Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02773

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02772 and MPMX19_02773 are separated by 187 nucleotidesMPMX19_02773 and MPMX19_02774 are separated by 17 nucleotidesMPMX19_02774 and MPMX19_02775 are separated by 53 nucleotides MPMX19_02772: MPMX19_02772 - N-acetylcysteine deacetylase, at 4,306 to 5,475 _02772 MPMX19_02773: MPMX19_02773 - Gamma-glutamylputrescine oxidoreductase, at 5,663 to 7,006 _02773 MPMX19_02774: MPMX19_02774 - hypothetical protein, at 7,024 to 7,521 _02774 MPMX19_02775: MPMX19_02775 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 7,575 to 8,684 _02775 Position (kb) 5 6 7 8Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4.855 kb on + strand, within MPMX19_02772at 4.856 kb on - strand, within MPMX19_02772at 4.856 kb on - strand, within MPMX19_02772at 4.856 kb on - strand, within MPMX19_02772at 4.911 kb on + strand, within MPMX19_02772at 4.911 kb on + strand, within MPMX19_02772at 5.341 kb on + strand, within MPMX19_02772at 5.342 kb on - strand, within MPMX19_02772at 5.342 kb on - strand, within MPMX19_02772at 5.437 kb on + strandat 5.437 kb on + strandat 5.437 kb on + strandat 5.438 kb on - strandat 5.438 kb on - strandat 5.488 kb on - strandat 5.488 kb on - strandat 5.561 kb on - strandat 5.561 kb on - strandat 5.581 kb on - strandat 5.581 kb on - strandat 5.606 kb on - strandat 6.233 kb on + strand, within MPMX19_02773at 6.234 kb on - strand, within MPMX19_02773at 6.332 kb on + strand, within MPMX19_02773at 6.332 kb on + strand, within MPMX19_02773at 6.332 kb on + strand, within MPMX19_02773at 6.332 kb on + strand, within MPMX19_02773at 6.333 kb on - strand, within MPMX19_02773at 6.333 kb on - strand, within MPMX19_02773at 6.333 kb on - strand, within MPMX19_02773at 6.333 kb on - strand, within MPMX19_02773at 6.333 kb on - strand, within MPMX19_02773at 6.333 kb on - strand, within MPMX19_02773at 6.440 kb on + strand, within MPMX19_02773at 6.440 kb on + strand, within MPMX19_02773at 6.440 kb on + strand, within MPMX19_02773at 6.440 kb on + strand, within MPMX19_02773at 6.441 kb on - strand, within MPMX19_02773at 6.480 kb on + strand, within MPMX19_02773at 6.481 kb on - strand, within MPMX19_02773at 6.596 kb on + strand, within MPMX19_02773at 6.596 kb on + strand, within MPMX19_02773at 6.596 kb on + strand, within MPMX19_02773at 6.596 kb on + strand, within MPMX19_02773at 6.597 kb on - strand, within MPMX19_02773at 6.597 kb on - strand, within MPMX19_02773at 6.597 kb on - strand, within MPMX19_02773at 6.597 kb on - strand, within MPMX19_02773at 6.728 kb on + strand, within MPMX19_02773at 6.728 kb on + strand, within MPMX19_02773at 6.728 kb on + strand, within MPMX19_02773at 6.728 kb on + strand, within MPMX19_02773at 6.728 kb on + strand, within MPMX19_02773at 6.728 kb on + strand, within MPMX19_02773at 6.728 kb on + strand, within MPMX19_02773at 6.728 kb on + strand, within MPMX19_02773at 6.728 kb on + strand, within MPMX19_02773at 6.728 kb on + strand, within MPMX19_02773at 6.729 kb on - strand, within MPMX19_02773at 6.729 kb on - strand, within MPMX19_02773at 6.729 kb on - strand, within MPMX19_02773at 6.729 kb on - strand, within MPMX19_02773at 6.729 kb on - strand, within MPMX19_02773at 6.729 kb on - strand, within MPMX19_02773at 6.764 kb on + strand, within MPMX19_02773at 6.764 kb on + strand, within MPMX19_02773at 6.764 kb on + strand, within MPMX19_02773at 6.764 kb on + strand, within MPMX19_02773at 6.765 kb on - strand, within MPMX19_02773at 6.765 kb on - strand, within MPMX19_02773at 6.977 kb on + strandat 6.978 kb on - strandat 6.978 kb on - strandat 7.042 kb on + strandat 7.043 kb on - strandat 7.066 kb on + strandat 7.066 kb on + strandat 7.067 kb on - strandat 7.067 kb on - strandat 7.087 kb on + strand, within MPMX19_02774at 7.087 kb on + strand, within MPMX19_02774at 7.087 kb on + strand, within MPMX19_02774at 7.087 kb on + strand, within MPMX19_02774at 7.087 kb on + strand, within MPMX19_02774at 7.087 kb on + strand, within MPMX19_02774at 7.087 kb on + strand, within MPMX19_02774at 7.088 kb on - strand, within MPMX19_02774at 7.088 kb on - strand, within MPMX19_02774at 7.088 kb on - strand, within MPMX19_02774at 7.088 kb on - strand, within MPMX19_02774at 7.088 kb on - strand, within MPMX19_02774at 7.520 kb on - strandat 7.545 kb on - strandat 7.545 kb on - strandat 7.557 kb on + strandat 7.557 kb on + strandat 7.557 kb on + strandat 7.557 kb on + strandat 7.557 kb on + strandat 7.557 kb on + strandat 7.557 kb on + strandat 7.557 kb on + strandat 7.557 kb on + strandat 7.557 kb on + strandat 7.557 kb on + strandat 7.557 kb on + strandat 7.558 kb on - strandat 7.558 kb on - strandat 7.558 kb on - strandat 7.558 kb on - strandat 7.558 kb on - strandat 7.558 kb on - strandat 7.558 kb on - strandat 7.558 kb on - strandat 7.558 kb on - strandat 7.558 kb on - strandat 7.558 kb on - strandat 7.696 kb on - strand, within MPMX19_02775at 7.905 kb on + strand, within MPMX19_02775at 7.905 kb on + strand, within MPMX19_02775at 7.905 kb on + strand, within MPMX19_02775at 7.905 kb on + strand, within MPMX19_02775at 7.905 kb on + strand, within MPMX19_02775at 7.905 kb on + strand, within MPMX19_02775at 7.905 kb on + strand, within MPMX19_02775at 7.905 kb on + strand, within MPMX19_02775at 7.905 kb on + strand, within MPMX19_02775at 7.905 kb on + strand, within MPMX19_02775at 7.906 kb on - strand, within MPMX19_02775at 7.906 kb on - strand, within MPMX19_02775at 7.906 kb on - strand, within MPMX19_02775at 7.906 kb on - strand, within MPMX19_02775at 7.906 kb on - strand, within MPMX19_02775at 7.957 kb on - strand, within MPMX19_02775at 7.957 kb on - strand, within MPMX19_02775at 7.957 kb on - strand, within MPMX19_02775at 7.957 kb on - strand, within MPMX19_02775at 7.957 kb on - strand, within MPMX19_02775at 7.957 kb on - strand, within MPMX19_02775at 7.957 kb on - strand, within MPMX19_02775at 7.974 kb on + strand, within MPMX19_02775at 7.974 kb on + strand, within MPMX19_02775at 7.974 kb on + strand, within MPMX19_02775at 7.974 kb on + strand, within MPMX19_02775at 7.974 kb on + strand, within MPMX19_02775at 7.974 kb on + strand, within MPMX19_02775at 7.974 kb on + strand, within MPMX19_02775at 7.974 kb on + strand, within MPMX19_02775at 7.975 kb on - strand, within MPMX19_02775

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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4,855 + MPMX19_02772 0.47 -0.8
4,856 - MPMX19_02772 0.47 +1.3
4,856 - MPMX19_02772 0.47 -0.9
4,856 - MPMX19_02772 0.47 -0.2
4,911 + MPMX19_02772 0.52 +1.6
4,911 + MPMX19_02772 0.52 -0.4
5,341 + MPMX19_02772 0.88 +0.2
5,342 - MPMX19_02772 0.89 -2.5
5,342 - MPMX19_02772 0.89 -0.6
5,437 + -1.2
5,437 + -1.9
5,437 + +1.4
5,438 - +2.2
5,438 - +0.4
5,488 - -0.8
5,488 - -0.1
5,561 - -0.1
5,561 - -0.9
5,581 - +0.6
5,581 - -0.6
5,606 - -1.2
6,233 + MPMX19_02773 0.42 -0.9
6,234 - MPMX19_02773 0.42 -2.1
6,332 + MPMX19_02773 0.50 +0.6
6,332 + MPMX19_02773 0.50 -0.5
6,332 + MPMX19_02773 0.50 +0.2
6,332 + MPMX19_02773 0.50 +0.2
6,333 - MPMX19_02773 0.50 -1.1
6,333 - MPMX19_02773 0.50 -0.4
6,333 - MPMX19_02773 0.50 -0.8
6,333 - MPMX19_02773 0.50 +1.3
6,333 - MPMX19_02773 0.50 -0.2
6,333 - MPMX19_02773 0.50 -0.4
6,440 + MPMX19_02773 0.58 -0.7
6,440 + MPMX19_02773 0.58 -0.2
6,440 + MPMX19_02773 0.58 +0.1
6,440 + MPMX19_02773 0.58 -0.4
6,441 - MPMX19_02773 0.58 +0.0
6,480 + MPMX19_02773 0.61 -0.3
6,481 - MPMX19_02773 0.61 +1.0
6,596 + MPMX19_02773 0.69 -0.1
6,596 + MPMX19_02773 0.69 -0.9
6,596 + MPMX19_02773 0.69 -0.1
6,596 + MPMX19_02773 0.69 -1.3
6,597 - MPMX19_02773 0.69 -1.4
6,597 - MPMX19_02773 0.69 -0.4
6,597 - MPMX19_02773 0.69 +0.3
6,597 - MPMX19_02773 0.69 -1.9
6,728 + MPMX19_02773 0.79 -0.8
6,728 + MPMX19_02773 0.79 -0.4
6,728 + MPMX19_02773 0.79 -0.5
6,728 + MPMX19_02773 0.79 +0.4
6,728 + MPMX19_02773 0.79 -0.6
6,728 + MPMX19_02773 0.79 +0.2
6,728 + MPMX19_02773 0.79 +0.9
6,728 + MPMX19_02773 0.79 -2.4
6,728 + MPMX19_02773 0.79 +2.4
6,728 + MPMX19_02773 0.79 -0.7
6,729 - MPMX19_02773 0.79 +1.3
6,729 - MPMX19_02773 0.79 +1.6
6,729 - MPMX19_02773 0.79 -1.1
6,729 - MPMX19_02773 0.79 +0.1
6,729 - MPMX19_02773 0.79 -1.3
6,729 - MPMX19_02773 0.79 -0.1
6,764 + MPMX19_02773 0.82 +0.3
6,764 + MPMX19_02773 0.82 -0.5
6,764 + MPMX19_02773 0.82 -0.7
6,764 + MPMX19_02773 0.82 -0.4
6,765 - MPMX19_02773 0.82 +0.1
6,765 - MPMX19_02773 0.82 -1.0
6,977 + -0.4
6,978 - -0.9
6,978 - -0.1
7,042 + -0.4
7,043 - -0.4
7,066 + -0.1
7,066 + -0.4
7,067 - -0.5
7,067 - +0.1
7,087 + MPMX19_02774 0.13 -1.5
7,087 + MPMX19_02774 0.13 -0.2
7,087 + MPMX19_02774 0.13 +0.1
7,087 + MPMX19_02774 0.13 +0.1
7,087 + MPMX19_02774 0.13 -1.0
7,087 + MPMX19_02774 0.13 +0.3
7,087 + MPMX19_02774 0.13 -1.2
7,088 - MPMX19_02774 0.13 -0.5
7,088 - MPMX19_02774 0.13 +0.3
7,088 - MPMX19_02774 0.13 -1.1
7,088 - MPMX19_02774 0.13 +0.1
7,088 - MPMX19_02774 0.13 -1.4
7,520 - +0.1
7,545 - -0.9
7,545 - -0.2
7,557 + -0.1
7,557 + +2.1
7,557 + +0.6
7,557 + -0.2
7,557 + +1.1
7,557 + -0.2
7,557 + -1.2
7,557 + -1.6
7,557 + +0.5
7,557 + +0.2
7,557 + -1.1
7,557 + +0.1
7,558 - -2.3
7,558 - +0.1
7,558 - -0.7
7,558 - -1.8
7,558 - +0.3
7,558 - +0.6
7,558 - -0.2
7,558 - -0.4
7,558 - -0.2
7,558 - -1.1
7,558 - -0.5
7,696 - MPMX19_02775 0.11 -0.2
7,905 + MPMX19_02775 0.30 -0.8
7,905 + MPMX19_02775 0.30 -0.0
7,905 + MPMX19_02775 0.30 -0.6
7,905 + MPMX19_02775 0.30 -0.9
7,905 + MPMX19_02775 0.30 +0.1
7,905 + MPMX19_02775 0.30 -0.4
7,905 + MPMX19_02775 0.30 -0.7
7,905 + MPMX19_02775 0.30 -0.4
7,905 + MPMX19_02775 0.30 -0.7
7,905 + MPMX19_02775 0.30 -0.1
7,906 - MPMX19_02775 0.30 +0.9
7,906 - MPMX19_02775 0.30 +0.5
7,906 - MPMX19_02775 0.30 -0.4
7,906 - MPMX19_02775 0.30 +0.6
7,906 - MPMX19_02775 0.30 -0.8
7,957 - MPMX19_02775 0.34 +0.9
7,957 - MPMX19_02775 0.34 -0.5
7,957 - MPMX19_02775 0.34 +0.4
7,957 - MPMX19_02775 0.34 -1.0
7,957 - MPMX19_02775 0.34 -0.9
7,957 - MPMX19_02775 0.34 +0.5
7,957 - MPMX19_02775 0.34 -0.7
7,974 + MPMX19_02775 0.36 -0.6
7,974 + MPMX19_02775 0.36 +0.1
7,974 + MPMX19_02775 0.36 -2.8
7,974 + MPMX19_02775 0.36 -1.8
7,974 + MPMX19_02775 0.36 -0.4
7,974 + MPMX19_02775 0.36 +0.3
7,974 + MPMX19_02775 0.36 -0.4
7,974 + MPMX19_02775 0.36 -2.2
7,975 - MPMX19_02775 0.36 -0.2

Or see this region's nucleotide sequence