Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02640 and MPMX19_02641 are separated by 260 nucleotides MPMX19_02641 and MPMX19_02642 are separated by 118 nucleotides MPMX19_02642 and MPMX19_02643 are separated by 43 nucleotides
MPMX19_02640: MPMX19_02640 - Shikimate kinase, at 2,757,485 to 2,758,309
_02640
MPMX19_02641: MPMX19_02641 - hypothetical protein, at 2,758,570 to 2,758,710
_02641
MPMX19_02642: MPMX19_02642 - hypothetical protein, at 2,758,829 to 2,760,634
_02642
MPMX19_02643: MPMX19_02643 - Tyrosine recombinase XerD, at 2,760,678 to 2,761,700
_02643
Position (kb)
2758
2759
2760
2761 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2758.310 kb on - strand at 2758.427 kb on + strand at 2758.427 kb on + strand at 2758.427 kb on + strand at 2758.427 kb on + strand at 2758.427 kb on + strand at 2758.427 kb on + strand at 2758.427 kb on + strand at 2758.427 kb on + strand at 2758.427 kb on + strand at 2758.427 kb on + strand at 2758.428 kb on - strand at 2758.428 kb on - strand at 2758.428 kb on - strand at 2758.472 kb on + strand at 2758.472 kb on + strand at 2758.472 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.749 kb on + strand at 2758.749 kb on + strand at 2758.749 kb on + strand at 2758.749 kb on + strand at 2758.749 kb on + strand at 2758.749 kb on + strand at 2758.749 kb on + strand at 2758.749 kb on + strand at 2758.750 kb on - strand at 2758.750 kb on - strand at 2758.750 kb on - strand at 2758.750 kb on - strand at 2759.429 kb on + strand, within MPMX19_02642 at 2759.429 kb on + strand, within MPMX19_02642 at 2759.429 kb on + strand, within MPMX19_02642 at 2759.429 kb on + strand, within MPMX19_02642 at 2759.429 kb on + strand, within MPMX19_02642 at 2759.429 kb on + strand, within MPMX19_02642 at 2759.429 kb on + strand, within MPMX19_02642 at 2759.429 kb on + strand, within MPMX19_02642 at 2759.429 kb on + strand, within MPMX19_02642 at 2759.430 kb on - strand, within MPMX19_02642 at 2759.430 kb on - strand, within MPMX19_02642 at 2759.801 kb on + strand, within MPMX19_02642 at 2759.801 kb on + strand, within MPMX19_02642 at 2759.801 kb on + strand, within MPMX19_02642 at 2759.801 kb on + strand, within MPMX19_02642 at 2759.801 kb on + strand, within MPMX19_02642 at 2759.801 kb on + strand, within MPMX19_02642 at 2759.801 kb on + strand, within MPMX19_02642 at 2759.802 kb on - strand, within MPMX19_02642 at 2759.802 kb on - strand, within MPMX19_02642 at 2759.802 kb on - strand, within MPMX19_02642 at 2760.071 kb on + strand, within MPMX19_02642 at 2760.071 kb on + strand, within MPMX19_02642 at 2760.071 kb on + strand, within MPMX19_02642 at 2760.071 kb on + strand, within MPMX19_02642 at 2760.071 kb on + strand, within MPMX19_02642 at 2760.072 kb on - strand, within MPMX19_02642 at 2760.074 kb on + strand, within MPMX19_02642 at 2760.074 kb on + strand, within MPMX19_02642 at 2760.074 kb on + strand, within MPMX19_02642 at 2760.074 kb on + strand, within MPMX19_02642 at 2760.074 kb on + strand, within MPMX19_02642 at 2760.075 kb on - strand, within MPMX19_02642 at 2760.075 kb on - strand, within MPMX19_02642 at 2760.075 kb on - strand, within MPMX19_02642 at 2760.831 kb on + strand, within MPMX19_02643 at 2761.609 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 2,758,310 - -0.5 2,758,427 + +0.2 2,758,427 + -0.4 2,758,427 + -1.3 2,758,427 + -0.6 2,758,427 + +0.6 2,758,427 + +0.2 2,758,427 + -0.8 2,758,427 + -0.3 2,758,427 + -2.8 2,758,427 + +0.0 2,758,428 - -0.8 2,758,428 - +1.8 2,758,428 - -0.5 2,758,472 + +0.0 2,758,472 + -0.1 2,758,472 + -1.8 2,758,521 + -0.1 2,758,521 + -0.3 2,758,521 + -0.2 2,758,521 + +0.7 2,758,521 + +0.0 2,758,521 + -0.3 2,758,521 + -1.5 2,758,521 + -2.1 2,758,521 + +0.1 2,758,521 + -1.8 2,758,521 + +0.0 2,758,521 + +0.1 2,758,521 + -1.3 2,758,521 + +0.5 2,758,521 + -0.7 2,758,521 + -0.6 2,758,521 + -0.1 2,758,521 + -1.6 2,758,521 + -1.6 2,758,521 + +0.1 2,758,521 + +1.2 2,758,521 + -1.1 2,758,521 + -0.5 2,758,521 + +0.4 2,758,521 + +0.0 2,758,521 + -0.7 2,758,521 + +0.2 2,758,749 + +0.4 2,758,749 + -0.8 2,758,749 + -0.3 2,758,749 + +0.0 2,758,749 + -0.6 2,758,749 + -1.1 2,758,749 + +0.8 2,758,749 + -2.3 2,758,750 - -0.8 2,758,750 - +1.1 2,758,750 - -0.8 2,758,750 - +1.4 2,759,429 + MPMX19_02642 0.33 -0.8 2,759,429 + MPMX19_02642 0.33 +0.8 2,759,429 + MPMX19_02642 0.33 -0.8 2,759,429 + MPMX19_02642 0.33 +0.1 2,759,429 + MPMX19_02642 0.33 -0.5 2,759,429 + MPMX19_02642 0.33 +0.6 2,759,429 + MPMX19_02642 0.33 -0.5 2,759,429 + MPMX19_02642 0.33 -0.0 2,759,429 + MPMX19_02642 0.33 -0.1 2,759,430 - MPMX19_02642 0.33 -0.8 2,759,430 - MPMX19_02642 0.33 +0.2 2,759,801 + MPMX19_02642 0.54 -2.6 2,759,801 + MPMX19_02642 0.54 -0.3 2,759,801 + MPMX19_02642 0.54 -1.1 2,759,801 + MPMX19_02642 0.54 +0.2 2,759,801 + MPMX19_02642 0.54 +0.6 2,759,801 + MPMX19_02642 0.54 -0.7 2,759,801 + MPMX19_02642 0.54 +0.4 2,759,802 - MPMX19_02642 0.54 +0.0 2,759,802 - MPMX19_02642 0.54 -0.1 2,759,802 - MPMX19_02642 0.54 +0.4 2,760,071 + MPMX19_02642 0.69 -0.2 2,760,071 + MPMX19_02642 0.69 -2.5 2,760,071 + MPMX19_02642 0.69 +0.8 2,760,071 + MPMX19_02642 0.69 +0.4 2,760,071 + MPMX19_02642 0.69 -1.1 2,760,072 - MPMX19_02642 0.69 -0.5 2,760,074 + MPMX19_02642 0.69 -0.9 2,760,074 + MPMX19_02642 0.69 +0.0 2,760,074 + MPMX19_02642 0.69 -0.2 2,760,074 + MPMX19_02642 0.69 -1.5 2,760,074 + MPMX19_02642 0.69 -0.9 2,760,075 - MPMX19_02642 0.69 -0.6 2,760,075 - MPMX19_02642 0.69 +0.1 2,760,075 - MPMX19_02642 0.69 -1.2 2,760,831 + MPMX19_02643 0.15 +0.1 2,761,609 - -0.2
Or see this region's nucleotide sequence