Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03043 and MPMX19_03044 are separated by 72 nucleotides MPMX19_03044 and MPMX19_03045 are separated by 275 nucleotides MPMX19_03045 and MPMX19_03046 are separated by 35 nucleotides
MPMX19_03043: MPMX19_03043 - putative oxidoreductase YghA, at 309,005 to 309,907
_03043
MPMX19_03044: MPMX19_03044 - hypothetical protein, at 309,980 to 310,693
_03044
MPMX19_03045: MPMX19_03045 - hypothetical protein, at 310,969 to 311,631
_03045
MPMX19_03046: MPMX19_03046 - hypothetical protein, at 311,667 to 311,819
_03046
Position (kb) 309
310
311 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 309.053 kb on + strand at 309.054 kb on - strand at 309.143 kb on + strand, within MPMX19_03043 at 309.143 kb on + strand, within MPMX19_03043 at 309.143 kb on + strand, within MPMX19_03043 at 309.143 kb on + strand, within MPMX19_03043 at 309.143 kb on + strand, within MPMX19_03043 at 309.143 kb on + strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.227 kb on + strand, within MPMX19_03043 at 309.227 kb on + strand, within MPMX19_03043 at 309.228 kb on - strand, within MPMX19_03043 at 309.228 kb on - strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.590 kb on + strand, within MPMX19_03043 at 309.590 kb on + strand, within MPMX19_03043 at 309.590 kb on + strand, within MPMX19_03043 at 309.590 kb on + strand, within MPMX19_03043 at 309.591 kb on - strand, within MPMX19_03043 at 309.591 kb on - strand, within MPMX19_03043 at 309.591 kb on - strand, within MPMX19_03043 at 309.591 kb on - strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.612 kb on - strand, within MPMX19_03043 at 309.612 kb on - strand, within MPMX19_03043 at 309.612 kb on - strand, within MPMX19_03043 at 309.617 kb on + strand, within MPMX19_03043 at 309.617 kb on + strand, within MPMX19_03043 at 309.617 kb on + strand, within MPMX19_03043 at 309.617 kb on + strand, within MPMX19_03043 at 309.617 kb on + strand, within MPMX19_03043 at 309.617 kb on + strand, within MPMX19_03043 at 309.618 kb on - strand, within MPMX19_03043 at 309.647 kb on + strand, within MPMX19_03043 at 309.647 kb on + strand, within MPMX19_03043 at 309.647 kb on + strand, within MPMX19_03043 at 309.647 kb on + strand, within MPMX19_03043 at 309.647 kb on + strand, within MPMX19_03043 at 309.647 kb on + strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.875 kb on + strand at 309.875 kb on + strand at 309.875 kb on + strand at 309.875 kb on + strand at 309.876 kb on - strand at 309.876 kb on - strand at 309.876 kb on - strand at 309.905 kb on + strand at 309.905 kb on + strand at 309.906 kb on - strand at 309.906 kb on - strand at 310.065 kb on + strand, within MPMX19_03044 at 310.190 kb on + strand, within MPMX19_03044 at 310.190 kb on + strand, within MPMX19_03044 at 310.190 kb on + strand, within MPMX19_03044 at 310.191 kb on - strand, within MPMX19_03044 at 310.191 kb on - strand, within MPMX19_03044 at 310.191 kb on - strand, within MPMX19_03044 at 310.191 kb on - strand, within MPMX19_03044 at 310.191 kb on - strand, within MPMX19_03044 at 310.482 kb on + strand, within MPMX19_03044 at 310.482 kb on + strand, within MPMX19_03044 at 310.485 kb on + strand, within MPMX19_03044 at 310.485 kb on + strand, within MPMX19_03044 at 310.485 kb on + strand, within MPMX19_03044 at 310.485 kb on + strand, within MPMX19_03044 at 310.733 kb on + strand at 310.736 kb on - strand at 310.760 kb on + strand at 310.760 kb on + strand at 310.761 kb on - strand at 310.761 kb on - strand at 310.761 kb on - strand at 310.761 kb on - strand at 310.856 kb on - strand at 310.897 kb on - strand at 311.000 kb on + strand at 311.000 kb on + strand at 311.001 kb on - strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.003 kb on - strand at 311.101 kb on + strand, within MPMX19_03045 at 311.102 kb on - strand, within MPMX19_03045 at 311.102 kb on - strand, within MPMX19_03045 at 311.102 kb on - strand, within MPMX19_03045 at 311.273 kb on + strand, within MPMX19_03045 at 311.377 kb on - strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.402 kb on - strand, within MPMX19_03045 at 311.402 kb on - strand, within MPMX19_03045 at 311.402 kb on - strand, within MPMX19_03045 at 311.402 kb on - strand, within MPMX19_03045 at 311.542 kb on + strand, within MPMX19_03045 at 311.542 kb on + strand, within MPMX19_03045 at 311.542 kb on + strand, within MPMX19_03045 at 311.542 kb on + strand, within MPMX19_03045 at 311.542 kb on + strand, within MPMX19_03045 at 311.543 kb on - strand, within MPMX19_03045 at 311.543 kb on - strand, within MPMX19_03045 at 311.543 kb on - strand, within MPMX19_03045 at 311.543 kb on - strand, within MPMX19_03045 at 311.543 kb on - strand, within MPMX19_03045 at 311.593 kb on - strand at 311.594 kb on + strand at 311.594 kb on + strand at 311.594 kb on + strand at 311.594 kb on + strand at 311.594 kb on + strand at 311.594 kb on + strand at 311.594 kb on + strand at 311.595 kb on - strand at 311.629 kb on + strand at 311.630 kb on - strand at 311.630 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 309,053 + -0.5 309,054 - -1.0 309,143 + MPMX19_03043 0.15 +1.1 309,143 + MPMX19_03043 0.15 -0.6 309,143 + MPMX19_03043 0.15 +0.8 309,143 + MPMX19_03043 0.15 -0.4 309,143 + MPMX19_03043 0.15 -0.3 309,143 + MPMX19_03043 0.15 +1.1 309,144 - MPMX19_03043 0.15 +0.6 309,144 - MPMX19_03043 0.15 -0.9 309,144 - MPMX19_03043 0.15 -1.7 309,144 - MPMX19_03043 0.15 -0.1 309,144 - MPMX19_03043 0.15 -0.9 309,144 - MPMX19_03043 0.15 +1.3 309,144 - MPMX19_03043 0.15 +1.2 309,144 - MPMX19_03043 0.15 -1.8 309,144 - MPMX19_03043 0.15 -0.4 309,144 - MPMX19_03043 0.15 -0.0 309,227 + MPMX19_03043 0.25 +1.1 309,227 + MPMX19_03043 0.25 -1.7 309,228 - MPMX19_03043 0.25 -0.2 309,228 - MPMX19_03043 0.25 -0.7 309,506 + MPMX19_03043 0.55 -0.5 309,506 + MPMX19_03043 0.55 -0.7 309,506 + MPMX19_03043 0.55 +0.5 309,506 + MPMX19_03043 0.55 -0.1 309,506 + MPMX19_03043 0.55 -0.5 309,506 + MPMX19_03043 0.55 -0.8 309,506 + MPMX19_03043 0.55 +0.9 309,506 + MPMX19_03043 0.55 -0.1 309,506 + MPMX19_03043 0.55 -0.5 309,506 + MPMX19_03043 0.55 -0.9 309,507 - MPMX19_03043 0.56 -1.6 309,507 - MPMX19_03043 0.56 +1.2 309,507 - MPMX19_03043 0.56 -0.6 309,507 - MPMX19_03043 0.56 -1.6 309,507 - MPMX19_03043 0.56 +0.4 309,507 - MPMX19_03043 0.56 -1.1 309,507 - MPMX19_03043 0.56 +0.1 309,507 - MPMX19_03043 0.56 -0.2 309,507 - MPMX19_03043 0.56 +0.1 309,507 - MPMX19_03043 0.56 -0.8 309,507 - MPMX19_03043 0.56 -0.7 309,507 - MPMX19_03043 0.56 -0.0 309,590 + MPMX19_03043 0.65 -1.0 309,590 + MPMX19_03043 0.65 -1.4 309,590 + MPMX19_03043 0.65 +0.1 309,590 + MPMX19_03043 0.65 -0.6 309,591 - MPMX19_03043 0.65 +0.6 309,591 - MPMX19_03043 0.65 +0.1 309,591 - MPMX19_03043 0.65 -2.1 309,591 - MPMX19_03043 0.65 +0.1 309,611 + MPMX19_03043 0.67 -1.9 309,611 + MPMX19_03043 0.67 -0.9 309,611 + MPMX19_03043 0.67 +0.1 309,611 + MPMX19_03043 0.67 +0.3 309,611 + MPMX19_03043 0.67 -0.8 309,611 + MPMX19_03043 0.67 +0.6 309,611 + MPMX19_03043 0.67 -0.4 309,611 + MPMX19_03043 0.67 -1.3 309,611 + MPMX19_03043 0.67 -1.1 309,612 - MPMX19_03043 0.67 -3.1 309,612 - MPMX19_03043 0.67 -0.7 309,612 - MPMX19_03043 0.67 -0.9 309,617 + MPMX19_03043 0.68 +0.2 309,617 + MPMX19_03043 0.68 -0.8 309,617 + MPMX19_03043 0.68 -0.6 309,617 + MPMX19_03043 0.68 -0.5 309,617 + MPMX19_03043 0.68 -1.5 309,617 + MPMX19_03043 0.68 -0.1 309,618 - MPMX19_03043 0.68 -0.3 309,647 + MPMX19_03043 0.71 +0.1 309,647 + MPMX19_03043 0.71 +0.1 309,647 + MPMX19_03043 0.71 -0.7 309,647 + MPMX19_03043 0.71 +0.9 309,647 + MPMX19_03043 0.71 -0.2 309,647 + MPMX19_03043 0.71 -1.1 309,648 - MPMX19_03043 0.71 -1.5 309,648 - MPMX19_03043 0.71 -2.4 309,648 - MPMX19_03043 0.71 +2.2 309,648 - MPMX19_03043 0.71 -2.5 309,648 - MPMX19_03043 0.71 -0.7 309,648 - MPMX19_03043 0.71 +0.3 309,648 - MPMX19_03043 0.71 +0.9 309,648 - MPMX19_03043 0.71 -0.9 309,648 - MPMX19_03043 0.71 -0.9 309,648 - MPMX19_03043 0.71 -0.7 309,827 + +2.1 309,827 + -0.6 309,827 + -0.9 309,827 + +0.3 309,827 + -0.1 309,827 + -0.1 309,827 + -0.5 309,827 + +0.5 309,827 + -1.4 309,827 + -0.9 309,827 + -0.2 309,827 + +1.1 309,827 + +0.5 309,827 + -0.3 309,827 + +0.2 309,828 - -0.9 309,828 - -0.4 309,828 - -1.7 309,828 - -0.1 309,828 - +0.7 309,828 - -1.4 309,828 - +0.4 309,828 - -1.2 309,828 - -0.4 309,828 - -0.9 309,828 - -1.5 309,828 - +0.1 309,828 - -1.4 309,828 - -0.4 309,828 - -0.9 309,828 - -0.5 309,828 - -0.1 309,828 - -1.9 309,828 - -2.3 309,828 - -0.9 309,828 - -1.1 309,875 + +0.3 309,875 + -0.9 309,875 + -0.5 309,875 + -0.5 309,876 - -1.0 309,876 - -0.4 309,876 - -0.9 309,905 + -2.0 309,905 + -0.0 309,906 - -0.0 309,906 - -2.5 310,065 + MPMX19_03044 0.12 -1.2 310,190 + MPMX19_03044 0.29 +0.1 310,190 + MPMX19_03044 0.29 +0.4 310,190 + MPMX19_03044 0.29 -1.1 310,191 - MPMX19_03044 0.30 -1.9 310,191 - MPMX19_03044 0.30 +1.2 310,191 - MPMX19_03044 0.30 -0.4 310,191 - MPMX19_03044 0.30 -0.5 310,191 - MPMX19_03044 0.30 +0.1 310,482 + MPMX19_03044 0.70 -0.8 310,482 + MPMX19_03044 0.70 -1.5 310,485 + MPMX19_03044 0.71 -1.9 310,485 + MPMX19_03044 0.71 -0.9 310,485 + MPMX19_03044 0.71 +0.4 310,485 + MPMX19_03044 0.71 -0.5 310,733 + +1.1 310,736 - -0.1 310,760 + -1.4 310,760 + +1.0 310,761 - -0.5 310,761 - -0.4 310,761 - +0.6 310,761 - +0.8 310,856 - -0.2 310,897 - -0.5 311,000 + +0.6 311,000 + -1.2 311,001 - -0.8 311,002 + +0.8 311,002 + -0.4 311,002 + -1.2 311,002 + -1.4 311,002 + +0.8 311,002 + -2.1 311,002 + -0.1 311,002 + -1.7 311,002 + +0.6 311,002 + -1.1 311,003 - +0.3 311,101 + MPMX19_03045 0.20 +0.3 311,102 - MPMX19_03045 0.20 -0.6 311,102 - MPMX19_03045 0.20 -0.5 311,102 - MPMX19_03045 0.20 -1.8 311,273 + MPMX19_03045 0.46 -0.4 311,377 - MPMX19_03045 0.62 +0.1 311,401 + MPMX19_03045 0.65 -0.9 311,401 + MPMX19_03045 0.65 -0.5 311,401 + MPMX19_03045 0.65 +0.6 311,401 + MPMX19_03045 0.65 +0.1 311,401 + MPMX19_03045 0.65 -0.7 311,401 + MPMX19_03045 0.65 +0.4 311,401 + MPMX19_03045 0.65 -0.0 311,402 - MPMX19_03045 0.65 +0.3 311,402 - MPMX19_03045 0.65 -0.7 311,402 - MPMX19_03045 0.65 +0.5 311,402 - MPMX19_03045 0.65 +1.1 311,542 + MPMX19_03045 0.86 -0.2 311,542 + MPMX19_03045 0.86 -1.4 311,542 + MPMX19_03045 0.86 +0.5 311,542 + MPMX19_03045 0.86 -1.2 311,542 + MPMX19_03045 0.86 -0.7 311,543 - MPMX19_03045 0.87 +0.9 311,543 - MPMX19_03045 0.87 -1.9 311,543 - MPMX19_03045 0.87 +0.3 311,543 - MPMX19_03045 0.87 -1.8 311,543 - MPMX19_03045 0.87 +0.2 311,593 - -0.6 311,594 + -0.1 311,594 + +0.5 311,594 + +1.4 311,594 + -0.7 311,594 + -1.4 311,594 + +0.6 311,594 + -0.9 311,595 - -0.0 311,629 + -2.1 311,630 - -0.1 311,630 - -1.6
Or see this region's nucleotide sequence