Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02931

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02930 and MPMX19_02931 are separated by 156 nucleotidesMPMX19_02931 and MPMX19_02932 overlap by 4 nucleotides MPMX19_02930: MPMX19_02930 - hypothetical protein, at 184,641 to 185,756 _02930 MPMX19_02931: MPMX19_02931 - Linearmycin resistance ATP-binding protein LnrL, at 185,913 to 186,701 _02931 MPMX19_02932: MPMX19_02932 - hypothetical protein, at 186,698 to 187,513 _02932 Position (kb) 185 186 187Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 185.019 kb on + strand, within MPMX19_02930at 185.020 kb on - strand, within MPMX19_02930at 185.020 kb on - strand, within MPMX19_02930at 185.020 kb on - strand, within MPMX19_02930at 185.140 kb on + strand, within MPMX19_02930at 185.263 kb on + strand, within MPMX19_02930at 185.263 kb on + strand, within MPMX19_02930at 185.263 kb on + strand, within MPMX19_02930at 185.263 kb on + strand, within MPMX19_02930at 185.263 kb on + strand, within MPMX19_02930at 185.263 kb on + strand, within MPMX19_02930at 185.263 kb on + strand, within MPMX19_02930at 185.264 kb on - strand, within MPMX19_02930at 185.264 kb on - strand, within MPMX19_02930at 185.264 kb on - strand, within MPMX19_02930at 185.264 kb on - strand, within MPMX19_02930at 185.264 kb on - strand, within MPMX19_02930at 185.362 kb on - strand, within MPMX19_02930at 185.521 kb on + strand, within MPMX19_02930at 185.521 kb on + strand, within MPMX19_02930at 185.521 kb on + strand, within MPMX19_02930at 185.521 kb on + strand, within MPMX19_02930at 185.521 kb on + strand, within MPMX19_02930at 185.521 kb on + strand, within MPMX19_02930at 185.521 kb on + strand, within MPMX19_02930at 185.522 kb on - strand, within MPMX19_02930at 185.522 kb on - strand, within MPMX19_02930at 185.522 kb on - strand, within MPMX19_02930at 185.522 kb on - strand, within MPMX19_02930at 185.522 kb on - strand, within MPMX19_02930at 185.636 kb on + strand, within MPMX19_02930at 185.916 kb on + strandat 185.916 kb on + strandat 185.916 kb on + strandat 185.916 kb on + strandat 185.916 kb on + strandat 185.916 kb on + strandat 185.916 kb on + strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 186.123 kb on + strand, within MPMX19_02931at 186.123 kb on + strand, within MPMX19_02931at 186.124 kb on - strand, within MPMX19_02931at 186.124 kb on - strand, within MPMX19_02931at 186.261 kb on + strand, within MPMX19_02931at 186.262 kb on - strand, within MPMX19_02931at 186.262 kb on - strand, within MPMX19_02931at 186.262 kb on - strand, within MPMX19_02931at 186.394 kb on + strand, within MPMX19_02931at 186.713 kb on + strandat 186.713 kb on + strandat 186.713 kb on + strandat 186.713 kb on + strandat 186.713 kb on + strandat 186.713 kb on + strandat 186.713 kb on + strandat 186.714 kb on - strandat 186.714 kb on - strandat 186.714 kb on - strandat 186.714 kb on - strandat 186.719 kb on + strandat 186.719 kb on + strandat 186.720 kb on - strandat 186.720 kb on - strandat 186.870 kb on - strand, within MPMX19_02932at 186.870 kb on - strand, within MPMX19_02932at 186.878 kb on + strand, within MPMX19_02932at 186.878 kb on + strand, within MPMX19_02932at 186.878 kb on + strand, within MPMX19_02932at 186.878 kb on + strand, within MPMX19_02932at 186.878 kb on + strand, within MPMX19_02932at 186.878 kb on + strand, within MPMX19_02932at 186.878 kb on + strand, within MPMX19_02932at 186.878 kb on + strand, within MPMX19_02932at 186.878 kb on + strand, within MPMX19_02932at 186.878 kb on + strand, within MPMX19_02932at 186.878 kb on + strand, within MPMX19_02932at 186.879 kb on - strand, within MPMX19_02932at 186.879 kb on - strand, within MPMX19_02932at 186.879 kb on - strand, within MPMX19_02932at 186.879 kb on - strand, within MPMX19_02932at 186.879 kb on - strand, within MPMX19_02932at 186.879 kb on - strand, within MPMX19_02932at 186.879 kb on - strand, within MPMX19_02932at 186.879 kb on - strand, within MPMX19_02932at 186.879 kb on - strand, within MPMX19_02932at 186.879 kb on - strand, within MPMX19_02932at 186.879 kb on - strand, within MPMX19_02932at 186.887 kb on + strand, within MPMX19_02932at 186.896 kb on + strand, within MPMX19_02932at 186.896 kb on + strand, within MPMX19_02932at 186.896 kb on + strand, within MPMX19_02932at 186.896 kb on + strand, within MPMX19_02932at 186.896 kb on + strand, within MPMX19_02932at 186.896 kb on + strand, within MPMX19_02932at 186.897 kb on - strand, within MPMX19_02932at 186.897 kb on - strand, within MPMX19_02932at 186.897 kb on - strand, within MPMX19_02932at 186.897 kb on - strand, within MPMX19_02932at 186.897 kb on - strand, within MPMX19_02932at 186.897 kb on - strand, within MPMX19_02932at 186.897 kb on - strand, within MPMX19_02932at 186.897 kb on - strand, within MPMX19_02932at 186.897 kb on - strand, within MPMX19_02932at 186.897 kb on - strand, within MPMX19_02932at 186.897 kb on - strand, within MPMX19_02932at 186.965 kb on + strand, within MPMX19_02932at 186.965 kb on + strand, within MPMX19_02932at 186.965 kb on + strand, within MPMX19_02932at 186.965 kb on + strand, within MPMX19_02932at 186.965 kb on + strand, within MPMX19_02932at 186.966 kb on - strand, within MPMX19_02932at 186.966 kb on - strand, within MPMX19_02932at 186.966 kb on - strand, within MPMX19_02932at 186.966 kb on - strand, within MPMX19_02932at 186.966 kb on - strand, within MPMX19_02932at 186.966 kb on - strand, within MPMX19_02932at 186.966 kb on - strand, within MPMX19_02932at 187.022 kb on + strand, within MPMX19_02932at 187.022 kb on + strand, within MPMX19_02932at 187.022 kb on + strand, within MPMX19_02932at 187.022 kb on + strand, within MPMX19_02932at 187.022 kb on + strand, within MPMX19_02932at 187.023 kb on - strand, within MPMX19_02932at 187.023 kb on - strand, within MPMX19_02932at 187.023 kb on - strand, within MPMX19_02932at 187.023 kb on - strand, within MPMX19_02932at 187.076 kb on + strand, within MPMX19_02932at 187.076 kb on + strand, within MPMX19_02932at 187.076 kb on + strand, within MPMX19_02932at 187.076 kb on + strand, within MPMX19_02932at 187.076 kb on + strand, within MPMX19_02932at 187.076 kb on + strand, within MPMX19_02932at 187.076 kb on + strand, within MPMX19_02932at 187.076 kb on + strand, within MPMX19_02932at 187.076 kb on + strand, within MPMX19_02932at 187.076 kb on + strand, within MPMX19_02932at 187.076 kb on + strand, within MPMX19_02932at 187.076 kb on + strand, within MPMX19_02932at 187.077 kb on - strand, within MPMX19_02932at 187.077 kb on - strand, within MPMX19_02932at 187.077 kb on - strand, within MPMX19_02932at 187.077 kb on - strand, within MPMX19_02932at 187.077 kb on - strand, within MPMX19_02932at 187.077 kb on - strand, within MPMX19_02932at 187.077 kb on - strand, within MPMX19_02932at 187.130 kb on + strand, within MPMX19_02932at 187.131 kb on - strand, within MPMX19_02932at 187.280 kb on + strand, within MPMX19_02932at 187.280 kb on + strand, within MPMX19_02932at 187.280 kb on + strand, within MPMX19_02932at 187.280 kb on + strand, within MPMX19_02932at 187.281 kb on - strand, within MPMX19_02932at 187.319 kb on + strand, within MPMX19_02932at 187.320 kb on - strand, within MPMX19_02932at 187.379 kb on + strand, within MPMX19_02932at 187.379 kb on + strand, within MPMX19_02932at 187.379 kb on + strand, within MPMX19_02932at 187.379 kb on + strand, within MPMX19_02932at 187.379 kb on + strand, within MPMX19_02932at 187.380 kb on - strand, within MPMX19_02932at 187.380 kb on - strand, within MPMX19_02932at 187.380 kb on - strand, within MPMX19_02932at 187.380 kb on - strand, within MPMX19_02932at 187.457 kb on + strandat 187.457 kb on + strandat 187.457 kb on + strandat 187.458 kb on - strandat 187.458 kb on - strandat 187.458 kb on - strandat 187.554 kb on + strandat 187.581 kb on - strandat 187.621 kb on + strandat 187.621 kb on + strandat 187.690 kb on + strandat 187.690 kb on + strandat 187.690 kb on + strandat 187.691 kb on - strandat 187.691 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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185,019 + MPMX19_02930 0.34 +1.1
185,020 - MPMX19_02930 0.34 +0.2
185,020 - MPMX19_02930 0.34 -1.0
185,020 - MPMX19_02930 0.34 -2.4
185,140 + MPMX19_02930 0.45 -0.0
185,263 + MPMX19_02930 0.56 +0.3
185,263 + MPMX19_02930 0.56 -1.3
185,263 + MPMX19_02930 0.56 -1.9
185,263 + MPMX19_02930 0.56 -0.6
185,263 + MPMX19_02930 0.56 +1.0
185,263 + MPMX19_02930 0.56 -0.9
185,263 + MPMX19_02930 0.56 -2.1
185,264 - MPMX19_02930 0.56 -0.1
185,264 - MPMX19_02930 0.56 -2.0
185,264 - MPMX19_02930 0.56 -0.5
185,264 - MPMX19_02930 0.56 +0.5
185,264 - MPMX19_02930 0.56 -1.7
185,362 - MPMX19_02930 0.65 +0.2
185,521 + MPMX19_02930 0.79 -1.3
185,521 + MPMX19_02930 0.79 +1.2
185,521 + MPMX19_02930 0.79 -0.7
185,521 + MPMX19_02930 0.79 +0.3
185,521 + MPMX19_02930 0.79 -0.3
185,521 + MPMX19_02930 0.79 -0.6
185,521 + MPMX19_02930 0.79 -0.2
185,522 - MPMX19_02930 0.79 +0.8
185,522 - MPMX19_02930 0.79 -0.2
185,522 - MPMX19_02930 0.79 +0.5
185,522 - MPMX19_02930 0.79 +1.1
185,522 - MPMX19_02930 0.79 -1.9
185,636 + MPMX19_02930 0.89 -0.5
185,916 + -0.2
185,916 + -0.7
185,916 + -0.9
185,916 + -1.8
185,916 + +0.8
185,916 + +0.6
185,916 + -0.6
185,917 - +0.1
185,917 - -0.7
185,917 - -1.1
185,917 - -1.5
185,917 - -0.4
185,917 - -0.2
185,917 - -0.4
185,917 - -0.7
185,917 - +0.6
185,917 - -3.2
185,917 - +0.2
185,917 - -0.7
185,917 - -0.4
185,917 - -0.8
185,917 - -1.7
186,123 + MPMX19_02931 0.27 -0.0
186,123 + MPMX19_02931 0.27 -2.0
186,124 - MPMX19_02931 0.27 -0.4
186,124 - MPMX19_02931 0.27 +0.2
186,261 + MPMX19_02931 0.44 -1.7
186,262 - MPMX19_02931 0.44 +0.8
186,262 - MPMX19_02931 0.44 -0.1
186,262 - MPMX19_02931 0.44 +0.6
186,394 + MPMX19_02931 0.61 +0.9
186,713 + -2.1
186,713 + -0.3
186,713 + -1.4
186,713 + -0.0
186,713 + +1.1
186,713 + -1.8
186,713 + -1.5
186,714 - -0.7
186,714 - -0.2
186,714 - +0.2
186,714 - -0.1
186,719 + -1.9
186,719 + -0.1
186,720 - +0.6
186,720 - +1.2
186,870 - MPMX19_02932 0.21 +0.6
186,870 - MPMX19_02932 0.21 -1.2
186,878 + MPMX19_02932 0.22 -0.0
186,878 + MPMX19_02932 0.22 -0.6
186,878 + MPMX19_02932 0.22 +0.4
186,878 + MPMX19_02932 0.22 -1.7
186,878 + MPMX19_02932 0.22 +0.3
186,878 + MPMX19_02932 0.22 -1.7
186,878 + MPMX19_02932 0.22 +1.0
186,878 + MPMX19_02932 0.22 -0.4
186,878 + MPMX19_02932 0.22 -0.4
186,878 + MPMX19_02932 0.22 -0.2
186,878 + MPMX19_02932 0.22 +0.9
186,879 - MPMX19_02932 0.22 -0.5
186,879 - MPMX19_02932 0.22 +0.1
186,879 - MPMX19_02932 0.22 -1.8
186,879 - MPMX19_02932 0.22 -0.7
186,879 - MPMX19_02932 0.22 -1.6
186,879 - MPMX19_02932 0.22 -0.8
186,879 - MPMX19_02932 0.22 -0.2
186,879 - MPMX19_02932 0.22 -1.7
186,879 - MPMX19_02932 0.22 +0.2
186,879 - MPMX19_02932 0.22 -1.1
186,879 - MPMX19_02932 0.22 +0.1
186,887 + MPMX19_02932 0.23 -1.2
186,896 + MPMX19_02932 0.24 +0.2
186,896 + MPMX19_02932 0.24 +0.4
186,896 + MPMX19_02932 0.24 -1.7
186,896 + MPMX19_02932 0.24 -0.1
186,896 + MPMX19_02932 0.24 -0.2
186,896 + MPMX19_02932 0.24 +0.2
186,897 - MPMX19_02932 0.24 -0.8
186,897 - MPMX19_02932 0.24 -1.3
186,897 - MPMX19_02932 0.24 +0.6
186,897 - MPMX19_02932 0.24 +1.1
186,897 - MPMX19_02932 0.24 +0.5
186,897 - MPMX19_02932 0.24 -1.2
186,897 - MPMX19_02932 0.24 +0.3
186,897 - MPMX19_02932 0.24 -1.5
186,897 - MPMX19_02932 0.24 -0.9
186,897 - MPMX19_02932 0.24 -0.8
186,897 - MPMX19_02932 0.24 -0.4
186,965 + MPMX19_02932 0.33 +0.6
186,965 + MPMX19_02932 0.33 +0.5
186,965 + MPMX19_02932 0.33 +1.0
186,965 + MPMX19_02932 0.33 -0.6
186,965 + MPMX19_02932 0.33 +0.1
186,966 - MPMX19_02932 0.33 -0.6
186,966 - MPMX19_02932 0.33 -1.0
186,966 - MPMX19_02932 0.33 -1.1
186,966 - MPMX19_02932 0.33 +1.8
186,966 - MPMX19_02932 0.33 -0.1
186,966 - MPMX19_02932 0.33 +0.4
186,966 - MPMX19_02932 0.33 +0.1
187,022 + MPMX19_02932 0.40 -1.3
187,022 + MPMX19_02932 0.40 -0.8
187,022 + MPMX19_02932 0.40 +0.6
187,022 + MPMX19_02932 0.40 -0.4
187,022 + MPMX19_02932 0.40 -0.1
187,023 - MPMX19_02932 0.40 -1.2
187,023 - MPMX19_02932 0.40 +1.1
187,023 - MPMX19_02932 0.40 -0.2
187,023 - MPMX19_02932 0.40 -2.1
187,076 + MPMX19_02932 0.46 +1.3
187,076 + MPMX19_02932 0.46 +0.6
187,076 + MPMX19_02932 0.46 +0.3
187,076 + MPMX19_02932 0.46 -0.5
187,076 + MPMX19_02932 0.46 -0.1
187,076 + MPMX19_02932 0.46 -0.5
187,076 + MPMX19_02932 0.46 +0.1
187,076 + MPMX19_02932 0.46 -1.2
187,076 + MPMX19_02932 0.46 -0.9
187,076 + MPMX19_02932 0.46 -1.0
187,076 + MPMX19_02932 0.46 +0.3
187,076 + MPMX19_02932 0.46 -0.4
187,077 - MPMX19_02932 0.46 +0.8
187,077 - MPMX19_02932 0.46 -0.9
187,077 - MPMX19_02932 0.46 -0.2
187,077 - MPMX19_02932 0.46 +0.2
187,077 - MPMX19_02932 0.46 -0.8
187,077 - MPMX19_02932 0.46 +0.2
187,077 - MPMX19_02932 0.46 -0.3
187,130 + MPMX19_02932 0.53 -1.5
187,131 - MPMX19_02932 0.53 -0.7
187,280 + MPMX19_02932 0.71 -0.5
187,280 + MPMX19_02932 0.71 -1.6
187,280 + MPMX19_02932 0.71 +2.2
187,280 + MPMX19_02932 0.71 -0.7
187,281 - MPMX19_02932 0.71 +0.2
187,319 + MPMX19_02932 0.76 -0.9
187,320 - MPMX19_02932 0.76 -0.4
187,379 + MPMX19_02932 0.83 -1.1
187,379 + MPMX19_02932 0.83 +0.6
187,379 + MPMX19_02932 0.83 +0.1
187,379 + MPMX19_02932 0.83 -1.7
187,379 + MPMX19_02932 0.83 -0.6
187,380 - MPMX19_02932 0.84 +0.3
187,380 - MPMX19_02932 0.84 +0.8
187,380 - MPMX19_02932 0.84 -0.9
187,380 - MPMX19_02932 0.84 -0.5
187,457 + -0.4
187,457 + -1.7
187,457 + -0.5
187,458 - +0.1
187,458 - -0.4
187,458 - -0.9
187,554 + -1.6
187,581 - -1.2
187,621 + -0.7
187,621 + -1.5
187,690 + +0.4
187,690 + -0.2
187,690 + -0.7
187,691 - -1.4
187,691 - +0.1

Or see this region's nucleotide sequence