Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02830

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02829 and MPMX19_02830 are separated by 52 nucleotidesMPMX19_02830 and MPMX19_02831 are separated by 28 nucleotides MPMX19_02829: MPMX19_02829 - 2-dehydropantoate 2-reductase, at 70,790 to 71,770 _02829 MPMX19_02830: MPMX19_02830 - N-carbamoyl-L-amino-acid hydrolase, at 71,823 to 73,064 _02830 MPMX19_02831: MPMX19_02831 - Acetylpolyamine amidohydrolase, at 73,093 to 74,157 _02831 Position (kb) 71 72 73 74Strain fitness (log2 ratio) -2 -1 0 1 2at 71.085 kb on + strand, within MPMX19_02829at 71.086 kb on - strand, within MPMX19_02829at 71.095 kb on + strand, within MPMX19_02829at 71.314 kb on + strand, within MPMX19_02829at 71.314 kb on + strand, within MPMX19_02829at 71.314 kb on + strand, within MPMX19_02829at 71.314 kb on + strand, within MPMX19_02829at 71.624 kb on + strand, within MPMX19_02829at 71.624 kb on + strand, within MPMX19_02829at 71.624 kb on + strand, within MPMX19_02829at 71.624 kb on + strand, within MPMX19_02829at 71.624 kb on + strand, within MPMX19_02829at 71.624 kb on + strand, within MPMX19_02829at 71.624 kb on + strand, within MPMX19_02829at 71.625 kb on - strand, within MPMX19_02829at 71.625 kb on - strand, within MPMX19_02829at 71.625 kb on - strand, within MPMX19_02829at 71.625 kb on - strand, within MPMX19_02829at 71.625 kb on - strand, within MPMX19_02829at 71.625 kb on - strand, within MPMX19_02829at 71.625 kb on - strand, within MPMX19_02829at 71.625 kb on - strand, within MPMX19_02829at 71.739 kb on + strandat 71.740 kb on - strandat 72.346 kb on - strand, within MPMX19_02830at 72.384 kb on + strand, within MPMX19_02830at 72.384 kb on + strand, within MPMX19_02830at 72.384 kb on + strand, within MPMX19_02830at 72.385 kb on - strand, within MPMX19_02830at 72.385 kb on - strand, within MPMX19_02830at 72.474 kb on + strand, within MPMX19_02830at 72.475 kb on - strand, within MPMX19_02830at 72.912 kb on + strand, within MPMX19_02830at 72.912 kb on + strand, within MPMX19_02830at 72.912 kb on + strand, within MPMX19_02830at 72.912 kb on + strand, within MPMX19_02830at 72.912 kb on + strand, within MPMX19_02830at 72.912 kb on + strand, within MPMX19_02830at 72.912 kb on + strand, within MPMX19_02830at 72.912 kb on + strand, within MPMX19_02830at 72.912 kb on + strand, within MPMX19_02830at 72.913 kb on - strand, within MPMX19_02830at 72.913 kb on - strand, within MPMX19_02830at 72.913 kb on - strand, within MPMX19_02830at 72.913 kb on - strand, within MPMX19_02830at 72.913 kb on - strand, within MPMX19_02830at 72.913 kb on - strand, within MPMX19_02830at 72.913 kb on - strand, within MPMX19_02830at 72.913 kb on - strand, within MPMX19_02830at 72.913 kb on - strand, within MPMX19_02830at 73.141 kb on + strandat 73.141 kb on + strandat 73.141 kb on + strandat 73.141 kb on + strandat 73.142 kb on - strandat 73.142 kb on - strandat 73.142 kb on - strandat 73.142 kb on - strandat 73.142 kb on - strandat 73.249 kb on + strand, within MPMX19_02831at 73.289 kb on - strand, within MPMX19_02831at 73.289 kb on - strand, within MPMX19_02831at 73.540 kb on + strand, within MPMX19_02831at 73.540 kb on + strand, within MPMX19_02831at 73.540 kb on + strand, within MPMX19_02831at 73.541 kb on - strand, within MPMX19_02831at 73.581 kb on + strand, within MPMX19_02831at 73.600 kb on + strand, within MPMX19_02831at 73.600 kb on + strand, within MPMX19_02831at 73.600 kb on + strand, within MPMX19_02831at 73.601 kb on - strand, within MPMX19_02831at 73.601 kb on - strand, within MPMX19_02831at 73.601 kb on - strand, within MPMX19_02831at 73.726 kb on + strand, within MPMX19_02831at 73.726 kb on + strand, within MPMX19_02831at 73.726 kb on + strand, within MPMX19_02831at 73.727 kb on - strand, within MPMX19_02831at 73.727 kb on - strand, within MPMX19_02831at 73.727 kb on - strand, within MPMX19_02831at 73.727 kb on - strand, within MPMX19_02831at 73.727 kb on - strand, within MPMX19_02831at 73.727 kb on - strand, within MPMX19_02831at 73.727 kb on - strand, within MPMX19_02831at 73.780 kb on + strand, within MPMX19_02831at 73.780 kb on + strand, within MPMX19_02831at 73.781 kb on - strand, within MPMX19_02831at 73.781 kb on - strand, within MPMX19_02831at 73.781 kb on - strand, within MPMX19_02831at 73.798 kb on + strand, within MPMX19_02831at 73.798 kb on + strand, within MPMX19_02831at 73.799 kb on - strand, within MPMX19_02831at 73.834 kb on + strand, within MPMX19_02831at 73.834 kb on + strand, within MPMX19_02831at 73.834 kb on + strand, within MPMX19_02831

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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71,085 + MPMX19_02829 0.30 -1.1
71,086 - MPMX19_02829 0.30 -0.1
71,095 + MPMX19_02829 0.31 -1.4
71,314 + MPMX19_02829 0.53 +0.4
71,314 + MPMX19_02829 0.53 +1.2
71,314 + MPMX19_02829 0.53 +0.3
71,314 + MPMX19_02829 0.53 -0.6
71,624 + MPMX19_02829 0.85 +0.4
71,624 + MPMX19_02829 0.85 -0.6
71,624 + MPMX19_02829 0.85 -0.4
71,624 + MPMX19_02829 0.85 -0.3
71,624 + MPMX19_02829 0.85 +0.6
71,624 + MPMX19_02829 0.85 -0.7
71,624 + MPMX19_02829 0.85 +0.1
71,625 - MPMX19_02829 0.85 -1.5
71,625 - MPMX19_02829 0.85 +1.3
71,625 - MPMX19_02829 0.85 -1.5
71,625 - MPMX19_02829 0.85 +1.0
71,625 - MPMX19_02829 0.85 +0.5
71,625 - MPMX19_02829 0.85 -1.5
71,625 - MPMX19_02829 0.85 -1.1
71,625 - MPMX19_02829 0.85 -0.3
71,739 + +1.9
71,740 - -1.1
72,346 - MPMX19_02830 0.42 -0.9
72,384 + MPMX19_02830 0.45 +0.5
72,384 + MPMX19_02830 0.45 +0.5
72,384 + MPMX19_02830 0.45 -2.2
72,385 - MPMX19_02830 0.45 -0.0
72,385 - MPMX19_02830 0.45 +0.4
72,474 + MPMX19_02830 0.52 -0.5
72,475 - MPMX19_02830 0.52 -0.7
72,912 + MPMX19_02830 0.88 -2.2
72,912 + MPMX19_02830 0.88 +0.1
72,912 + MPMX19_02830 0.88 -0.6
72,912 + MPMX19_02830 0.88 -0.2
72,912 + MPMX19_02830 0.88 +0.4
72,912 + MPMX19_02830 0.88 -1.4
72,912 + MPMX19_02830 0.88 +0.6
72,912 + MPMX19_02830 0.88 +0.2
72,912 + MPMX19_02830 0.88 -1.5
72,913 - MPMX19_02830 0.88 +0.4
72,913 - MPMX19_02830 0.88 +0.1
72,913 - MPMX19_02830 0.88 +0.3
72,913 - MPMX19_02830 0.88 -0.7
72,913 - MPMX19_02830 0.88 -1.9
72,913 - MPMX19_02830 0.88 +0.3
72,913 - MPMX19_02830 0.88 +1.6
72,913 - MPMX19_02830 0.88 +0.2
72,913 - MPMX19_02830 0.88 -0.8
73,141 + +0.6
73,141 + -1.9
73,141 + -1.6
73,141 + -1.3
73,142 - -1.4
73,142 - -0.3
73,142 - -0.4
73,142 - -2.5
73,142 - -0.1
73,249 + MPMX19_02831 0.15 -0.8
73,289 - MPMX19_02831 0.18 -1.2
73,289 - MPMX19_02831 0.18 -0.7
73,540 + MPMX19_02831 0.42 -0.3
73,540 + MPMX19_02831 0.42 -0.9
73,540 + MPMX19_02831 0.42 -0.9
73,541 - MPMX19_02831 0.42 -1.4
73,581 + MPMX19_02831 0.46 +0.7
73,600 + MPMX19_02831 0.48 -0.8
73,600 + MPMX19_02831 0.48 -0.7
73,600 + MPMX19_02831 0.48 +0.7
73,601 - MPMX19_02831 0.48 -1.7
73,601 - MPMX19_02831 0.48 -1.2
73,601 - MPMX19_02831 0.48 -0.4
73,726 + MPMX19_02831 0.59 +0.4
73,726 + MPMX19_02831 0.59 +0.8
73,726 + MPMX19_02831 0.59 -1.0
73,727 - MPMX19_02831 0.60 +0.5
73,727 - MPMX19_02831 0.60 +0.2
73,727 - MPMX19_02831 0.60 +1.6
73,727 - MPMX19_02831 0.60 -1.4
73,727 - MPMX19_02831 0.60 -0.3
73,727 - MPMX19_02831 0.60 -1.0
73,727 - MPMX19_02831 0.60 -1.5
73,780 + MPMX19_02831 0.65 -1.4
73,780 + MPMX19_02831 0.65 -0.8
73,781 - MPMX19_02831 0.65 -0.1
73,781 - MPMX19_02831 0.65 -0.3
73,781 - MPMX19_02831 0.65 -1.0
73,798 + MPMX19_02831 0.66 -0.9
73,798 + MPMX19_02831 0.66 -0.6
73,799 - MPMX19_02831 0.66 -0.8
73,834 + MPMX19_02831 0.70 -1.7
73,834 + MPMX19_02831 0.70 -0.7
73,834 + MPMX19_02831 0.70 -2.1

Or see this region's nucleotide sequence