Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02805

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02804 and MPMX19_02805 are separated by 191 nucleotidesMPMX19_02805 and MPMX19_02806 are separated by 30 nucleotides MPMX19_02804: MPMX19_02804 - 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial, at 38,806 to 39,612 _02804 MPMX19_02805: MPMX19_02805 - putative transporter, at 39,804 to 41,057 _02805 MPMX19_02806: MPMX19_02806 - HTH-type transcriptional regulator DmlR, at 41,088 to 42,104 _02806 Position (kb) 39 40 41 42Strain fitness (log2 ratio) -2 -1 0 1 2at 38.848 kb on + strandat 39.080 kb on + strand, within MPMX19_02804at 39.081 kb on - strand, within MPMX19_02804at 39.081 kb on - strand, within MPMX19_02804at 39.343 kb on + strand, within MPMX19_02804at 39.343 kb on + strand, within MPMX19_02804at 39.344 kb on - strand, within MPMX19_02804at 39.344 kb on - strand, within MPMX19_02804at 39.530 kb on + strand, within MPMX19_02804at 39.531 kb on - strand, within MPMX19_02804at 39.531 kb on - strand, within MPMX19_02804at 39.557 kb on + strandat 39.557 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.649 kb on + strandat 39.649 kb on + strandat 39.650 kb on - strandat 39.650 kb on - strandat 39.997 kb on + strand, within MPMX19_02805at 39.997 kb on + strand, within MPMX19_02805at 39.998 kb on - strand, within MPMX19_02805at 39.998 kb on - strand, within MPMX19_02805at 40.406 kb on - strand, within MPMX19_02805at 40.406 kb on - strand, within MPMX19_02805at 40.816 kb on + strand, within MPMX19_02805at 40.816 kb on + strand, within MPMX19_02805at 40.817 kb on - strand, within MPMX19_02805at 40.906 kb on + strand, within MPMX19_02805at 40.906 kb on + strand, within MPMX19_02805at 40.906 kb on + strand, within MPMX19_02805at 40.906 kb on + strand, within MPMX19_02805at 40.906 kb on + strand, within MPMX19_02805at 40.906 kb on + strand, within MPMX19_02805at 40.906 kb on + strand, within MPMX19_02805at 40.907 kb on - strand, within MPMX19_02805at 40.907 kb on - strand, within MPMX19_02805at 40.907 kb on - strand, within MPMX19_02805at 40.909 kb on + strand, within MPMX19_02805at 40.910 kb on - strand, within MPMX19_02805at 40.910 kb on - strand, within MPMX19_02805at 40.910 kb on - strand, within MPMX19_02805at 40.910 kb on - strand, within MPMX19_02805at 40.910 kb on - strand, within MPMX19_02805at 40.910 kb on - strand, within MPMX19_02805at 41.103 kb on + strandat 41.103 kb on + strandat 41.103 kb on + strandat 41.103 kb on + strandat 41.103 kb on + strandat 41.104 kb on - strandat 41.104 kb on - strandat 41.104 kb on - strandat 41.104 kb on - strandat 41.104 kb on - strandat 41.104 kb on - strandat 41.104 kb on - strandat 41.104 kb on - strandat 41.104 kb on - strandat 41.104 kb on - strandat 41.104 kb on - strandat 41.104 kb on - strandat 41.143 kb on + strandat 41.143 kb on + strandat 41.154 kb on + strandat 41.154 kb on + strandat 41.162 kb on - strandat 41.233 kb on - strand, within MPMX19_02806at 41.389 kb on - strand, within MPMX19_02806at 41.532 kb on + strand, within MPMX19_02806at 41.532 kb on + strand, within MPMX19_02806at 41.533 kb on - strand, within MPMX19_02806at 41.533 kb on - strand, within MPMX19_02806at 41.778 kb on + strand, within MPMX19_02806at 42.006 kb on + strandat 42.006 kb on + strandat 42.006 kb on + strandat 42.006 kb on + strandat 42.006 kb on + strandat 42.006 kb on + strandat 42.007 kb on - strandat 42.007 kb on - strandat 42.007 kb on - strandat 42.007 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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38,848 + -0.4
39,080 + MPMX19_02804 0.34 -0.4
39,081 - MPMX19_02804 0.34 +1.2
39,081 - MPMX19_02804 0.34 +2.1
39,343 + MPMX19_02804 0.67 -1.3
39,343 + MPMX19_02804 0.67 +0.6
39,344 - MPMX19_02804 0.67 +1.4
39,344 - MPMX19_02804 0.67 +0.9
39,530 + MPMX19_02804 0.90 -0.7
39,531 - MPMX19_02804 0.90 -0.7
39,531 - MPMX19_02804 0.90 +2.3
39,557 + -1.1
39,557 + +1.6
39,566 + -0.4
39,566 + -0.8
39,566 + -0.7
39,566 + +0.8
39,566 + +0.4
39,566 + -0.4
39,566 + +0.2
39,566 + +0.1
39,566 + +0.5
39,566 + +0.8
39,566 + -0.5
39,566 + -0.2
39,566 + -1.1
39,566 + -1.4
39,566 + +0.2
39,566 + -0.4
39,566 + -0.5
39,566 + -0.2
39,567 - -0.4
39,567 - -1.4
39,567 - -0.5
39,567 - -0.4
39,567 - +0.2
39,567 - -0.4
39,567 - +0.2
39,567 - -0.9
39,567 - +0.8
39,567 - -0.5
39,567 - -2.4
39,649 + +1.1
39,649 + +1.4
39,650 - +1.5
39,650 - +0.1
39,997 + MPMX19_02805 0.15 +0.1
39,997 + MPMX19_02805 0.15 -0.2
39,998 - MPMX19_02805 0.15 -1.4
39,998 - MPMX19_02805 0.15 -0.1
40,406 - MPMX19_02805 0.48 +0.6
40,406 - MPMX19_02805 0.48 -0.4
40,816 + MPMX19_02805 0.81 -1.3
40,816 + MPMX19_02805 0.81 -0.2
40,817 - MPMX19_02805 0.81 -0.2
40,906 + MPMX19_02805 0.88 +1.3
40,906 + MPMX19_02805 0.88 +0.4
40,906 + MPMX19_02805 0.88 -0.6
40,906 + MPMX19_02805 0.88 +0.1
40,906 + MPMX19_02805 0.88 -0.4
40,906 + MPMX19_02805 0.88 +0.1
40,906 + MPMX19_02805 0.88 +0.1
40,907 - MPMX19_02805 0.88 -0.7
40,907 - MPMX19_02805 0.88 -0.3
40,907 - MPMX19_02805 0.88 -0.4
40,909 + MPMX19_02805 0.88 +0.6
40,910 - MPMX19_02805 0.88 +0.2
40,910 - MPMX19_02805 0.88 -1.2
40,910 - MPMX19_02805 0.88 +0.4
40,910 - MPMX19_02805 0.88 -1.5
40,910 - MPMX19_02805 0.88 +2.0
40,910 - MPMX19_02805 0.88 -1.3
41,103 + -0.5
41,103 + -1.7
41,103 + -0.9
41,103 + -1.1
41,103 + -1.9
41,104 - -1.7
41,104 - -1.3
41,104 - -0.5
41,104 - -0.5
41,104 - -1.2
41,104 - -0.1
41,104 - +0.6
41,104 - +1.1
41,104 - +0.6
41,104 - -0.5
41,104 - +0.2
41,104 - -0.5
41,143 + -1.1
41,143 + -0.4
41,154 + -0.3
41,154 + -1.5
41,162 - -0.4
41,233 - MPMX19_02806 0.14 -0.1
41,389 - MPMX19_02806 0.30 +2.2
41,532 + MPMX19_02806 0.44 -1.3
41,532 + MPMX19_02806 0.44 -0.5
41,533 - MPMX19_02806 0.44 +0.2
41,533 - MPMX19_02806 0.44 +0.6
41,778 + MPMX19_02806 0.68 -0.9
42,006 + -0.2
42,006 + +0.3
42,006 + +1.6
42,006 + -0.1
42,006 + +0.2
42,006 + -0.3
42,007 - -1.7
42,007 - -1.1
42,007 - -0.4
42,007 - +0.1

Or see this region's nucleotide sequence