Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02916

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02914 and MPMX19_02915 are separated by 11 nucleotidesMPMX19_02915 and MPMX19_02916 overlap by 4 nucleotidesMPMX19_02916 and MPMX19_02917 overlap by 4 nucleotidesMPMX19_02917 and MPMX19_02918 overlap by 4 nucleotides MPMX19_02914: MPMX19_02914 - hypothetical protein, at 168,285 to 169,109 _02914 MPMX19_02915: MPMX19_02915 - hypothetical protein, at 169,121 to 170,047 _02915 MPMX19_02916: MPMX19_02916 - hypothetical protein, at 170,044 to 170,898 _02916 MPMX19_02917: MPMX19_02917 - Methenyltetrahydromethanopterin cyclohydrolase, at 170,895 to 171,899 _02917 MPMX19_02918: MPMX19_02918 - NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase, at 171,896 to 172,804 _02918 Position (kb) 170 171Strain fitness (log2 ratio) -2 -1 0 1at 169.122 kb on + strandat 169.122 kb on + strandat 169.122 kb on + strandat 169.122 kb on + strandat 169.123 kb on - strandat 169.123 kb on - strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.288 kb on - strand, within MPMX19_02915at 169.644 kb on + strand, within MPMX19_02915at 169.644 kb on + strand, within MPMX19_02915at 169.645 kb on - strand, within MPMX19_02915at 169.645 kb on - strand, within MPMX19_02915at 169.645 kb on - strand, within MPMX19_02915at 170.006 kb on + strandat 170.006 kb on + strandat 170.006 kb on + strandat 170.006 kb on + strandat 170.006 kb on + strandat 170.007 kb on - strandat 170.007 kb on - strandat 170.007 kb on - strandat 170.318 kb on + strand, within MPMX19_02916at 170.319 kb on - strand, within MPMX19_02916at 170.319 kb on - strand, within MPMX19_02916at 170.380 kb on + strand, within MPMX19_02916at 170.380 kb on + strand, within MPMX19_02916at 170.380 kb on + strand, within MPMX19_02916at 170.380 kb on + strand, within MPMX19_02916at 170.381 kb on - strand, within MPMX19_02916at 170.381 kb on - strand, within MPMX19_02916at 170.412 kb on - strand, within MPMX19_02916at 171.040 kb on + strand, within MPMX19_02917at 171.040 kb on + strand, within MPMX19_02917at 171.040 kb on + strand, within MPMX19_02917at 171.040 kb on + strand, within MPMX19_02917at 171.040 kb on + strand, within MPMX19_02917at 171.040 kb on + strand, within MPMX19_02917at 171.040 kb on + strand, within MPMX19_02917at 171.041 kb on - strand, within MPMX19_02917at 171.041 kb on - strand, within MPMX19_02917at 171.041 kb on - strand, within MPMX19_02917at 171.041 kb on - strand, within MPMX19_02917at 171.041 kb on - strand, within MPMX19_02917at 171.041 kb on - strand, within MPMX19_02917at 171.487 kb on + strand, within MPMX19_02917at 171.488 kb on - strand, within MPMX19_02917at 171.488 kb on - strand, within MPMX19_02917at 171.598 kb on + strand, within MPMX19_02917at 171.598 kb on + strand, within MPMX19_02917at 171.598 kb on + strand, within MPMX19_02917at 171.598 kb on + strand, within MPMX19_02917at 171.598 kb on + strand, within MPMX19_02917at 171.599 kb on - strand, within MPMX19_02917at 171.599 kb on - strand, within MPMX19_02917

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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169,122 + -0.7
169,122 + -0.4
169,122 + -0.6
169,122 + -1.7
169,123 - +0.1
169,123 - -0.4
169,170 + +1.3
169,170 + -1.5
169,170 + +0.7
169,170 + -0.7
169,170 + -1.4
169,170 + +0.3
169,170 + -0.1
169,170 + -0.4
169,170 + -0.7
169,170 + -2.1
169,170 + -0.1
169,170 + -1.1
169,171 - -1.4
169,171 - -0.9
169,171 - -1.1
169,171 - +0.3
169,171 - -1.0
169,171 - +1.0
169,171 - -0.2
169,171 - +0.8
169,171 - -1.0
169,171 - -1.2
169,171 - -2.2
169,171 - -0.9
169,171 - -1.2
169,171 - +0.3
169,171 - -1.0
169,171 - +0.1
169,171 - -0.7
169,171 - -1.3
169,288 - MPMX19_02915 0.18 -0.4
169,644 + MPMX19_02915 0.56 -0.6
169,644 + MPMX19_02915 0.56 -1.9
169,645 - MPMX19_02915 0.57 -0.7
169,645 - MPMX19_02915 0.57 +0.1
169,645 - MPMX19_02915 0.57 +0.5
170,006 + -1.7
170,006 + -1.9
170,006 + -0.4
170,006 + +0.1
170,006 + -0.8
170,007 - +0.4
170,007 - -0.4
170,007 - -0.3
170,318 + MPMX19_02916 0.32 -0.5
170,319 - MPMX19_02916 0.32 -0.4
170,319 - MPMX19_02916 0.32 -0.6
170,380 + MPMX19_02916 0.39 -0.2
170,380 + MPMX19_02916 0.39 +0.2
170,380 + MPMX19_02916 0.39 -0.8
170,380 + MPMX19_02916 0.39 -0.5
170,381 - MPMX19_02916 0.39 -1.4
170,381 - MPMX19_02916 0.39 +0.3
170,412 - MPMX19_02916 0.43 -0.4
171,040 + MPMX19_02917 0.14 +1.6
171,040 + MPMX19_02917 0.14 -0.9
171,040 + MPMX19_02917 0.14 -0.4
171,040 + MPMX19_02917 0.14 +0.5
171,040 + MPMX19_02917 0.14 -0.2
171,040 + MPMX19_02917 0.14 +0.2
171,040 + MPMX19_02917 0.14 -1.6
171,041 - MPMX19_02917 0.15 +0.1
171,041 - MPMX19_02917 0.15 -1.8
171,041 - MPMX19_02917 0.15 +0.3
171,041 - MPMX19_02917 0.15 +0.4
171,041 - MPMX19_02917 0.15 -0.5
171,041 - MPMX19_02917 0.15 -1.7
171,487 + MPMX19_02917 0.59 -0.4
171,488 - MPMX19_02917 0.59 +0.4
171,488 - MPMX19_02917 0.59 -2.3
171,598 + MPMX19_02917 0.70 -0.2
171,598 + MPMX19_02917 0.70 -0.1
171,598 + MPMX19_02917 0.70 +1.3
171,598 + MPMX19_02917 0.70 -1.2
171,598 + MPMX19_02917 0.70 +0.2
171,599 - MPMX19_02917 0.70 -0.8
171,599 - MPMX19_02917 0.70 +1.2

Or see this region's nucleotide sequence