Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02598 and MPMX19_02599 are separated by 634 nucleotides MPMX19_02599 and MPMX19_02600 are separated by 112 nucleotides MPMX19_02600 and MPMX19_02601 are separated by 178 nucleotides
MPMX19_02598: MPMX19_02598 - Chaperone protein DnaK, at 2,716,571 to 2,718,487
_02598
MPMX19_02599: MPMX19_02599 - hypothetical protein, at 2,719,122 to 2,719,325
_02599
MPMX19_02600: MPMX19_02600 - hypothetical protein, at 2,719,438 to 2,719,968
_02600
MPMX19_02601: MPMX19_02601 - hypothetical protein, at 2,720,147 to 2,721,199
_02601
Position (kb)
2719
2720 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2718.554 kb on - strand at 2718.651 kb on - strand at 2718.651 kb on - strand at 2718.651 kb on - strand at 2718.651 kb on - strand at 2718.651 kb on - strand at 2718.651 kb on - strand at 2718.651 kb on - strand at 2718.651 kb on - strand at 2718.651 kb on - strand at 2718.651 kb on - strand at 2718.651 kb on - strand at 2718.651 kb on - strand at 2718.651 kb on - strand at 2718.651 kb on - strand at 2718.651 kb on - strand at 2718.653 kb on - strand at 2718.653 kb on - strand at 2718.653 kb on - strand at 2718.653 kb on - strand at 2718.653 kb on - strand at 2718.653 kb on - strand at 2718.653 kb on - strand at 2718.653 kb on - strand at 2718.653 kb on - strand at 2718.653 kb on - strand at 2718.653 kb on - strand at 2718.770 kb on + strand at 2718.791 kb on + strand at 2718.791 kb on + strand at 2718.848 kb on + strand at 2718.866 kb on - strand at 2718.878 kb on - strand at 2718.890 kb on + strand at 2718.949 kb on - strand at 2718.955 kb on - strand at 2718.974 kb on + strand at 2718.998 kb on - strand at 2719.003 kb on - strand at 2719.355 kb on + strand at 2719.355 kb on + strand at 2719.355 kb on + strand at 2719.355 kb on + strand at 2719.355 kb on + strand at 2719.355 kb on + strand at 2719.355 kb on + strand at 2719.355 kb on + strand at 2719.355 kb on + strand at 2719.355 kb on + strand at 2719.356 kb on - strand at 2719.356 kb on - strand at 2719.356 kb on - strand at 2719.356 kb on - strand at 2719.356 kb on - strand at 2719.356 kb on - strand at 2719.356 kb on - strand at 2719.371 kb on - strand at 2719.371 kb on - strand at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.598 kb on + strand, within MPMX19_02600 at 2719.599 kb on - strand, within MPMX19_02600 at 2719.599 kb on - strand, within MPMX19_02600 at 2719.599 kb on - strand, within MPMX19_02600 at 2719.599 kb on - strand, within MPMX19_02600 at 2719.599 kb on - strand, within MPMX19_02600 at 2719.599 kb on - strand, within MPMX19_02600 at 2719.599 kb on - strand, within MPMX19_02600 at 2719.599 kb on - strand, within MPMX19_02600 at 2719.599 kb on - strand, within MPMX19_02600 at 2719.599 kb on - strand, within MPMX19_02600 at 2719.599 kb on - strand, within MPMX19_02600 at 2719.599 kb on - strand, within MPMX19_02600 at 2719.599 kb on - strand, within MPMX19_02600 at 2719.599 kb on - strand, within MPMX19_02600 at 2719.599 kb on - strand, within MPMX19_02600 at 2719.599 kb on - strand, within MPMX19_02600 at 2719.599 kb on - strand, within MPMX19_02600 at 2719.599 kb on - strand, within MPMX19_02600 at 2719.599 kb on - strand, within MPMX19_02600 at 2719.599 kb on - strand, within MPMX19_02600 at 2719.599 kb on - strand, within MPMX19_02600 at 2719.599 kb on - strand, within MPMX19_02600 at 2719.952 kb on + strand at 2719.952 kb on + strand at 2719.952 kb on + strand at 2719.952 kb on + strand at 2719.952 kb on + strand at 2719.952 kb on + strand at 2719.952 kb on + strand at 2719.952 kb on + strand at 2719.952 kb on + strand at 2719.952 kb on + strand at 2719.952 kb on + strand at 2719.952 kb on + strand at 2719.952 kb on + strand at 2719.952 kb on + strand at 2719.952 kb on + strand at 2719.952 kb on + strand at 2719.952 kb on + strand at 2719.952 kb on + strand at 2719.952 kb on + strand at 2719.952 kb on + strand at 2719.952 kb on + strand at 2719.952 kb on + strand at 2719.952 kb on + strand at 2719.953 kb on - strand at 2719.953 kb on - strand at 2719.953 kb on - strand at 2719.953 kb on - strand at 2719.953 kb on - strand at 2719.953 kb on - strand at 2719.953 kb on - strand at 2719.953 kb on - strand at 2719.953 kb on - strand at 2719.953 kb on - strand at 2719.953 kb on - strand at 2719.953 kb on - strand at 2719.953 kb on - strand at 2719.953 kb on - strand at 2719.953 kb on - strand at 2719.953 kb on - strand at 2719.953 kb on - strand at 2719.953 kb on - strand at 2719.953 kb on - strand at 2719.953 kb on - strand at 2719.953 kb on - strand at 2719.953 kb on - strand at 2719.953 kb on - strand at 2719.953 kb on - strand at 2719.953 kb on - strand at 2720.059 kb on + strand at 2720.059 kb on + strand at 2720.059 kb on + strand at 2720.059 kb on + strand at 2720.059 kb on + strand at 2720.059 kb on + strand at 2720.059 kb on + strand at 2720.059 kb on + strand at 2720.059 kb on + strand at 2720.059 kb on + strand at 2720.059 kb on + strand at 2720.059 kb on + strand at 2720.059 kb on + strand at 2720.060 kb on - strand at 2720.060 kb on - strand at 2720.060 kb on - strand at 2720.060 kb on - strand at 2720.060 kb on - strand at 2720.060 kb on - strand at 2720.060 kb on - strand at 2720.060 kb on - strand at 2720.060 kb on - strand at 2720.060 kb on - strand at 2720.060 kb on - strand at 2720.060 kb on - strand at 2720.060 kb on - strand at 2720.060 kb on - strand at 2720.060 kb on - strand at 2720.060 kb on - strand at 2720.060 kb on - strand at 2720.060 kb on - strand at 2720.060 kb on - strand at 2720.120 kb on + strand at 2720.120 kb on + strand at 2720.121 kb on - strand at 2720.121 kb on - strand at 2720.121 kb on - strand at 2720.121 kb on - strand at 2720.149 kb on - strand at 2720.149 kb on - strand at 2720.149 kb on - strand at 2720.149 kb on - strand at 2720.466 kb on + strand, within MPMX19_02601 at 2720.466 kb on + strand, within MPMX19_02601 at 2720.466 kb on + strand, within MPMX19_02601 at 2720.466 kb on + strand, within MPMX19_02601 at 2720.466 kb on + strand, within MPMX19_02601 at 2720.466 kb on + strand, within MPMX19_02601 at 2720.466 kb on + strand, within MPMX19_02601 at 2720.466 kb on + strand, within MPMX19_02601 at 2720.466 kb on + strand, within MPMX19_02601 at 2720.467 kb on - strand, within MPMX19_02601 at 2720.467 kb on - strand, within MPMX19_02601 at 2720.467 kb on - strand, within MPMX19_02601 at 2720.467 kb on - strand, within MPMX19_02601 at 2720.592 kb on + strand, within MPMX19_02601 at 2720.592 kb on + strand, within MPMX19_02601 at 2720.592 kb on + strand, within MPMX19_02601 at 2720.593 kb on - strand, within MPMX19_02601 at 2720.608 kb on - strand, within MPMX19_02601
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 2,718,554 - -0.2 2,718,651 - -0.4 2,718,651 - -0.5 2,718,651 - +0.5 2,718,651 - -0.9 2,718,651 - -1.3 2,718,651 - -0.2 2,718,651 - -2.6 2,718,651 - +1.2 2,718,651 - +0.2 2,718,651 - -0.8 2,718,651 - -1.0 2,718,651 - -2.3 2,718,651 - -2.2 2,718,651 - -1.0 2,718,651 - -0.1 2,718,653 - +0.7 2,718,653 - -1.6 2,718,653 - -0.3 2,718,653 - -1.9 2,718,653 - -1.8 2,718,653 - -0.8 2,718,653 - +0.5 2,718,653 - +0.4 2,718,653 - -1.9 2,718,653 - -1.5 2,718,653 - +1.7 2,718,770 + -0.9 2,718,791 + -1.0 2,718,791 + +1.1 2,718,848 + -1.3 2,718,866 - +0.5 2,718,878 - -1.5 2,718,890 + -0.0 2,718,949 - -0.8 2,718,955 - -0.5 2,718,974 + +1.0 2,718,998 - +1.2 2,719,003 - -0.6 2,719,355 + -0.5 2,719,355 + -0.8 2,719,355 + +0.8 2,719,355 + -1.6 2,719,355 + -1.2 2,719,355 + -0.2 2,719,355 + -1.8 2,719,355 + +0.4 2,719,355 + -1.0 2,719,355 + +0.2 2,719,356 - -1.2 2,719,356 - -0.4 2,719,356 - +2.6 2,719,356 - -0.8 2,719,356 - -0.3 2,719,356 - -0.4 2,719,356 - -1.8 2,719,371 - -0.9 2,719,371 - +0.2 2,719,598 + MPMX19_02600 0.30 -1.0 2,719,598 + MPMX19_02600 0.30 +0.8 2,719,598 + MPMX19_02600 0.30 +1.1 2,719,598 + MPMX19_02600 0.30 +0.8 2,719,598 + MPMX19_02600 0.30 +1.1 2,719,598 + MPMX19_02600 0.30 +0.6 2,719,598 + MPMX19_02600 0.30 +1.8 2,719,598 + MPMX19_02600 0.30 -1.6 2,719,598 + MPMX19_02600 0.30 -0.2 2,719,598 + MPMX19_02600 0.30 -0.9 2,719,598 + MPMX19_02600 0.30 +0.0 2,719,598 + MPMX19_02600 0.30 +0.5 2,719,598 + MPMX19_02600 0.30 +0.2 2,719,598 + MPMX19_02600 0.30 -0.8 2,719,598 + MPMX19_02600 0.30 -0.2 2,719,598 + MPMX19_02600 0.30 -0.3 2,719,598 + MPMX19_02600 0.30 -1.6 2,719,598 + MPMX19_02600 0.30 -0.3 2,719,598 + MPMX19_02600 0.30 +0.8 2,719,598 + MPMX19_02600 0.30 -0.2 2,719,598 + MPMX19_02600 0.30 +0.4 2,719,598 + MPMX19_02600 0.30 -0.7 2,719,598 + MPMX19_02600 0.30 -0.3 2,719,598 + MPMX19_02600 0.30 -0.5 2,719,598 + MPMX19_02600 0.30 -0.3 2,719,598 + MPMX19_02600 0.30 -0.8 2,719,598 + MPMX19_02600 0.30 -0.1 2,719,598 + MPMX19_02600 0.30 -1.2 2,719,598 + MPMX19_02600 0.30 -1.4 2,719,598 + MPMX19_02600 0.30 -0.8 2,719,598 + MPMX19_02600 0.30 +0.8 2,719,598 + MPMX19_02600 0.30 +0.2 2,719,598 + MPMX19_02600 0.30 -1.2 2,719,598 + MPMX19_02600 0.30 -0.7 2,719,598 + MPMX19_02600 0.30 +0.3 2,719,598 + MPMX19_02600 0.30 -1.2 2,719,598 + MPMX19_02600 0.30 +0.6 2,719,598 + MPMX19_02600 0.30 +1.2 2,719,598 + MPMX19_02600 0.30 -1.2 2,719,599 - MPMX19_02600 0.30 +0.8 2,719,599 - MPMX19_02600 0.30 +0.8 2,719,599 - MPMX19_02600 0.30 -0.1 2,719,599 - MPMX19_02600 0.30 +1.1 2,719,599 - MPMX19_02600 0.30 +0.5 2,719,599 - MPMX19_02600 0.30 +0.1 2,719,599 - MPMX19_02600 0.30 -2.6 2,719,599 - MPMX19_02600 0.30 -1.0 2,719,599 - MPMX19_02600 0.30 +0.6 2,719,599 - MPMX19_02600 0.30 +1.2 2,719,599 - MPMX19_02600 0.30 +1.0 2,719,599 - MPMX19_02600 0.30 -0.6 2,719,599 - MPMX19_02600 0.30 -0.3 2,719,599 - MPMX19_02600 0.30 +1.4 2,719,599 - MPMX19_02600 0.30 +0.8 2,719,599 - MPMX19_02600 0.30 -0.4 2,719,599 - MPMX19_02600 0.30 -1.5 2,719,599 - MPMX19_02600 0.30 +0.4 2,719,599 - MPMX19_02600 0.30 -0.3 2,719,599 - MPMX19_02600 0.30 +0.4 2,719,599 - MPMX19_02600 0.30 +0.0 2,719,599 - MPMX19_02600 0.30 -0.2 2,719,952 + +0.2 2,719,952 + -1.8 2,719,952 + -0.8 2,719,952 + -0.1 2,719,952 + -1.6 2,719,952 + -1.0 2,719,952 + -1.3 2,719,952 + -0.1 2,719,952 + +0.3 2,719,952 + -0.1 2,719,952 + -1.7 2,719,952 + -0.8 2,719,952 + -0.1 2,719,952 + -0.7 2,719,952 + -2.8 2,719,952 + -0.2 2,719,952 + +0.1 2,719,952 + -0.5 2,719,952 + -1.1 2,719,952 + -1.0 2,719,952 + -0.6 2,719,952 + -0.1 2,719,952 + -0.6 2,719,953 - +0.8 2,719,953 - -0.3 2,719,953 - -1.5 2,719,953 - -0.3 2,719,953 - -1.2 2,719,953 - +0.8 2,719,953 - -2.0 2,719,953 - -0.2 2,719,953 - +0.0 2,719,953 - +0.2 2,719,953 - -1.8 2,719,953 - -0.1 2,719,953 - -0.3 2,719,953 - +0.9 2,719,953 - -0.8 2,719,953 - -1.6 2,719,953 - +0.7 2,719,953 - +0.1 2,719,953 - +0.8 2,719,953 - +0.0 2,719,953 - +0.5 2,719,953 - -0.2 2,719,953 - -1.2 2,719,953 - +0.5 2,719,953 - -0.8 2,720,059 + -0.7 2,720,059 + -2.6 2,720,059 + -0.6 2,720,059 + +0.8 2,720,059 + -1.0 2,720,059 + -1.2 2,720,059 + +0.4 2,720,059 + +0.4 2,720,059 + -0.7 2,720,059 + -0.2 2,720,059 + -2.3 2,720,059 + -1.9 2,720,059 + +0.5 2,720,060 - -2.4 2,720,060 - +0.6 2,720,060 - -1.2 2,720,060 - +0.0 2,720,060 - +1.8 2,720,060 - -1.1 2,720,060 - -0.6 2,720,060 - -0.0 2,720,060 - +0.5 2,720,060 - +0.3 2,720,060 - -0.8 2,720,060 - -1.0 2,720,060 - -0.9 2,720,060 - +1.0 2,720,060 - +1.2 2,720,060 - +0.3 2,720,060 - -0.5 2,720,060 - -1.3 2,720,060 - -1.0 2,720,120 + -0.6 2,720,120 + -0.2 2,720,121 - -0.6 2,720,121 - -1.2 2,720,121 - +1.5 2,720,121 - -1.7 2,720,149 - +0.5 2,720,149 - +0.9 2,720,149 - +0.3 2,720,149 - -0.5 2,720,466 + MPMX19_02601 0.30 -0.4 2,720,466 + MPMX19_02601 0.30 -1.6 2,720,466 + MPMX19_02601 0.30 -0.8 2,720,466 + MPMX19_02601 0.30 -1.0 2,720,466 + MPMX19_02601 0.30 +0.4 2,720,466 + MPMX19_02601 0.30 +0.2 2,720,466 + MPMX19_02601 0.30 -0.6 2,720,466 + MPMX19_02601 0.30 -0.2 2,720,466 + MPMX19_02601 0.30 -1.3 2,720,467 - MPMX19_02601 0.30 +0.1 2,720,467 - MPMX19_02601 0.30 -0.8 2,720,467 - MPMX19_02601 0.30 +0.3 2,720,467 - MPMX19_02601 0.30 -0.5 2,720,592 + MPMX19_02601 0.42 -0.2 2,720,592 + MPMX19_02601 0.42 -0.8 2,720,592 + MPMX19_02601 0.42 -1.9 2,720,593 - MPMX19_02601 0.42 -0.2 2,720,608 - MPMX19_02601 0.44 -0.6
Or see this region's nucleotide sequence