Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02833

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02831 and MPMX19_02832 overlap by 4 nucleotidesMPMX19_02832 and MPMX19_02833 are separated by 8 nucleotidesMPMX19_02833 and MPMX19_02834 overlap by 4 nucleotidesMPMX19_02834 and MPMX19_02835 overlap by 4 nucleotides MPMX19_02831: MPMX19_02831 - Acetylpolyamine amidohydrolase, at 73,093 to 74,157 _02831 MPMX19_02832: MPMX19_02832 - putative cystine transporter YijE, at 74,154 to 75,062 _02832 MPMX19_02833: MPMX19_02833 - Polyketide biosynthesis malonyl CoA-acyl carrier protein transacylase PksC, at 75,071 to 75,988 _02833 MPMX19_02834: MPMX19_02834 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase, at 75,985 to 76,860 _02834 MPMX19_02835: MPMX19_02835 - Phosphoribosyl-dephospho-CoA transferase, at 76,857 to 77,525 _02835 Position (kb) 75 76Strain fitness (log2 ratio) -2 -1 0 1at 74.200 kb on - strandat 74.200 kb on - strandat 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.877 kb on + strand, within MPMX19_02832at 74.877 kb on + strand, within MPMX19_02832at 74.877 kb on + strand, within MPMX19_02832at 74.877 kb on + strand, within MPMX19_02832at 74.877 kb on + strand, within MPMX19_02832at 74.877 kb on + strand, within MPMX19_02832at 74.877 kb on + strand, within MPMX19_02832at 74.877 kb on + strand, within MPMX19_02832at 74.878 kb on - strand, within MPMX19_02832at 74.878 kb on - strand, within MPMX19_02832at 74.878 kb on - strand, within MPMX19_02832at 75.066 kb on + strandat 75.066 kb on + strandat 75.067 kb on - strandat 75.067 kb on - strandat 75.067 kb on - strandat 75.306 kb on + strand, within MPMX19_02833at 75.306 kb on + strand, within MPMX19_02833at 75.306 kb on + strand, within MPMX19_02833at 75.306 kb on + strand, within MPMX19_02833at 75.307 kb on - strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.668 kb on + strand, within MPMX19_02833at 75.669 kb on - strand, within MPMX19_02833at 76.652 kb on + strand, within MPMX19_02834at 76.652 kb on + strand, within MPMX19_02834at 76.652 kb on + strand, within MPMX19_02834at 76.652 kb on + strand, within MPMX19_02834at 76.653 kb on - strand, within MPMX19_02834at 76.653 kb on - strand, within MPMX19_02834at 76.766 kb on + strand, within MPMX19_02834at 76.766 kb on + strand, within MPMX19_02834at 76.767 kb on - strand, within MPMX19_02834at 76.767 kb on - strand, within MPMX19_02834at 76.767 kb on - strand, within MPMX19_02834at 76.767 kb on - strand, within MPMX19_02834

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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74,200 - -0.5
74,200 - -2.0
74,739 + MPMX19_02832 0.64 +0.2
74,739 + MPMX19_02832 0.64 -0.2
74,739 + MPMX19_02832 0.64 -1.1
74,739 + MPMX19_02832 0.64 +0.4
74,739 + MPMX19_02832 0.64 +0.3
74,739 + MPMX19_02832 0.64 +1.1
74,739 + MPMX19_02832 0.64 -2.4
74,739 + MPMX19_02832 0.64 -0.1
74,739 + MPMX19_02832 0.64 -1.4
74,739 + MPMX19_02832 0.64 +0.8
74,739 + MPMX19_02832 0.64 -1.4
74,739 + MPMX19_02832 0.64 +0.1
74,739 + MPMX19_02832 0.64 -0.4
74,739 + MPMX19_02832 0.64 -0.2
74,740 - MPMX19_02832 0.64 -2.2
74,740 - MPMX19_02832 0.64 -0.4
74,740 - MPMX19_02832 0.64 +1.3
74,740 - MPMX19_02832 0.64 +0.6
74,740 - MPMX19_02832 0.64 -1.1
74,740 - MPMX19_02832 0.64 -1.1
74,740 - MPMX19_02832 0.64 +0.3
74,740 - MPMX19_02832 0.64 +0.1
74,740 - MPMX19_02832 0.64 +0.3
74,877 + MPMX19_02832 0.80 +0.0
74,877 + MPMX19_02832 0.80 -0.1
74,877 + MPMX19_02832 0.80 +0.8
74,877 + MPMX19_02832 0.80 +1.0
74,877 + MPMX19_02832 0.80 +1.0
74,877 + MPMX19_02832 0.80 -0.0
74,877 + MPMX19_02832 0.80 -0.2
74,877 + MPMX19_02832 0.80 +0.3
74,878 - MPMX19_02832 0.80 +0.1
74,878 - MPMX19_02832 0.80 +0.9
74,878 - MPMX19_02832 0.80 -0.1
75,066 + +1.6
75,066 + -0.5
75,067 - +0.2
75,067 - +0.1
75,067 - -1.4
75,306 + MPMX19_02833 0.26 +1.6
75,306 + MPMX19_02833 0.26 -0.4
75,306 + MPMX19_02833 0.26 +0.0
75,306 + MPMX19_02833 0.26 +0.1
75,307 - MPMX19_02833 0.26 -1.6
75,499 + MPMX19_02833 0.47 +0.1
75,499 + MPMX19_02833 0.47 -0.9
75,499 + MPMX19_02833 0.47 -0.6
75,499 + MPMX19_02833 0.47 +0.1
75,499 + MPMX19_02833 0.47 +0.1
75,499 + MPMX19_02833 0.47 -2.2
75,499 + MPMX19_02833 0.47 +0.4
75,499 + MPMX19_02833 0.47 -0.6
75,499 + MPMX19_02833 0.47 +0.8
75,499 + MPMX19_02833 0.47 -2.1
75,499 + MPMX19_02833 0.47 -1.7
75,499 + MPMX19_02833 0.47 -0.2
75,500 - MPMX19_02833 0.47 +1.1
75,500 - MPMX19_02833 0.47 -0.7
75,500 - MPMX19_02833 0.47 -0.5
75,500 - MPMX19_02833 0.47 +0.2
75,500 - MPMX19_02833 0.47 -0.9
75,500 - MPMX19_02833 0.47 -0.9
75,500 - MPMX19_02833 0.47 -1.2
75,500 - MPMX19_02833 0.47 +0.6
75,500 - MPMX19_02833 0.47 -0.4
75,668 + MPMX19_02833 0.65 -0.6
75,669 - MPMX19_02833 0.65 +0.5
76,652 + MPMX19_02834 0.76 -1.4
76,652 + MPMX19_02834 0.76 -0.9
76,652 + MPMX19_02834 0.76 -1.4
76,652 + MPMX19_02834 0.76 -0.1
76,653 - MPMX19_02834 0.76 -0.9
76,653 - MPMX19_02834 0.76 +0.5
76,766 + MPMX19_02834 0.89 -0.9
76,766 + MPMX19_02834 0.89 -1.4
76,767 - MPMX19_02834 0.89 -0.1
76,767 - MPMX19_02834 0.89 +0.8
76,767 - MPMX19_02834 0.89 -0.9
76,767 - MPMX19_02834 0.89 -0.1

Or see this region's nucleotide sequence