Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02806 and MPMX19_02807 are separated by 64 nucleotides MPMX19_02807 and MPMX19_02808 are separated by 98 nucleotides
MPMX19_02806: MPMX19_02806 - HTH-type transcriptional regulator DmlR, at 41,088 to 42,104
_02806
MPMX19_02807: MPMX19_02807 - L-threonine dehydratase biosynthetic IlvA, at 42,169 to 43,698
_02807
MPMX19_02808: MPMX19_02808 - HTH-type transcriptional repressor NanR, at 43,797 to 44,573
_02808
Position (kb)
42
43
44 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 41.233 kb on - strand, within MPMX19_02806 at 41.389 kb on - strand, within MPMX19_02806 at 41.532 kb on + strand, within MPMX19_02806 at 41.532 kb on + strand, within MPMX19_02806 at 41.533 kb on - strand, within MPMX19_02806 at 41.533 kb on - strand, within MPMX19_02806 at 41.778 kb on + strand, within MPMX19_02806 at 42.006 kb on + strand at 42.006 kb on + strand at 42.006 kb on + strand at 42.006 kb on + strand at 42.006 kb on + strand at 42.006 kb on + strand at 42.007 kb on - strand at 42.007 kb on - strand at 42.007 kb on - strand at 42.007 kb on - strand at 42.102 kb on + strand at 42.102 kb on + strand at 42.102 kb on + strand at 42.103 kb on - strand at 42.103 kb on - strand at 42.138 kb on + strand at 42.138 kb on + strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.185 kb on - strand at 42.185 kb on - strand at 42.185 kb on - strand at 42.185 kb on - strand at 42.214 kb on + strand at 42.214 kb on + strand at 42.215 kb on - strand at 42.215 kb on - strand at 42.215 kb on - strand at 42.215 kb on - strand at 42.215 kb on - strand at 42.215 kb on - strand at 42.337 kb on + strand, within MPMX19_02807 at 42.337 kb on + strand, within MPMX19_02807 at 42.337 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.554 kb on - strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.608 kb on - strand, within MPMX19_02807 at 42.608 kb on - strand, within MPMX19_02807 at 42.608 kb on - strand, within MPMX19_02807 at 42.736 kb on + strand, within MPMX19_02807 at 42.736 kb on + strand, within MPMX19_02807 at 42.736 kb on + strand, within MPMX19_02807 at 42.737 kb on - strand, within MPMX19_02807 at 43.036 kb on + strand, within MPMX19_02807 at 43.036 kb on + strand, within MPMX19_02807 at 43.037 kb on - strand, within MPMX19_02807 at 43.037 kb on - strand, within MPMX19_02807 at 43.196 kb on - strand, within MPMX19_02807 at 43.246 kb on + strand, within MPMX19_02807 at 43.246 kb on + strand, within MPMX19_02807 at 43.246 kb on + strand, within MPMX19_02807 at 43.246 kb on + strand, within MPMX19_02807 at 43.246 kb on + strand, within MPMX19_02807 at 43.246 kb on + strand, within MPMX19_02807 at 43.246 kb on + strand, within MPMX19_02807 at 43.247 kb on - strand, within MPMX19_02807 at 43.247 kb on - strand, within MPMX19_02807 at 43.247 kb on - strand, within MPMX19_02807 at 43.252 kb on + strand, within MPMX19_02807 at 43.253 kb on - strand, within MPMX19_02807 at 43.253 kb on - strand, within MPMX19_02807 at 43.402 kb on + strand, within MPMX19_02807 at 43.402 kb on + strand, within MPMX19_02807 at 43.402 kb on + strand, within MPMX19_02807 at 43.403 kb on - strand, within MPMX19_02807 at 43.403 kb on - strand, within MPMX19_02807 at 43.403 kb on - strand, within MPMX19_02807 at 43.403 kb on - strand, within MPMX19_02807 at 43.403 kb on - strand, within MPMX19_02807 at 43.403 kb on - strand, within MPMX19_02807 at 43.403 kb on - strand, within MPMX19_02807 at 43.555 kb on + strand at 43.737 kb on + strand at 43.737 kb on + strand at 43.737 kb on + strand at 44.439 kb on + strand, within MPMX19_02808 at 44.571 kb on + strand at 44.650 kb on + strand at 44.670 kb on + strand at 44.678 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 41,233 - MPMX19_02806 0.14 -0.1 41,389 - MPMX19_02806 0.30 +2.2 41,532 + MPMX19_02806 0.44 -1.3 41,532 + MPMX19_02806 0.44 -0.5 41,533 - MPMX19_02806 0.44 +0.2 41,533 - MPMX19_02806 0.44 +0.6 41,778 + MPMX19_02806 0.68 -0.9 42,006 + -0.2 42,006 + +0.3 42,006 + +1.6 42,006 + -0.1 42,006 + +0.2 42,006 + -0.3 42,007 - -1.7 42,007 - -1.1 42,007 - -0.4 42,007 - +0.1 42,102 + -1.1 42,102 + -0.5 42,102 + -1.8 42,103 - -0.7 42,103 - -0.7 42,138 + -0.0 42,138 + +0.1 42,139 - -1.5 42,139 - +0.2 42,139 - +0.9 42,139 - +0.4 42,139 - -0.5 42,139 - -0.6 42,139 - -1.1 42,139 - -2.8 42,139 - -0.5 42,139 - -1.6 42,184 + -0.5 42,184 + -0.8 42,184 + -1.1 42,184 + -0.5 42,184 + -2.4 42,184 + -0.8 42,184 + -0.2 42,184 + -1.5 42,185 - -0.2 42,185 - -0.5 42,185 - -0.1 42,185 - -1.9 42,214 + -0.9 42,214 + +1.1 42,215 - +0.3 42,215 - -0.3 42,215 - -1.4 42,215 - -0.6 42,215 - -0.8 42,215 - -0.5 42,337 + MPMX19_02807 0.11 -0.0 42,337 + MPMX19_02807 0.11 -1.8 42,337 + MPMX19_02807 0.11 +0.1 42,553 + MPMX19_02807 0.25 -0.7 42,553 + MPMX19_02807 0.25 -0.4 42,553 + MPMX19_02807 0.25 -1.5 42,553 + MPMX19_02807 0.25 -0.3 42,553 + MPMX19_02807 0.25 -1.7 42,553 + MPMX19_02807 0.25 -0.7 42,553 + MPMX19_02807 0.25 -1.1 42,553 + MPMX19_02807 0.25 -0.9 42,554 - MPMX19_02807 0.25 -1.0 42,607 + MPMX19_02807 0.29 -0.4 42,607 + MPMX19_02807 0.29 +1.4 42,607 + MPMX19_02807 0.29 +0.1 42,607 + MPMX19_02807 0.29 -0.2 42,607 + MPMX19_02807 0.29 -0.2 42,607 + MPMX19_02807 0.29 -1.5 42,607 + MPMX19_02807 0.29 -1.5 42,607 + MPMX19_02807 0.29 -1.8 42,608 - MPMX19_02807 0.29 -0.4 42,608 - MPMX19_02807 0.29 -0.5 42,608 - MPMX19_02807 0.29 -1.1 42,736 + MPMX19_02807 0.37 -0.8 42,736 + MPMX19_02807 0.37 +1.0 42,736 + MPMX19_02807 0.37 -1.0 42,737 - MPMX19_02807 0.37 +0.9 43,036 + MPMX19_02807 0.57 -0.1 43,036 + MPMX19_02807 0.57 -1.3 43,037 - MPMX19_02807 0.57 +1.8 43,037 - MPMX19_02807 0.57 -1.7 43,196 - MPMX19_02807 0.67 +0.4 43,246 + MPMX19_02807 0.70 -1.2 43,246 + MPMX19_02807 0.70 -0.9 43,246 + MPMX19_02807 0.70 +0.1 43,246 + MPMX19_02807 0.70 -1.1 43,246 + MPMX19_02807 0.70 -1.2 43,246 + MPMX19_02807 0.70 -1.5 43,246 + MPMX19_02807 0.70 -1.2 43,247 - MPMX19_02807 0.70 -1.9 43,247 - MPMX19_02807 0.70 -0.2 43,247 - MPMX19_02807 0.70 +0.9 43,252 + MPMX19_02807 0.71 -0.3 43,253 - MPMX19_02807 0.71 -0.9 43,253 - MPMX19_02807 0.71 -0.8 43,402 + MPMX19_02807 0.81 +0.2 43,402 + MPMX19_02807 0.81 -0.9 43,402 + MPMX19_02807 0.81 -1.5 43,403 - MPMX19_02807 0.81 +0.1 43,403 - MPMX19_02807 0.81 -1.4 43,403 - MPMX19_02807 0.81 +0.2 43,403 - MPMX19_02807 0.81 -0.3 43,403 - MPMX19_02807 0.81 -1.1 43,403 - MPMX19_02807 0.81 -0.1 43,403 - MPMX19_02807 0.81 -0.7 43,555 + +1.6 43,737 + +0.6 43,737 + -0.8 43,737 + -1.6 44,439 + MPMX19_02808 0.83 -1.2 44,571 + -0.1 44,650 + +0.5 44,670 + +0.2 44,678 + -1.2
Or see this region's nucleotide sequence