Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02898 and MPMX19_02899 are separated by 505 nucleotides MPMX19_02899 and MPMX19_02900 overlap by 4 nucleotides
MPMX19_02898: MPMX19_02898 - hypothetical protein, at 152,947 to 154,317
_02898
MPMX19_02899: MPMX19_02899 - hypothetical protein, at 154,823 to 155,476
_02899
MPMX19_02900: MPMX19_02900 - hypothetical protein, at 155,473 to 158,457
_02900
Position (kb) 154
155
156 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 153.852 kb on - strand, within MPMX19_02898 at 153.868 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.888 kb on - strand, within MPMX19_02898 at 153.888 kb on - strand, within MPMX19_02898 at 153.944 kb on + strand, within MPMX19_02898 at 153.944 kb on + strand, within MPMX19_02898 at 153.945 kb on - strand, within MPMX19_02898 at 154.026 kb on + strand, within MPMX19_02898 at 154.060 kb on + strand, within MPMX19_02898 at 154.060 kb on + strand, within MPMX19_02898 at 154.060 kb on + strand, within MPMX19_02898 at 154.061 kb on - strand, within MPMX19_02898 at 154.098 kb on - strand, within MPMX19_02898 at 154.098 kb on - strand, within MPMX19_02898 at 154.112 kb on + strand, within MPMX19_02898 at 154.112 kb on + strand, within MPMX19_02898 at 154.112 kb on + strand, within MPMX19_02898 at 154.197 kb on + strand at 154.197 kb on + strand at 154.197 kb on + strand at 154.198 kb on - strand at 154.198 kb on - strand at 154.198 kb on - strand at 154.198 kb on - strand at 154.383 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.454 kb on - strand at 154.454 kb on - strand at 154.454 kb on - strand at 154.454 kb on - strand at 154.454 kb on - strand at 154.454 kb on - strand at 154.493 kb on + strand at 154.494 kb on - strand at 154.494 kb on - strand at 154.610 kb on + strand at 154.610 kb on + strand at 154.611 kb on - strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 155.032 kb on + strand, within MPMX19_02899 at 155.032 kb on + strand, within MPMX19_02899 at 155.032 kb on + strand, within MPMX19_02899 at 155.032 kb on + strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.195 kb on + strand, within MPMX19_02899 at 155.195 kb on + strand, within MPMX19_02899 at 155.196 kb on - strand, within MPMX19_02899 at 155.196 kb on - strand, within MPMX19_02899 at 155.196 kb on - strand, within MPMX19_02899 at 155.196 kb on - strand, within MPMX19_02899 at 155.749 kb on + strand at 155.749 kb on + strand at 155.749 kb on + strand at 155.750 kb on - strand at 155.822 kb on - strand, within MPMX19_02900 at 155.944 kb on + strand, within MPMX19_02900 at 155.944 kb on + strand, within MPMX19_02900 at 155.944 kb on + strand, within MPMX19_02900 at 155.945 kb on - strand, within MPMX19_02900 at 155.945 kb on - strand, within MPMX19_02900 at 156.301 kb on + strand, within MPMX19_02900 at 156.302 kb on - strand, within MPMX19_02900 at 156.370 kb on + strand, within MPMX19_02900 at 156.370 kb on + strand, within MPMX19_02900 at 156.371 kb on - strand, within MPMX19_02900 at 156.371 kb on - strand, within MPMX19_02900 at 156.443 kb on + strand, within MPMX19_02900 at 156.443 kb on + strand, within MPMX19_02900 at 156.444 kb on - strand, within MPMX19_02900 at 156.444 kb on - strand, within MPMX19_02900 at 156.444 kb on - strand, within MPMX19_02900
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 153,852 - MPMX19_02898 0.66 +0.3 153,868 + MPMX19_02898 0.67 -0.9 153,887 + MPMX19_02898 0.69 -1.0 153,887 + MPMX19_02898 0.69 -1.4 153,887 + MPMX19_02898 0.69 -0.4 153,887 + MPMX19_02898 0.69 -0.1 153,887 + MPMX19_02898 0.69 -0.5 153,887 + MPMX19_02898 0.69 -1.4 153,887 + MPMX19_02898 0.69 -0.3 153,887 + MPMX19_02898 0.69 +0.1 153,888 - MPMX19_02898 0.69 -0.4 153,888 - MPMX19_02898 0.69 -0.1 153,944 + MPMX19_02898 0.73 -1.6 153,944 + MPMX19_02898 0.73 +0.4 153,945 - MPMX19_02898 0.73 +0.1 154,026 + MPMX19_02898 0.79 -0.4 154,060 + MPMX19_02898 0.81 +0.3 154,060 + MPMX19_02898 0.81 -0.5 154,060 + MPMX19_02898 0.81 -0.0 154,061 - MPMX19_02898 0.81 +0.1 154,098 - MPMX19_02898 0.84 -1.2 154,098 - MPMX19_02898 0.84 +0.2 154,112 + MPMX19_02898 0.85 -0.1 154,112 + MPMX19_02898 0.85 +0.8 154,112 + MPMX19_02898 0.85 -0.3 154,197 + +0.3 154,197 + +0.6 154,197 + -1.2 154,198 - +0.6 154,198 - +0.2 154,198 - +1.5 154,198 - +0.5 154,383 + -0.2 154,453 + -0.9 154,453 + -0.4 154,453 + -2.9 154,453 + +0.1 154,453 + -0.5 154,453 + -1.7 154,453 + +1.3 154,453 + +0.5 154,454 - -1.7 154,454 - +0.4 154,454 - -1.7 154,454 - +1.6 154,454 - +0.1 154,454 - -1.4 154,493 + +0.3 154,494 - +1.8 154,494 - +0.8 154,610 + +0.3 154,610 + -0.4 154,611 - +0.2 154,874 + +0.1 154,874 + +0.7 154,874 + +1.9 154,874 + +0.7 154,874 + -0.3 154,874 + +1.1 154,874 + +0.8 154,874 + +0.1 154,874 + -1.4 154,874 + +0.3 154,875 - -1.2 154,875 - +0.4 154,875 - -0.7 154,875 - -2.1 154,875 - +0.2 154,875 - -0.5 154,875 - -0.4 154,875 - +0.4 154,875 - +0.5 154,875 - -0.2 154,937 + MPMX19_02899 0.17 -0.7 154,937 + MPMX19_02899 0.17 -0.9 154,937 + MPMX19_02899 0.17 +1.1 154,937 + MPMX19_02899 0.17 -1.4 154,937 + MPMX19_02899 0.17 -0.0 154,937 + MPMX19_02899 0.17 -1.3 154,937 + MPMX19_02899 0.17 -2.1 154,937 + MPMX19_02899 0.17 -0.9 154,937 + MPMX19_02899 0.17 -0.4 154,938 - MPMX19_02899 0.18 -0.2 154,938 - MPMX19_02899 0.18 -0.5 154,938 - MPMX19_02899 0.18 -1.2 154,938 - MPMX19_02899 0.18 +0.7 154,938 - MPMX19_02899 0.18 +1.0 154,938 - MPMX19_02899 0.18 +0.2 154,938 - MPMX19_02899 0.18 -0.2 154,938 - MPMX19_02899 0.18 -0.4 155,032 + MPMX19_02899 0.32 +0.1 155,032 + MPMX19_02899 0.32 -0.5 155,032 + MPMX19_02899 0.32 +1.1 155,032 + MPMX19_02899 0.32 -1.7 155,033 - MPMX19_02899 0.32 +0.1 155,033 - MPMX19_02899 0.32 -0.6 155,033 - MPMX19_02899 0.32 -1.5 155,033 - MPMX19_02899 0.32 -1.1 155,033 - MPMX19_02899 0.32 -1.1 155,033 - MPMX19_02899 0.32 -2.1 155,033 - MPMX19_02899 0.32 -0.2 155,195 + MPMX19_02899 0.57 -2.7 155,195 + MPMX19_02899 0.57 -0.9 155,196 - MPMX19_02899 0.57 -0.7 155,196 - MPMX19_02899 0.57 +0.0 155,196 - MPMX19_02899 0.57 -0.2 155,196 - MPMX19_02899 0.57 -2.3 155,749 + -0.6 155,749 + -0.3 155,749 + +0.7 155,750 - -2.3 155,822 - MPMX19_02900 0.12 -1.7 155,944 + MPMX19_02900 0.16 -0.4 155,944 + MPMX19_02900 0.16 -0.8 155,944 + MPMX19_02900 0.16 -0.4 155,945 - MPMX19_02900 0.16 -0.1 155,945 - MPMX19_02900 0.16 -0.9 156,301 + MPMX19_02900 0.28 -0.7 156,302 - MPMX19_02900 0.28 -1.5 156,370 + MPMX19_02900 0.30 -1.1 156,370 + MPMX19_02900 0.30 -1.2 156,371 - MPMX19_02900 0.30 -1.6 156,371 - MPMX19_02900 0.30 -1.2 156,443 + MPMX19_02900 0.32 -1.3 156,443 + MPMX19_02900 0.32 -2.2 156,444 - MPMX19_02900 0.33 +0.4 156,444 - MPMX19_02900 0.33 -2.5 156,444 - MPMX19_02900 0.33 +0.8
Or see this region's nucleotide sequence