Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02807

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02806 and MPMX19_02807 are separated by 64 nucleotidesMPMX19_02807 and MPMX19_02808 are separated by 98 nucleotides MPMX19_02806: MPMX19_02806 - HTH-type transcriptional regulator DmlR, at 41,088 to 42,104 _02806 MPMX19_02807: MPMX19_02807 - L-threonine dehydratase biosynthetic IlvA, at 42,169 to 43,698 _02807 MPMX19_02808: MPMX19_02808 - HTH-type transcriptional repressor NanR, at 43,797 to 44,573 _02808 Position (kb) 42 43 44Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 41.233 kb on - strand, within MPMX19_02806at 41.389 kb on - strand, within MPMX19_02806at 41.532 kb on + strand, within MPMX19_02806at 41.532 kb on + strand, within MPMX19_02806at 41.533 kb on - strand, within MPMX19_02806at 41.533 kb on - strand, within MPMX19_02806at 41.778 kb on + strand, within MPMX19_02806at 42.006 kb on + strandat 42.006 kb on + strandat 42.006 kb on + strandat 42.006 kb on + strandat 42.006 kb on + strandat 42.006 kb on + strandat 42.007 kb on - strandat 42.007 kb on - strandat 42.007 kb on - strandat 42.007 kb on - strandat 42.102 kb on + strandat 42.102 kb on + strandat 42.102 kb on + strandat 42.103 kb on - strandat 42.103 kb on - strandat 42.138 kb on + strandat 42.138 kb on + strandat 42.139 kb on - strandat 42.139 kb on - strandat 42.139 kb on - strandat 42.139 kb on - strandat 42.139 kb on - strandat 42.139 kb on - strandat 42.139 kb on - strandat 42.139 kb on - strandat 42.139 kb on - strandat 42.139 kb on - strandat 42.184 kb on + strandat 42.184 kb on + strandat 42.184 kb on + strandat 42.184 kb on + strandat 42.184 kb on + strandat 42.184 kb on + strandat 42.184 kb on + strandat 42.184 kb on + strandat 42.185 kb on - strandat 42.185 kb on - strandat 42.185 kb on - strandat 42.185 kb on - strandat 42.214 kb on + strandat 42.214 kb on + strandat 42.215 kb on - strandat 42.215 kb on - strandat 42.215 kb on - strandat 42.215 kb on - strandat 42.215 kb on - strandat 42.215 kb on - strandat 42.337 kb on + strand, within MPMX19_02807at 42.337 kb on + strand, within MPMX19_02807at 42.337 kb on + strand, within MPMX19_02807at 42.553 kb on + strand, within MPMX19_02807at 42.553 kb on + strand, within MPMX19_02807at 42.553 kb on + strand, within MPMX19_02807at 42.553 kb on + strand, within MPMX19_02807at 42.553 kb on + strand, within MPMX19_02807at 42.553 kb on + strand, within MPMX19_02807at 42.553 kb on + strand, within MPMX19_02807at 42.553 kb on + strand, within MPMX19_02807at 42.554 kb on - strand, within MPMX19_02807at 42.607 kb on + strand, within MPMX19_02807at 42.607 kb on + strand, within MPMX19_02807at 42.607 kb on + strand, within MPMX19_02807at 42.607 kb on + strand, within MPMX19_02807at 42.607 kb on + strand, within MPMX19_02807at 42.607 kb on + strand, within MPMX19_02807at 42.607 kb on + strand, within MPMX19_02807at 42.607 kb on + strand, within MPMX19_02807at 42.608 kb on - strand, within MPMX19_02807at 42.608 kb on - strand, within MPMX19_02807at 42.608 kb on - strand, within MPMX19_02807at 42.736 kb on + strand, within MPMX19_02807at 42.736 kb on + strand, within MPMX19_02807at 42.736 kb on + strand, within MPMX19_02807at 42.737 kb on - strand, within MPMX19_02807at 43.036 kb on + strand, within MPMX19_02807at 43.036 kb on + strand, within MPMX19_02807at 43.037 kb on - strand, within MPMX19_02807at 43.037 kb on - strand, within MPMX19_02807at 43.196 kb on - strand, within MPMX19_02807at 43.246 kb on + strand, within MPMX19_02807at 43.246 kb on + strand, within MPMX19_02807at 43.246 kb on + strand, within MPMX19_02807at 43.246 kb on + strand, within MPMX19_02807at 43.246 kb on + strand, within MPMX19_02807at 43.246 kb on + strand, within MPMX19_02807at 43.246 kb on + strand, within MPMX19_02807at 43.247 kb on - strand, within MPMX19_02807at 43.247 kb on - strand, within MPMX19_02807at 43.247 kb on - strand, within MPMX19_02807at 43.252 kb on + strand, within MPMX19_02807at 43.253 kb on - strand, within MPMX19_02807at 43.253 kb on - strand, within MPMX19_02807at 43.402 kb on + strand, within MPMX19_02807at 43.402 kb on + strand, within MPMX19_02807at 43.402 kb on + strand, within MPMX19_02807at 43.403 kb on - strand, within MPMX19_02807at 43.403 kb on - strand, within MPMX19_02807at 43.403 kb on - strand, within MPMX19_02807at 43.403 kb on - strand, within MPMX19_02807at 43.403 kb on - strand, within MPMX19_02807at 43.403 kb on - strand, within MPMX19_02807at 43.403 kb on - strand, within MPMX19_02807at 43.555 kb on + strandat 43.737 kb on + strandat 43.737 kb on + strandat 43.737 kb on + strandat 44.439 kb on + strand, within MPMX19_02808at 44.571 kb on + strandat 44.650 kb on + strandat 44.670 kb on + strandat 44.678 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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41,233 - MPMX19_02806 0.14 -0.1
41,389 - MPMX19_02806 0.30 +2.2
41,532 + MPMX19_02806 0.44 -1.3
41,532 + MPMX19_02806 0.44 -0.5
41,533 - MPMX19_02806 0.44 +0.2
41,533 - MPMX19_02806 0.44 +0.6
41,778 + MPMX19_02806 0.68 -0.9
42,006 + -0.2
42,006 + +0.3
42,006 + +1.6
42,006 + -0.1
42,006 + +0.2
42,006 + -0.3
42,007 - -1.7
42,007 - -1.1
42,007 - -0.4
42,007 - +0.1
42,102 + -1.1
42,102 + -0.5
42,102 + -1.8
42,103 - -0.7
42,103 - -0.7
42,138 + -0.0
42,138 + +0.1
42,139 - -1.5
42,139 - +0.2
42,139 - +0.9
42,139 - +0.4
42,139 - -0.5
42,139 - -0.6
42,139 - -1.1
42,139 - -2.8
42,139 - -0.5
42,139 - -1.6
42,184 + -0.5
42,184 + -0.8
42,184 + -1.1
42,184 + -0.5
42,184 + -2.4
42,184 + -0.8
42,184 + -0.2
42,184 + -1.5
42,185 - -0.2
42,185 - -0.5
42,185 - -0.1
42,185 - -1.9
42,214 + -0.9
42,214 + +1.1
42,215 - +0.3
42,215 - -0.3
42,215 - -1.4
42,215 - -0.6
42,215 - -0.8
42,215 - -0.5
42,337 + MPMX19_02807 0.11 -0.0
42,337 + MPMX19_02807 0.11 -1.8
42,337 + MPMX19_02807 0.11 +0.1
42,553 + MPMX19_02807 0.25 -0.7
42,553 + MPMX19_02807 0.25 -0.4
42,553 + MPMX19_02807 0.25 -1.5
42,553 + MPMX19_02807 0.25 -0.3
42,553 + MPMX19_02807 0.25 -1.7
42,553 + MPMX19_02807 0.25 -0.7
42,553 + MPMX19_02807 0.25 -1.1
42,553 + MPMX19_02807 0.25 -0.9
42,554 - MPMX19_02807 0.25 -1.0
42,607 + MPMX19_02807 0.29 -0.4
42,607 + MPMX19_02807 0.29 +1.4
42,607 + MPMX19_02807 0.29 +0.1
42,607 + MPMX19_02807 0.29 -0.2
42,607 + MPMX19_02807 0.29 -0.2
42,607 + MPMX19_02807 0.29 -1.5
42,607 + MPMX19_02807 0.29 -1.5
42,607 + MPMX19_02807 0.29 -1.8
42,608 - MPMX19_02807 0.29 -0.4
42,608 - MPMX19_02807 0.29 -0.5
42,608 - MPMX19_02807 0.29 -1.1
42,736 + MPMX19_02807 0.37 -0.8
42,736 + MPMX19_02807 0.37 +1.0
42,736 + MPMX19_02807 0.37 -1.0
42,737 - MPMX19_02807 0.37 +0.9
43,036 + MPMX19_02807 0.57 -0.1
43,036 + MPMX19_02807 0.57 -1.3
43,037 - MPMX19_02807 0.57 +1.8
43,037 - MPMX19_02807 0.57 -1.7
43,196 - MPMX19_02807 0.67 +0.4
43,246 + MPMX19_02807 0.70 -1.2
43,246 + MPMX19_02807 0.70 -0.9
43,246 + MPMX19_02807 0.70 +0.1
43,246 + MPMX19_02807 0.70 -1.1
43,246 + MPMX19_02807 0.70 -1.2
43,246 + MPMX19_02807 0.70 -1.5
43,246 + MPMX19_02807 0.70 -1.2
43,247 - MPMX19_02807 0.70 -1.9
43,247 - MPMX19_02807 0.70 -0.2
43,247 - MPMX19_02807 0.70 +0.9
43,252 + MPMX19_02807 0.71 -0.3
43,253 - MPMX19_02807 0.71 -0.9
43,253 - MPMX19_02807 0.71 -0.8
43,402 + MPMX19_02807 0.81 +0.2
43,402 + MPMX19_02807 0.81 -0.9
43,402 + MPMX19_02807 0.81 -1.5
43,403 - MPMX19_02807 0.81 +0.1
43,403 - MPMX19_02807 0.81 -1.4
43,403 - MPMX19_02807 0.81 +0.2
43,403 - MPMX19_02807 0.81 -0.3
43,403 - MPMX19_02807 0.81 -1.1
43,403 - MPMX19_02807 0.81 -0.1
43,403 - MPMX19_02807 0.81 -0.7
43,555 + +1.6
43,737 + +0.6
43,737 + -0.8
43,737 + -1.6
44,439 + MPMX19_02808 0.83 -1.2
44,571 + -0.1
44,650 + +0.5
44,670 + +0.2
44,678 + -1.2

Or see this region's nucleotide sequence