Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03031

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03030 and MPMX19_03031 are separated by 49 nucleotidesMPMX19_03031 and MPMX19_03032 are separated by 299 nucleotides MPMX19_03030: MPMX19_03030 - Xylulose kinase, at 296,338 to 297,789 _03030 MPMX19_03031: MPMX19_03031 - hypothetical protein, at 297,839 to 298,897 _03031 MPMX19_03032: MPMX19_03032 - hypothetical protein, at 299,197 to 301,047 _03032 Position (kb) 297 298 299Strain fitness (log2 ratio) -2 -1 0 1at 297.320 kb on + strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.321 kb on - strand, within MPMX19_03030at 297.321 kb on - strand, within MPMX19_03030at 297.321 kb on - strand, within MPMX19_03030at 297.321 kb on - strand, within MPMX19_03030at 297.321 kb on - strand, within MPMX19_03030at 297.321 kb on - strand, within MPMX19_03030at 297.321 kb on - strand, within MPMX19_03030at 297.321 kb on - strand, within MPMX19_03030at 297.875 kb on + strandat 297.875 kb on + strandat 297.875 kb on + strandat 297.875 kb on + strandat 297.875 kb on + strandat 297.875 kb on + strandat 297.875 kb on + strandat 297.875 kb on + strandat 297.876 kb on - strandat 297.876 kb on - strandat 297.876 kb on - strandat 297.876 kb on - strandat 297.876 kb on - strandat 297.876 kb on - strandat 297.876 kb on - strandat 297.876 kb on - strandat 297.876 kb on - strandat 298.107 kb on + strand, within MPMX19_03031at 298.107 kb on + strand, within MPMX19_03031at 298.107 kb on + strand, within MPMX19_03031at 298.107 kb on + strand, within MPMX19_03031at 298.107 kb on + strand, within MPMX19_03031at 298.107 kb on + strand, within MPMX19_03031at 298.107 kb on + strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.216 kb on - strand, within MPMX19_03031at 298.288 kb on + strand, within MPMX19_03031at 298.289 kb on - strand, within MPMX19_03031at 298.289 kb on - strand, within MPMX19_03031at 298.289 kb on - strand, within MPMX19_03031at 298.289 kb on - strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 299.032 kb on - strandat 299.051 kb on + strandat 299.052 kb on - strandat 299.052 kb on - strandat 299.052 kb on - strandat 299.058 kb on + strandat 299.058 kb on + strandat 299.058 kb on + strandat 299.058 kb on + strandat 299.058 kb on + strandat 299.059 kb on - strandat 299.059 kb on - strandat 299.059 kb on - strandat 299.059 kb on - strandat 299.059 kb on - strandat 299.097 kb on + strandat 299.098 kb on - strandat 299.158 kb on - strandat 299.158 kb on - strandat 299.158 kb on - strandat 299.512 kb on + strand, within MPMX19_03032at 299.512 kb on + strand, within MPMX19_03032at 299.512 kb on + strand, within MPMX19_03032at 299.512 kb on + strand, within MPMX19_03032at 299.512 kb on + strand, within MPMX19_03032at 299.512 kb on + strand, within MPMX19_03032at 299.512 kb on + strand, within MPMX19_03032at 299.512 kb on + strand, within MPMX19_03032at 299.512 kb on + strand, within MPMX19_03032at 299.512 kb on + strand, within MPMX19_03032at 299.512 kb on + strand, within MPMX19_03032at 299.512 kb on + strand, within MPMX19_03032at 299.512 kb on + strand, within MPMX19_03032at 299.513 kb on - strand, within MPMX19_03032at 299.513 kb on - strand, within MPMX19_03032at 299.513 kb on - strand, within MPMX19_03032at 299.513 kb on - strand, within MPMX19_03032at 299.513 kb on - strand, within MPMX19_03032at 299.513 kb on - strand, within MPMX19_03032at 299.513 kb on - strand, within MPMX19_03032at 299.513 kb on - strand, within MPMX19_03032at 299.513 kb on - strand, within MPMX19_03032at 299.513 kb on - strand, within MPMX19_03032at 299.513 kb on - strand, within MPMX19_03032at 299.524 kb on + strand, within MPMX19_03032at 299.524 kb on + strand, within MPMX19_03032at 299.524 kb on + strand, within MPMX19_03032at 299.524 kb on + strand, within MPMX19_03032at 299.524 kb on + strand, within MPMX19_03032at 299.524 kb on + strand, within MPMX19_03032at 299.524 kb on + strand, within MPMX19_03032at 299.524 kb on + strand, within MPMX19_03032at 299.524 kb on + strand, within MPMX19_03032at 299.524 kb on + strand, within MPMX19_03032at 299.524 kb on + strand, within MPMX19_03032at 299.524 kb on + strand, within MPMX19_03032at 299.525 kb on - strand, within MPMX19_03032at 299.525 kb on - strand, within MPMX19_03032at 299.525 kb on - strand, within MPMX19_03032at 299.525 kb on - strand, within MPMX19_03032at 299.525 kb on - strand, within MPMX19_03032at 299.525 kb on - strand, within MPMX19_03032at 299.525 kb on - strand, within MPMX19_03032at 299.525 kb on - strand, within MPMX19_03032at 299.525 kb on - strand, within MPMX19_03032at 299.840 kb on - strand, within MPMX19_03032

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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297,320 + MPMX19_03030 0.68 -1.5
297,320 + MPMX19_03030 0.68 +1.3
297,320 + MPMX19_03030 0.68 +0.5
297,320 + MPMX19_03030 0.68 -1.8
297,320 + MPMX19_03030 0.68 -1.2
297,320 + MPMX19_03030 0.68 -0.4
297,320 + MPMX19_03030 0.68 +0.6
297,320 + MPMX19_03030 0.68 -0.1
297,320 + MPMX19_03030 0.68 -2.0
297,321 - MPMX19_03030 0.68 -1.4
297,321 - MPMX19_03030 0.68 -0.6
297,321 - MPMX19_03030 0.68 -0.0
297,321 - MPMX19_03030 0.68 +0.5
297,321 - MPMX19_03030 0.68 -0.3
297,321 - MPMX19_03030 0.68 -0.1
297,321 - MPMX19_03030 0.68 -1.2
297,321 - MPMX19_03030 0.68 +0.0
297,875 + -0.2
297,875 + +0.9
297,875 + +1.1
297,875 + +0.3
297,875 + +0.2
297,875 + -0.3
297,875 + -0.3
297,875 + -0.2
297,876 - -0.1
297,876 - -2.4
297,876 - -0.4
297,876 - +0.1
297,876 - +0.3
297,876 - -0.4
297,876 - +0.6
297,876 - -2.5
297,876 - -0.1
298,107 + MPMX19_03031 0.25 -0.8
298,107 + MPMX19_03031 0.25 +0.1
298,107 + MPMX19_03031 0.25 -0.9
298,107 + MPMX19_03031 0.25 -0.3
298,107 + MPMX19_03031 0.25 +0.5
298,107 + MPMX19_03031 0.25 -2.1
298,107 + MPMX19_03031 0.25 -0.9
298,108 - MPMX19_03031 0.25 -1.3
298,108 - MPMX19_03031 0.25 -1.9
298,108 - MPMX19_03031 0.25 +1.0
298,108 - MPMX19_03031 0.25 -2.5
298,108 - MPMX19_03031 0.25 -0.2
298,108 - MPMX19_03031 0.25 -0.5
298,108 - MPMX19_03031 0.25 +0.5
298,108 - MPMX19_03031 0.25 -1.4
298,108 - MPMX19_03031 0.25 -0.9
298,108 - MPMX19_03031 0.25 +0.3
298,108 - MPMX19_03031 0.25 +0.2
298,108 - MPMX19_03031 0.25 -0.6
298,108 - MPMX19_03031 0.25 -0.2
298,216 - MPMX19_03031 0.36 -0.4
298,288 + MPMX19_03031 0.42 +0.8
298,289 - MPMX19_03031 0.42 -0.1
298,289 - MPMX19_03031 0.42 -0.7
298,289 - MPMX19_03031 0.42 -1.2
298,289 - MPMX19_03031 0.42 +0.9
298,392 + MPMX19_03031 0.52 -0.1
298,392 + MPMX19_03031 0.52 -0.1
298,392 + MPMX19_03031 0.52 -1.8
298,392 + MPMX19_03031 0.52 +0.1
298,392 + MPMX19_03031 0.52 +0.6
298,392 + MPMX19_03031 0.52 -0.9
298,392 + MPMX19_03031 0.52 -0.5
298,392 + MPMX19_03031 0.52 -1.2
298,392 + MPMX19_03031 0.52 -0.7
298,393 - MPMX19_03031 0.52 +1.3
298,393 - MPMX19_03031 0.52 -0.7
298,393 - MPMX19_03031 0.52 -1.2
298,393 - MPMX19_03031 0.52 -0.1
298,393 - MPMX19_03031 0.52 -1.3
298,393 - MPMX19_03031 0.52 -1.0
298,393 - MPMX19_03031 0.52 -0.7
298,393 - MPMX19_03031 0.52 -0.6
298,393 - MPMX19_03031 0.52 -1.5
299,032 - -0.7
299,051 + +0.3
299,052 - +0.5
299,052 - +0.1
299,052 - +0.1
299,058 + -0.9
299,058 + -0.2
299,058 + -0.5
299,058 + +0.2
299,058 + -0.2
299,059 - -0.2
299,059 - +1.1
299,059 - +0.6
299,059 - +0.1
299,059 - +0.3
299,097 + -1.4
299,098 - +1.5
299,158 - -0.9
299,158 - -0.7
299,158 - -1.4
299,512 + MPMX19_03032 0.17 +0.6
299,512 + MPMX19_03032 0.17 +0.9
299,512 + MPMX19_03032 0.17 -0.6
299,512 + MPMX19_03032 0.17 +0.2
299,512 + MPMX19_03032 0.17 -1.2
299,512 + MPMX19_03032 0.17 -0.6
299,512 + MPMX19_03032 0.17 -1.2
299,512 + MPMX19_03032 0.17 +0.2
299,512 + MPMX19_03032 0.17 +0.1
299,512 + MPMX19_03032 0.17 -0.5
299,512 + MPMX19_03032 0.17 -0.2
299,512 + MPMX19_03032 0.17 +1.1
299,512 + MPMX19_03032 0.17 -0.9
299,513 - MPMX19_03032 0.17 -0.9
299,513 - MPMX19_03032 0.17 -0.2
299,513 - MPMX19_03032 0.17 +0.3
299,513 - MPMX19_03032 0.17 -0.6
299,513 - MPMX19_03032 0.17 -0.3
299,513 - MPMX19_03032 0.17 -0.2
299,513 - MPMX19_03032 0.17 -0.7
299,513 - MPMX19_03032 0.17 +0.1
299,513 - MPMX19_03032 0.17 +0.9
299,513 - MPMX19_03032 0.17 -0.3
299,513 - MPMX19_03032 0.17 -0.7
299,524 + MPMX19_03032 0.18 -0.3
299,524 + MPMX19_03032 0.18 +1.6
299,524 + MPMX19_03032 0.18 -1.2
299,524 + MPMX19_03032 0.18 +0.2
299,524 + MPMX19_03032 0.18 +0.2
299,524 + MPMX19_03032 0.18 -0.7
299,524 + MPMX19_03032 0.18 -1.2
299,524 + MPMX19_03032 0.18 +0.1
299,524 + MPMX19_03032 0.18 -0.1
299,524 + MPMX19_03032 0.18 +0.6
299,524 + MPMX19_03032 0.18 -0.1
299,524 + MPMX19_03032 0.18 +0.4
299,525 - MPMX19_03032 0.18 -0.9
299,525 - MPMX19_03032 0.18 -0.5
299,525 - MPMX19_03032 0.18 -1.3
299,525 - MPMX19_03032 0.18 +0.8
299,525 - MPMX19_03032 0.18 -0.4
299,525 - MPMX19_03032 0.18 +0.4
299,525 - MPMX19_03032 0.18 -1.2
299,525 - MPMX19_03032 0.18 +0.1
299,525 - MPMX19_03032 0.18 -0.3
299,840 - MPMX19_03032 0.35 -0.4

Or see this region's nucleotide sequence