Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02836

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02834 and MPMX19_02835 overlap by 4 nucleotidesMPMX19_02835 and MPMX19_02836 overlap by 14 nucleotidesMPMX19_02836 and MPMX19_02837 are separated by 3 nucleotidesMPMX19_02837 and MPMX19_02838 overlap by 4 nucleotides MPMX19_02834: MPMX19_02834 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase, at 75,985 to 76,860 _02834 MPMX19_02835: MPMX19_02835 - Phosphoribosyl-dephospho-CoA transferase, at 76,857 to 77,525 _02835 MPMX19_02836: MPMX19_02836 - hypothetical protein, at 77,512 to 78,216 _02836 MPMX19_02837: MPMX19_02837 - Malonyl-S-ACP:biotin-protein carboxyltransferase MADC, at 78,220 to 79,107 _02837 MPMX19_02838: MPMX19_02838 - Malonate decarboxylase acyl carrier protein, at 79,104 to 79,424 _02838 Position (kb) 77 78 79Strain fitness (log2 ratio) -2 -1 0 1 2at 76.652 kb on + strand, within MPMX19_02834at 76.652 kb on + strand, within MPMX19_02834at 76.652 kb on + strand, within MPMX19_02834at 76.652 kb on + strand, within MPMX19_02834at 76.653 kb on - strand, within MPMX19_02834at 76.653 kb on - strand, within MPMX19_02834at 76.766 kb on + strand, within MPMX19_02834at 76.766 kb on + strand, within MPMX19_02834at 76.767 kb on - strand, within MPMX19_02834at 76.767 kb on - strand, within MPMX19_02834at 76.767 kb on - strand, within MPMX19_02834at 76.767 kb on - strand, within MPMX19_02834at 77.119 kb on + strand, within MPMX19_02835at 77.119 kb on + strand, within MPMX19_02835at 77.119 kb on + strand, within MPMX19_02835at 77.119 kb on + strand, within MPMX19_02835at 77.120 kb on - strand, within MPMX19_02835at 77.120 kb on - strand, within MPMX19_02835at 77.120 kb on - strand, within MPMX19_02835at 77.120 kb on - strand, within MPMX19_02835at 77.158 kb on + strand, within MPMX19_02835at 77.159 kb on - strand, within MPMX19_02835at 77.159 kb on - strand, within MPMX19_02835at 77.159 kb on - strand, within MPMX19_02835at 77.684 kb on + strand, within MPMX19_02836at 77.685 kb on - strand, within MPMX19_02836at 77.685 kb on - strand, within MPMX19_02836at 77.685 kb on - strand, within MPMX19_02836at 77.685 kb on - strand, within MPMX19_02836at 77.685 kb on - strand, within MPMX19_02836at 77.813 kb on + strand, within MPMX19_02836at 77.813 kb on + strand, within MPMX19_02836at 77.814 kb on - strand, within MPMX19_02836at 77.814 kb on - strand, within MPMX19_02836at 77.814 kb on - strand, within MPMX19_02836at 77.814 kb on - strand, within MPMX19_02836at 77.814 kb on - strand, within MPMX19_02836at 77.814 kb on - strand, within MPMX19_02836at 77.870 kb on + strand, within MPMX19_02836at 77.870 kb on + strand, within MPMX19_02836at 77.870 kb on + strand, within MPMX19_02836at 77.870 kb on + strand, within MPMX19_02836at 77.871 kb on - strand, within MPMX19_02836at 77.939 kb on + strand, within MPMX19_02836at 77.939 kb on + strand, within MPMX19_02836at 77.939 kb on + strand, within MPMX19_02836at 77.939 kb on + strand, within MPMX19_02836at 77.940 kb on - strand, within MPMX19_02836at 77.940 kb on - strand, within MPMX19_02836at 77.940 kb on - strand, within MPMX19_02836at 78.149 kb on + strandat 78.149 kb on + strandat 78.149 kb on + strandat 78.149 kb on + strandat 78.149 kb on + strandat 78.497 kb on + strand, within MPMX19_02837at 78.498 kb on - strand, within MPMX19_02837at 78.498 kb on - strand, within MPMX19_02837at 78.498 kb on - strand, within MPMX19_02837at 79.094 kb on + strandat 79.095 kb on - strandat 79.095 kb on - strandat 79.097 kb on + strandat 79.097 kb on + strandat 79.097 kb on + strandat 79.097 kb on + strandat 79.097 kb on + strandat 79.097 kb on + strandat 79.097 kb on + strandat 79.097 kb on + strandat 79.098 kb on - strandat 79.098 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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76,652 + MPMX19_02834 0.76 -1.4
76,652 + MPMX19_02834 0.76 -0.9
76,652 + MPMX19_02834 0.76 -1.4
76,652 + MPMX19_02834 0.76 -0.1
76,653 - MPMX19_02834 0.76 -0.9
76,653 - MPMX19_02834 0.76 +0.5
76,766 + MPMX19_02834 0.89 -0.9
76,766 + MPMX19_02834 0.89 -1.4
76,767 - MPMX19_02834 0.89 -0.1
76,767 - MPMX19_02834 0.89 +0.8
76,767 - MPMX19_02834 0.89 -0.9
76,767 - MPMX19_02834 0.89 -0.1
77,119 + MPMX19_02835 0.39 -0.5
77,119 + MPMX19_02835 0.39 +0.6
77,119 + MPMX19_02835 0.39 -2.4
77,119 + MPMX19_02835 0.39 -0.2
77,120 - MPMX19_02835 0.39 +0.1
77,120 - MPMX19_02835 0.39 +0.2
77,120 - MPMX19_02835 0.39 -1.2
77,120 - MPMX19_02835 0.39 -0.1
77,158 + MPMX19_02835 0.45 -1.5
77,159 - MPMX19_02835 0.45 -1.4
77,159 - MPMX19_02835 0.45 -0.5
77,159 - MPMX19_02835 0.45 +0.6
77,684 + MPMX19_02836 0.24 -0.8
77,685 - MPMX19_02836 0.25 -0.3
77,685 - MPMX19_02836 0.25 -0.5
77,685 - MPMX19_02836 0.25 +0.2
77,685 - MPMX19_02836 0.25 -0.4
77,685 - MPMX19_02836 0.25 -1.2
77,813 + MPMX19_02836 0.43 -2.3
77,813 + MPMX19_02836 0.43 +0.6
77,814 - MPMX19_02836 0.43 -0.9
77,814 - MPMX19_02836 0.43 -0.9
77,814 - MPMX19_02836 0.43 -1.9
77,814 - MPMX19_02836 0.43 -0.6
77,814 - MPMX19_02836 0.43 -0.6
77,814 - MPMX19_02836 0.43 -0.2
77,870 + MPMX19_02836 0.51 +0.2
77,870 + MPMX19_02836 0.51 -0.9
77,870 + MPMX19_02836 0.51 +0.6
77,870 + MPMX19_02836 0.51 -1.8
77,871 - MPMX19_02836 0.51 -0.9
77,939 + MPMX19_02836 0.61 -1.4
77,939 + MPMX19_02836 0.61 -0.4
77,939 + MPMX19_02836 0.61 -0.9
77,939 + MPMX19_02836 0.61 -2.1
77,940 - MPMX19_02836 0.61 -0.3
77,940 - MPMX19_02836 0.61 -0.0
77,940 - MPMX19_02836 0.61 +0.6
78,149 + +0.4
78,149 + +0.2
78,149 + +0.3
78,149 + +2.4
78,149 + +0.6
78,497 + MPMX19_02837 0.31 +0.5
78,498 - MPMX19_02837 0.31 +0.8
78,498 - MPMX19_02837 0.31 -0.2
78,498 - MPMX19_02837 0.31 -0.7
79,094 + -0.7
79,095 - -0.2
79,095 - -0.6
79,097 + -0.1
79,097 + -1.3
79,097 + -0.7
79,097 + +0.1
79,097 + -1.5
79,097 + +0.6
79,097 + +0.6
79,097 + -0.8
79,098 - +0.4
79,098 - -1.1

Or see this region's nucleotide sequence