Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02738 and MPMX19_02739 are separated by 52 nucleotides MPMX19_02739 and MPMX19_02740 are separated by 164 nucleotides MPMX19_02740 and MPMX19_02741 are separated by 305 nucleotides MPMX19_02741 and MPMX19_02742 are separated by 2 nucleotides
MPMX19_02738: MPMX19_02738 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic, at 2,882,660 to 2,883,706
_02738
MPMX19_02739: MPMX19_02739 - Dihydrofolate synthase/folylpolyglutamate synthase, at 2,883,759 to 2,885,129
_02739
MPMX19_02740: MPMX19_02740 - tRNA-Ala, at 2,885,294 to 2,885,369
_02740
MPMX19_02741: MPMX19_02741 - hypothetical protein, at 2,885,675 to 2,885,959
_02741
MPMX19_02742: MPMX19_02742 - hypothetical protein, at 2,885,962 to 2,886,315
_02742
Position (kb)
2883
2884
2885
2886 Strain fitness (log2 ratio)
-2
-1
0
1 at 2883.714 kb on + strand at 2883.714 kb on + strand at 2885.259 kb on - strand at 2885.517 kb on + strand at 2885.517 kb on + strand at 2885.517 kb on + strand at 2885.517 kb on + strand at 2885.517 kb on + strand at 2885.517 kb on + strand at 2885.517 kb on + strand at 2885.517 kb on + strand at 2885.518 kb on - strand at 2885.518 kb on - strand at 2885.518 kb on - strand at 2885.518 kb on - strand at 2885.518 kb on - strand at 2885.518 kb on - strand at 2885.518 kb on - strand at 2885.518 kb on - strand at 2885.587 kb on + strand at 2885.587 kb on + strand at 2885.593 kb on + strand at 2885.593 kb on + strand at 2885.593 kb on + strand at 2885.593 kb on + strand at 2885.593 kb on + strand at 2885.593 kb on + strand at 2885.593 kb on + strand at 2885.942 kb on + strand at 2885.942 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 2,883,714 + -1.0 2,883,714 + -2.3 2,885,259 - -1.9 2,885,517 + -0.4 2,885,517 + +0.5 2,885,517 + -0.1 2,885,517 + +1.3 2,885,517 + -1.9 2,885,517 + +0.5 2,885,517 + -1.3 2,885,517 + +0.7 2,885,518 - +0.4 2,885,518 - -0.5 2,885,518 - -0.1 2,885,518 - -1.0 2,885,518 - -0.6 2,885,518 - +1.6 2,885,518 - -0.7 2,885,518 - -0.3 2,885,587 + -0.2 2,885,587 + -1.4 2,885,593 + +0.6 2,885,593 + -1.5 2,885,593 + -0.1 2,885,593 + +0.2 2,885,593 + +1.3 2,885,593 + -0.4 2,885,593 + -1.6 2,885,942 + +0.9 2,885,942 + -0.1
Or see this region's nucleotide sequence