Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03006

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03005 and MPMX19_03006 are separated by 14 nucleotidesMPMX19_03006 and MPMX19_03007 overlap by 4 nucleotides MPMX19_03005: MPMX19_03005 - Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha, at 267,591 to 268,664 _03005 MPMX19_03006: MPMX19_03006 - Ribose import permease protein RbsC, at 268,679 to 269,668 _03006 MPMX19_03007: MPMX19_03007 - Arabinose import ATP-binding protein AraG, at 269,665 to 271,203 _03007 Position (kb) 268 269 270Strain fitness (log2 ratio) -2 -1 0 1 2at 267.889 kb on + strand, within MPMX19_03005at 267.889 kb on + strand, within MPMX19_03005at 268.147 kb on + strand, within MPMX19_03005at 268.147 kb on + strand, within MPMX19_03005at 268.147 kb on + strand, within MPMX19_03005at 268.147 kb on + strand, within MPMX19_03005at 268.333 kb on + strand, within MPMX19_03005at 268.576 kb on + strandat 268.576 kb on + strandat 268.660 kb on + strandat 268.660 kb on + strandat 268.660 kb on + strandat 268.660 kb on + strandat 268.660 kb on + strandat 268.660 kb on + strandat 268.661 kb on - strandat 268.661 kb on - strandat 268.661 kb on - strandat 268.661 kb on - strandat 268.761 kb on + strandat 268.761 kb on + strandat 268.761 kb on + strandat 268.761 kb on + strandat 268.761 kb on + strandat 268.761 kb on + strandat 268.761 kb on + strandat 268.761 kb on + strandat 268.762 kb on - strandat 268.762 kb on - strandat 268.762 kb on - strandat 268.762 kb on - strandat 268.762 kb on - strandat 268.762 kb on - strandat 268.762 kb on - strandat 268.762 kb on - strandat 268.762 kb on - strandat 268.762 kb on - strandat 269.004 kb on + strand, within MPMX19_03006at 269.004 kb on + strand, within MPMX19_03006at 269.004 kb on + strand, within MPMX19_03006at 269.004 kb on + strand, within MPMX19_03006at 269.004 kb on + strand, within MPMX19_03006at 269.004 kb on + strand, within MPMX19_03006at 269.004 kb on + strand, within MPMX19_03006at 269.005 kb on - strand, within MPMX19_03006at 269.005 kb on - strand, within MPMX19_03006at 269.005 kb on - strand, within MPMX19_03006at 269.061 kb on + strand, within MPMX19_03006at 269.061 kb on + strand, within MPMX19_03006at 269.061 kb on + strand, within MPMX19_03006at 269.062 kb on - strand, within MPMX19_03006at 269.062 kb on - strand, within MPMX19_03006at 269.062 kb on - strand, within MPMX19_03006at 269.062 kb on - strand, within MPMX19_03006at 269.067 kb on + strand, within MPMX19_03006at 269.067 kb on + strand, within MPMX19_03006at 269.068 kb on - strand, within MPMX19_03006at 269.068 kb on - strand, within MPMX19_03006at 269.068 kb on - strand, within MPMX19_03006at 269.178 kb on + strand, within MPMX19_03006at 269.178 kb on + strand, within MPMX19_03006at 269.178 kb on + strand, within MPMX19_03006at 269.178 kb on + strand, within MPMX19_03006at 269.178 kb on + strand, within MPMX19_03006at 269.178 kb on + strand, within MPMX19_03006at 269.178 kb on + strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.179 kb on - strand, within MPMX19_03006at 269.199 kb on + strand, within MPMX19_03006at 269.199 kb on + strand, within MPMX19_03006at 269.199 kb on + strand, within MPMX19_03006at 269.199 kb on + strand, within MPMX19_03006at 269.199 kb on + strand, within MPMX19_03006at 269.200 kb on - strand, within MPMX19_03006at 269.418 kb on + strand, within MPMX19_03006at 269.418 kb on + strand, within MPMX19_03006at 269.418 kb on + strand, within MPMX19_03006at 269.592 kb on + strandat 269.592 kb on + strandat 269.592 kb on + strandat 269.593 kb on - strandat 269.593 kb on - strandat 269.879 kb on + strand, within MPMX19_03007at 269.879 kb on + strand, within MPMX19_03007at 269.880 kb on - strand, within MPMX19_03007at 269.880 kb on - strand, within MPMX19_03007at 269.880 kb on - strand, within MPMX19_03007at 269.880 kb on - strand, within MPMX19_03007at 269.960 kb on + strand, within MPMX19_03007at 269.961 kb on - strand, within MPMX19_03007at 270.176 kb on + strand, within MPMX19_03007at 270.177 kb on - strand, within MPMX19_03007at 270.177 kb on - strand, within MPMX19_03007

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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267,889 + MPMX19_03005 0.28 -0.3
267,889 + MPMX19_03005 0.28 +1.1
268,147 + MPMX19_03005 0.52 -0.4
268,147 + MPMX19_03005 0.52 -0.8
268,147 + MPMX19_03005 0.52 +0.5
268,147 + MPMX19_03005 0.52 -1.0
268,333 + MPMX19_03005 0.69 -0.1
268,576 + -1.1
268,576 + -1.1
268,660 + +0.8
268,660 + +1.0
268,660 + +0.6
268,660 + +0.9
268,660 + -0.4
268,660 + -0.7
268,661 - -0.6
268,661 - +1.0
268,661 - +0.5
268,661 - -0.1
268,761 + -0.5
268,761 + -0.5
268,761 + +0.0
268,761 + -0.5
268,761 + -0.4
268,761 + +0.5
268,761 + -1.2
268,761 + -0.2
268,762 - -1.6
268,762 - -1.2
268,762 - -1.1
268,762 - +0.2
268,762 - -1.0
268,762 - +0.5
268,762 - +0.5
268,762 - +0.3
268,762 - +0.0
268,762 - -1.4
269,004 + MPMX19_03006 0.33 -1.0
269,004 + MPMX19_03006 0.33 -0.5
269,004 + MPMX19_03006 0.33 -1.5
269,004 + MPMX19_03006 0.33 +0.6
269,004 + MPMX19_03006 0.33 -1.4
269,004 + MPMX19_03006 0.33 +0.0
269,004 + MPMX19_03006 0.33 +0.1
269,005 - MPMX19_03006 0.33 -2.1
269,005 - MPMX19_03006 0.33 +0.3
269,005 - MPMX19_03006 0.33 -0.4
269,061 + MPMX19_03006 0.39 +0.6
269,061 + MPMX19_03006 0.39 +0.6
269,061 + MPMX19_03006 0.39 +1.6
269,062 - MPMX19_03006 0.39 +1.6
269,062 - MPMX19_03006 0.39 -0.2
269,062 - MPMX19_03006 0.39 +0.9
269,062 - MPMX19_03006 0.39 -1.8
269,067 + MPMX19_03006 0.39 -1.0
269,067 + MPMX19_03006 0.39 -1.8
269,068 - MPMX19_03006 0.39 +0.2
269,068 - MPMX19_03006 0.39 -0.4
269,068 - MPMX19_03006 0.39 -0.6
269,178 + MPMX19_03006 0.50 -1.0
269,178 + MPMX19_03006 0.50 -0.3
269,178 + MPMX19_03006 0.50 -1.7
269,178 + MPMX19_03006 0.50 -0.8
269,178 + MPMX19_03006 0.50 -0.3
269,178 + MPMX19_03006 0.50 +0.4
269,178 + MPMX19_03006 0.50 +1.0
269,179 - MPMX19_03006 0.51 -2.0
269,179 - MPMX19_03006 0.51 -0.7
269,179 - MPMX19_03006 0.51 -1.2
269,179 - MPMX19_03006 0.51 -1.4
269,179 - MPMX19_03006 0.51 -0.6
269,179 - MPMX19_03006 0.51 -2.7
269,179 - MPMX19_03006 0.51 -1.3
269,179 - MPMX19_03006 0.51 -0.2
269,179 - MPMX19_03006 0.51 +0.0
269,179 - MPMX19_03006 0.51 +0.1
269,199 + MPMX19_03006 0.53 -1.6
269,199 + MPMX19_03006 0.53 +0.1
269,199 + MPMX19_03006 0.53 +0.7
269,199 + MPMX19_03006 0.53 +0.2
269,199 + MPMX19_03006 0.53 +0.2
269,200 - MPMX19_03006 0.53 -1.3
269,418 + MPMX19_03006 0.75 -1.0
269,418 + MPMX19_03006 0.75 -1.0
269,418 + MPMX19_03006 0.75 -1.5
269,592 + +2.2
269,592 + +1.9
269,592 + +0.0
269,593 - -0.8
269,593 - +0.0
269,879 + MPMX19_03007 0.14 +0.8
269,879 + MPMX19_03007 0.14 -0.6
269,880 - MPMX19_03007 0.14 -1.2
269,880 - MPMX19_03007 0.14 -1.7
269,880 - MPMX19_03007 0.14 -2.4
269,880 - MPMX19_03007 0.14 -1.1
269,960 + MPMX19_03007 0.19 -0.7
269,961 - MPMX19_03007 0.19 +0.9
270,176 + MPMX19_03007 0.33 +0.4
270,177 - MPMX19_03007 0.33 -1.8
270,177 - MPMX19_03007 0.33 -1.5

Or see this region's nucleotide sequence