.1
314,252 - MPMX19_03049 0.86 -1.9
314,252 - MPMX19_03049 0.86 +0.8
314,252 - MPMX19_03049 0.86 +0.1
314,252 - MPMX19_03049 0.86 +0.1
314,253 + MPMX19_03049 0.86 -0.4
314,253 + MPMX19_03049 0.86 +1.6
314,276 - MPMX19_03049 0.88 +0.1
314,371 + +0.1
314,371 + -0.7
314,371 + -1.0
314,371 + +0.1
314,372 - -0.5
314,373 + -0.4
314,373 + -1.0
314,373 + -1.2
314,373 + +0.3
314,373 + -1.7
314,373 + +1.1
314,373 + -2.4
314,373 + -0.6
314,373 + -0.8
314,373 + -1.2
314,374 - +0.6
314,390 - -0.2
314,390 - +0.6
314,486 + -0.4
314,486 + -0.1
314,487 - +0.4
314,487 - +1.8
314,792 + MPMX19_03050 0.41 +0.4
314,792 + MPMX19_03050 0.41 +0.3
314,792 + MPMX19_03050 0.41 +1.4
314,792 + MPMX19_03050 0.41 -1.9
314,792 + MPMX19_03050 0.41 -1.2
314,792 + MPMX19_03050 0.41 -0.8
314,792 + MPMX19_03050 0.41 -0.5
314,792 + MPMX19_03050 0.41 +0.2
314,793 - MPMX19_03050 0.41 -1.3
314,793 - MPMX19_03050 0.41 -0.8
314,793 - MPMX19_03050 0.41 -0.2
314,793 - MPMX19_03050 0.41 -0.2
314,967 - MPMX19_03050 0.60 -1.1
315,296 + -1.4
315,296 + -2.4
315,296 + -0.8
315,296 + -0.2
315,296 + +0.6
315,296 + -1.2
315,297 - +1.2
315,297 - +0.1
315,297 - -1.1
315,297 - +0.6

Or see this region's nucleotide sequence