Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02822 and MPMX19_02823 are separated by 323 nucleotides MPMX19_02823 and MPMX19_02824 are separated by 26 nucleotides MPMX19_02824 and MPMX19_02825 are separated by 82 nucleotides
MPMX19_02822: MPMX19_02822 - HTH-type transcriptional regulator ArgP, at 61,883 to 62,890
_02822
MPMX19_02823: MPMX19_02823 - N-formyl-4-amino-5-aminomethyl-2- methylpyrimidine deformylase, at 63,214 to 64,536
_02823
MPMX19_02824: MPMX19_02824 - Decarboxylase NovR, at 64,563 to 65,354
_02824
MPMX19_02825: MPMX19_02825 - Oligopeptide-binding protein AppA, at 65,437 to 67,104
_02825
Position (kb) 63
64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 62.337 kb on + strand, within MPMX19_02822 at 62.337 kb on + strand, within MPMX19_02822 at 62.337 kb on + strand, within MPMX19_02822 at 62.338 kb on - strand, within MPMX19_02822 at 62.338 kb on - strand, within MPMX19_02822 at 62.338 kb on - strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.490 kb on + strand, within MPMX19_02822 at 62.490 kb on + strand, within MPMX19_02822 at 62.491 kb on - strand, within MPMX19_02822 at 62.491 kb on - strand, within MPMX19_02822 at 62.491 kb on - strand, within MPMX19_02822 at 62.646 kb on + strand, within MPMX19_02822 at 62.646 kb on + strand, within MPMX19_02822 at 62.646 kb on + strand, within MPMX19_02822 at 62.647 kb on - strand, within MPMX19_02822 at 62.647 kb on - strand, within MPMX19_02822 at 62.647 kb on - strand, within MPMX19_02822 at 62.647 kb on - strand, within MPMX19_02822 at 62.950 kb on - strand at 62.950 kb on - strand at 62.950 kb on - strand at 63.016 kb on + strand at 63.044 kb on + strand at 63.091 kb on + strand at 63.091 kb on + strand at 63.091 kb on + strand at 63.092 kb on - strand at 63.102 kb on + strand at 63.103 kb on - strand at 63.210 kb on + strand at 63.210 kb on + strand at 63.211 kb on - strand at 63.225 kb on + strand at 63.225 kb on + strand at 63.225 kb on + strand at 63.226 kb on - strand at 63.490 kb on + strand, within MPMX19_02823 at 63.490 kb on + strand, within MPMX19_02823 at 63.491 kb on - strand, within MPMX19_02823 at 63.567 kb on + strand, within MPMX19_02823 at 63.568 kb on - strand, within MPMX19_02823 at 63.646 kb on + strand, within MPMX19_02823 at 63.646 kb on + strand, within MPMX19_02823 at 63.646 kb on + strand, within MPMX19_02823 at 63.646 kb on + strand, within MPMX19_02823 at 63.646 kb on + strand, within MPMX19_02823 at 63.646 kb on + strand, within MPMX19_02823 at 63.647 kb on - strand, within MPMX19_02823 at 63.647 kb on - strand, within MPMX19_02823 at 63.647 kb on - strand, within MPMX19_02823 at 63.647 kb on - strand, within MPMX19_02823 at 63.647 kb on - strand, within MPMX19_02823 at 63.647 kb on - strand, within MPMX19_02823 at 63.688 kb on + strand, within MPMX19_02823 at 63.688 kb on + strand, within MPMX19_02823 at 63.689 kb on - strand, within MPMX19_02823 at 63.745 kb on + strand, within MPMX19_02823 at 63.745 kb on + strand, within MPMX19_02823 at 63.745 kb on + strand, within MPMX19_02823 at 63.745 kb on + strand, within MPMX19_02823 at 63.745 kb on + strand, within MPMX19_02823 at 63.746 kb on - strand, within MPMX19_02823 at 63.746 kb on - strand, within MPMX19_02823 at 63.746 kb on - strand, within MPMX19_02823 at 63.746 kb on - strand, within MPMX19_02823 at 63.961 kb on + strand, within MPMX19_02823 at 63.961 kb on + strand, within MPMX19_02823 at 63.962 kb on - strand, within MPMX19_02823 at 63.962 kb on - strand, within MPMX19_02823 at 63.962 kb on - strand, within MPMX19_02823 at 64.390 kb on + strand, within MPMX19_02823 at 64.390 kb on + strand, within MPMX19_02823 at 64.391 kb on - strand, within MPMX19_02823 at 64.391 kb on - strand, within MPMX19_02823 at 64.391 kb on - strand, within MPMX19_02823 at 64.391 kb on - strand, within MPMX19_02823 at 64.391 kb on - strand, within MPMX19_02823 at 64.414 kb on + strand at 64.415 kb on - strand at 64.542 kb on + strand at 64.542 kb on + strand at 64.543 kb on - strand at 64.620 kb on + strand at 64.620 kb on + strand at 64.620 kb on + strand at 64.620 kb on + strand at 64.620 kb on + strand at 64.620 kb on + strand at 64.621 kb on - strand at 64.621 kb on - strand at 64.665 kb on + strand, within MPMX19_02824 at 64.665 kb on + strand, within MPMX19_02824 at 64.665 kb on + strand, within MPMX19_02824 at 64.665 kb on + strand, within MPMX19_02824 at 64.666 kb on - strand, within MPMX19_02824 at 64.666 kb on - strand, within MPMX19_02824 at 64.666 kb on - strand, within MPMX19_02824 at 64.666 kb on - strand, within MPMX19_02824 at 64.666 kb on - strand, within MPMX19_02824 at 64.666 kb on - strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.705 kb on - strand, within MPMX19_02824 at 64.705 kb on - strand, within MPMX19_02824 at 64.705 kb on - strand, within MPMX19_02824 at 64.705 kb on - strand, within MPMX19_02824 at 64.705 kb on - strand, within MPMX19_02824 at 64.705 kb on - strand, within MPMX19_02824 at 64.705 kb on - strand, within MPMX19_02824 at 64.705 kb on - strand, within MPMX19_02824 at 64.705 kb on - strand, within MPMX19_02824 at 64.705 kb on - strand, within MPMX19_02824 at 64.762 kb on - strand, within MPMX19_02824 at 65.001 kb on + strand, within MPMX19_02824 at 65.001 kb on + strand, within MPMX19_02824 at 65.001 kb on + strand, within MPMX19_02824 at 65.002 kb on - strand, within MPMX19_02824 at 65.002 kb on - strand, within MPMX19_02824 at 65.002 kb on - strand, within MPMX19_02824 at 65.002 kb on - strand, within MPMX19_02824 at 65.002 kb on - strand, within MPMX19_02824 at 65.002 kb on - strand, within MPMX19_02824 at 65.016 kb on + strand, within MPMX19_02824 at 65.016 kb on + strand, within MPMX19_02824 at 65.016 kb on + strand, within MPMX19_02824 at 65.017 kb on - strand, within MPMX19_02824 at 65.025 kb on + strand, within MPMX19_02824 at 65.025 kb on + strand, within MPMX19_02824 at 65.025 kb on + strand, within MPMX19_02824 at 65.025 kb on + strand, within MPMX19_02824 at 65.025 kb on + strand, within MPMX19_02824 at 65.025 kb on + strand, within MPMX19_02824 at 65.025 kb on + strand, within MPMX19_02824 at 65.025 kb on + strand, within MPMX19_02824 at 65.025 kb on + strand, within MPMX19_02824 at 65.025 kb on + strand, within MPMX19_02824 at 65.025 kb on + strand, within MPMX19_02824 at 65.026 kb on - strand, within MPMX19_02824 at 65.026 kb on - strand, within MPMX19_02824 at 65.026 kb on - strand, within MPMX19_02824 at 65.026 kb on - strand, within MPMX19_02824 at 65.026 kb on - strand, within MPMX19_02824 at 65.026 kb on - strand, within MPMX19_02824 at 65.026 kb on - strand, within MPMX19_02824 at 65.160 kb on + strand, within MPMX19_02824 at 65.160 kb on + strand, within MPMX19_02824 at 65.160 kb on + strand, within MPMX19_02824 at 65.160 kb on + strand, within MPMX19_02824 at 65.160 kb on + strand, within MPMX19_02824 at 65.160 kb on + strand, within MPMX19_02824 at 65.160 kb on + strand, within MPMX19_02824 at 65.160 kb on + strand, within MPMX19_02824 at 65.160 kb on + strand, within MPMX19_02824 at 65.160 kb on + strand, within MPMX19_02824 at 65.160 kb on + strand, within MPMX19_02824 at 65.161 kb on - strand, within MPMX19_02824 at 65.161 kb on - strand, within MPMX19_02824 at 65.161 kb on - strand, within MPMX19_02824 at 65.161 kb on - strand, within MPMX19_02824 at 65.161 kb on - strand, within MPMX19_02824 at 65.161 kb on - strand, within MPMX19_02824 at 65.161 kb on - strand, within MPMX19_02824 at 65.161 kb on - strand, within MPMX19_02824 at 65.161 kb on - strand, within MPMX19_02824 at 65.161 kb on - strand, within MPMX19_02824 at 65.163 kb on + strand, within MPMX19_02824 at 65.163 kb on + strand, within MPMX19_02824 at 65.163 kb on + strand, within MPMX19_02824 at 65.163 kb on + strand, within MPMX19_02824 at 65.163 kb on + strand, within MPMX19_02824 at 65.163 kb on + strand, within MPMX19_02824 at 65.163 kb on + strand, within MPMX19_02824 at 65.163 kb on + strand, within MPMX19_02824 at 65.164 kb on - strand, within MPMX19_02824 at 65.164 kb on - strand, within MPMX19_02824 at 65.164 kb on - strand, within MPMX19_02824 at 65.164 kb on - strand, within MPMX19_02824 at 65.164 kb on - strand, within MPMX19_02824 at 65.164 kb on - strand, within MPMX19_02824 at 65.223 kb on + strand, within MPMX19_02824 at 65.224 kb on - strand, within MPMX19_02824 at 65.224 kb on - strand, within MPMX19_02824 at 65.224 kb on - strand, within MPMX19_02824 at 65.224 kb on - strand, within MPMX19_02824 at 65.262 kb on + strand, within MPMX19_02824 at 65.262 kb on + strand, within MPMX19_02824 at 65.262 kb on + strand, within MPMX19_02824 at 65.262 kb on + strand, within MPMX19_02824 at 65.262 kb on + strand, within MPMX19_02824 at 65.262 kb on + strand, within MPMX19_02824 at 65.262 kb on + strand, within MPMX19_02824 at 65.263 kb on - strand, within MPMX19_02824 at 65.263 kb on - strand, within MPMX19_02824 at 65.275 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 62,337 + MPMX19_02822 0.45 +1.0 62,337 + MPMX19_02822 0.45 +0.5 62,337 + MPMX19_02822 0.45 -0.5 62,338 - MPMX19_02822 0.45 -0.7 62,338 - MPMX19_02822 0.45 +0.4 62,338 - MPMX19_02822 0.45 -0.7 62,346 + MPMX19_02822 0.46 -1.0 62,346 + MPMX19_02822 0.46 -1.1 62,346 + MPMX19_02822 0.46 -0.4 62,346 + MPMX19_02822 0.46 -0.8 62,346 + MPMX19_02822 0.46 -0.5 62,346 + MPMX19_02822 0.46 +0.6 62,346 + MPMX19_02822 0.46 +0.6 62,346 + MPMX19_02822 0.46 -0.9 62,346 + MPMX19_02822 0.46 +0.3 62,346 + MPMX19_02822 0.46 +0.5 62,346 + MPMX19_02822 0.46 -0.4 62,346 + MPMX19_02822 0.46 -2.1 62,347 - MPMX19_02822 0.46 +0.1 62,347 - MPMX19_02822 0.46 -1.7 62,347 - MPMX19_02822 0.46 +0.1 62,347 - MPMX19_02822 0.46 +0.6 62,347 - MPMX19_02822 0.46 -1.5 62,347 - MPMX19_02822 0.46 -0.2 62,347 - MPMX19_02822 0.46 +0.3 62,490 + MPMX19_02822 0.60 -0.7 62,490 + MPMX19_02822 0.60 -2.1 62,491 - MPMX19_02822 0.60 -1.2 62,491 - MPMX19_02822 0.60 -0.4 62,491 - MPMX19_02822 0.60 +1.1 62,646 + MPMX19_02822 0.76 -0.0 62,646 + MPMX19_02822 0.76 -0.5 62,646 + MPMX19_02822 0.76 -0.2 62,647 - MPMX19_02822 0.76 -1.8 62,647 - MPMX19_02822 0.76 +0.9 62,647 - MPMX19_02822 0.76 +0.5 62,647 - MPMX19_02822 0.76 -0.4 62,950 - -0.7 62,950 - +0.1 62,950 - -0.2 63,016 + +0.5 63,044 + -0.3 63,091 + +0.4 63,091 + +0.6 63,091 + -0.7 63,092 - +0.8 63,102 + -0.7 63,103 - -0.6 63,210 + +0.4 63,210 + -0.7 63,211 - -0.0 63,225 + -2.9 63,225 + -0.8 63,225 + +0.1 63,226 - +0.4 63,490 + MPMX19_02823 0.21 -0.1 63,490 + MPMX19_02823 0.21 -0.8 63,491 - MPMX19_02823 0.21 +1.0 63,567 + MPMX19_02823 0.27 +1.1 63,568 - MPMX19_02823 0.27 -0.5 63,646 + MPMX19_02823 0.33 -1.3 63,646 + MPMX19_02823 0.33 -0.4 63,646 + MPMX19_02823 0.33 -0.7 63,646 + MPMX19_02823 0.33 -1.9 63,646 + MPMX19_02823 0.33 +0.2 63,646 + MPMX19_02823 0.33 -1.5 63,647 - MPMX19_02823 0.33 +1.0 63,647 - MPMX19_02823 0.33 -0.3 63,647 - MPMX19_02823 0.33 -0.9 63,647 - MPMX19_02823 0.33 -0.3 63,647 - MPMX19_02823 0.33 +0.1 63,647 - MPMX19_02823 0.33 -0.2 63,688 + MPMX19_02823 0.36 +0.7 63,688 + MPMX19_02823 0.36 -0.9 63,689 - MPMX19_02823 0.36 -2.4 63,745 + MPMX19_02823 0.40 -0.4 63,745 + MPMX19_02823 0.40 +0.8 63,745 + MPMX19_02823 0.40 -1.0 63,745 + MPMX19_02823 0.40 -0.1 63,745 + MPMX19_02823 0.40 -0.4 63,746 - MPMX19_02823 0.40 +1.2 63,746 - MPMX19_02823 0.40 -1.8 63,746 - MPMX19_02823 0.40 -0.3 63,746 - MPMX19_02823 0.40 -3.2 63,961 + MPMX19_02823 0.56 -1.2 63,961 + MPMX19_02823 0.56 -0.4 63,962 - MPMX19_02823 0.57 -0.2 63,962 - MPMX19_02823 0.57 -0.2 63,962 - MPMX19_02823 0.57 -0.4 64,390 + MPMX19_02823 0.89 -1.6 64,390 + MPMX19_02823 0.89 -0.9 64,391 - MPMX19_02823 0.89 -1.7 64,391 - MPMX19_02823 0.89 -2.1 64,391 - MPMX19_02823 0.89 +0.1 64,391 - MPMX19_02823 0.89 +0.4 64,391 - MPMX19_02823 0.89 -0.9 64,414 + +1.2 64,415 - -0.6 64,542 + +0.2 64,542 + +0.3 64,543 - -0.4 64,620 + +0.1 64,620 + +0.2 64,620 + -0.3 64,620 + -1.7 64,620 + +1.1 64,620 + -1.2 64,621 - -0.5 64,621 - -0.7 64,665 + MPMX19_02824 0.13 +0.6 64,665 + MPMX19_02824 0.13 +0.3 64,665 + MPMX19_02824 0.13 -2.1 64,665 + MPMX19_02824 0.13 -2.2 64,666 - MPMX19_02824 0.13 -1.0 64,666 - MPMX19_02824 0.13 +0.1 64,666 - MPMX19_02824 0.13 -1.6 64,666 - MPMX19_02824 0.13 -1.5 64,666 - MPMX19_02824 0.13 -1.9 64,666 - MPMX19_02824 0.13 -0.2 64,704 + MPMX19_02824 0.18 -1.0 64,704 + MPMX19_02824 0.18 +0.1 64,704 + MPMX19_02824 0.18 +0.9 64,704 + MPMX19_02824 0.18 +0.1 64,704 + MPMX19_02824 0.18 +0.8 64,704 + MPMX19_02824 0.18 +0.1 64,704 + MPMX19_02824 0.18 -1.3 64,704 + MPMX19_02824 0.18 +0.5 64,704 + MPMX19_02824 0.18 +1.1 64,704 + MPMX19_02824 0.18 -2.2 64,704 + MPMX19_02824 0.18 +0.3 64,704 + MPMX19_02824 0.18 +0.5 64,704 + MPMX19_02824 0.18 +0.5 64,705 - MPMX19_02824 0.18 -0.5 64,705 - MPMX19_02824 0.18 -0.7 64,705 - MPMX19_02824 0.18 +0.6 64,705 - MPMX19_02824 0.18 -0.6 64,705 - MPMX19_02824 0.18 -1.5 64,705 - MPMX19_02824 0.18 -0.4 64,705 - MPMX19_02824 0.18 -0.7 64,705 - MPMX19_02824 0.18 +0.5 64,705 - MPMX19_02824 0.18 -0.5 64,705 - MPMX19_02824 0.18 +1.1 64,762 - MPMX19_02824 0.25 -1.5 65,001 + MPMX19_02824 0.55 -0.7 65,001 + MPMX19_02824 0.55 -0.1 65,001 + MPMX19_02824 0.55 +0.8 65,002 - MPMX19_02824 0.55 -0.7 65,002 - MPMX19_02824 0.55 -0.6 65,002 - MPMX19_02824 0.55 -0.6 65,002 - MPMX19_02824 0.55 -1.1 65,002 - MPMX19_02824 0.55 -0.1 65,002 - MPMX19_02824 0.55 -1.2 65,016 + MPMX19_02824 0.57 -0.5 65,016 + MPMX19_02824 0.57 -0.8 65,016 + MPMX19_02824 0.57 +0.3 65,017 - MPMX19_02824 0.57 +0.5 65,025 + MPMX19_02824 0.58 -1.5 65,025 + MPMX19_02824 0.58 -1.1 65,025 + MPMX19_02824 0.58 +0.1 65,025 + MPMX19_02824 0.58 -0.5 65,025 + MPMX19_02824 0.58 +1.2 65,025 + MPMX19_02824 0.58 -0.7 65,025 + MPMX19_02824 0.58 +1.3 65,025 + MPMX19_02824 0.58 +0.2 65,025 + MPMX19_02824 0.58 -0.7 65,025 + MPMX19_02824 0.58 -0.8 65,025 + MPMX19_02824 0.58 -0.3 65,026 - MPMX19_02824 0.58 +0.2 65,026 - MPMX19_02824 0.58 -2.1 65,026 - MPMX19_02824 0.58 -0.5 65,026 - MPMX19_02824 0.58 +0.2 65,026 - MPMX19_02824 0.58 -0.5 65,026 - MPMX19_02824 0.58 +0.8 65,026 - MPMX19_02824 0.58 -0.9 65,160 + MPMX19_02824 0.75 +0.6 65,160 + MPMX19_02824 0.75 +1.4 65,160 + MPMX19_02824 0.75 +0.3 65,160 + MPMX19_02824 0.75 +0.3 65,160 + MPMX19_02824 0.75 +0.8 65,160 + MPMX19_02824 0.75 -1.4 65,160 + MPMX19_02824 0.75 -2.2 65,160 + MPMX19_02824 0.75 +0.1 65,160 + MPMX19_02824 0.75 -0.5 65,160 + MPMX19_02824 0.75 -0.5 65,160 + MPMX19_02824 0.75 -2.6 65,161 - MPMX19_02824 0.76 +0.8 65,161 - MPMX19_02824 0.76 -0.8 65,161 - MPMX19_02824 0.76 -0.8 65,161 - MPMX19_02824 0.76 -0.1 65,161 - MPMX19_02824 0.76 -1.7 65,161 - MPMX19_02824 0.76 -1.2 65,161 - MPMX19_02824 0.76 -1.2 65,161 - MPMX19_02824 0.76 -1.2 65,161 - MPMX19_02824 0.76 -2.1 65,161 - MPMX19_02824 0.76 +0.2 65,163 + MPMX19_02824 0.76 -0.2 65,163 + MPMX19_02824 0.76 +0.6 65,163 + MPMX19_02824 0.76 -0.1 65,163 + MPMX19_02824 0.76 +0.8 65,163 + MPMX19_02824 0.76 +1.0 65,163 + MPMX19_02824 0.76 +0.4 65,163 + MPMX19_02824 0.76 -0.4 65,163 + MPMX19_02824 0.76 +0.3 65,164 - MPMX19_02824 0.76 -0.2 65,164 - MPMX19_02824 0.76 +0.9 65,164 - MPMX19_02824 0.76 +0.9 65,164 - MPMX19_02824 0.76 +0.1 65,164 - MPMX19_02824 0.76 -0.7 65,164 - MPMX19_02824 0.76 -0.8 65,223 + MPMX19_02824 0.83 -0.7 65,224 - MPMX19_02824 0.83 +0.1 65,224 - MPMX19_02824 0.83 +0.6 65,224 - MPMX19_02824 0.83 -0.5 65,224 - MPMX19_02824 0.83 -0.2 65,262 + MPMX19_02824 0.88 -2.3 65,262 + MPMX19_02824 0.88 +0.1 65,262 + MPMX19_02824 0.88 +0.5 65,262 + MPMX19_02824 0.88 +0.5 65,262 + MPMX19_02824 0.88 -0.8 65,262 + MPMX19_02824 0.88 -0.5 65,262 + MPMX19_02824 0.88 +0.9 65,263 - MPMX19_02824 0.88 -0.6 65,263 - MPMX19_02824 0.88 +1.1 65,275 - -0.4
Or see this region's nucleotide sequence