Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02404 and MPMX19_02405 are separated by 89 nucleotides MPMX19_02405 and MPMX19_02406 are separated by 89 nucleotides MPMX19_02406 and MPMX19_02407 are separated by 226 nucleotides MPMX19_02407 and MPMX19_02408 are separated by 66 nucleotides
MPMX19_02404: MPMX19_02404 - LexA repressor, at 2,526,372 to 2,527,004
_02404
MPMX19_02405: MPMX19_02405 - hypothetical protein, at 2,527,094 to 2,527,387
_02405
MPMX19_02406: MPMX19_02406 - Branched-chain-amino-acid aminotransferase, at 2,527,477 to 2,528,325
_02406
MPMX19_02407: MPMX19_02407 - hypothetical protein, at 2,528,552 to 2,528,761
_02407
MPMX19_02408: MPMX19_02408 - Succinate dehydrogenase iron-sulfur subunit, at 2,528,828 to 2,529,604
_02408
Position (kb)
2527
2528
2529 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2526.642 kb on + strand, within MPMX19_02404 at 2526.643 kb on - strand, within MPMX19_02404 at 2526.667 kb on - strand, within MPMX19_02404 at 2526.744 kb on + strand, within MPMX19_02404 at 2526.744 kb on + strand, within MPMX19_02404 at 2526.744 kb on + strand, within MPMX19_02404 at 2526.744 kb on + strand, within MPMX19_02404 at 2526.744 kb on + strand, within MPMX19_02404 at 2526.745 kb on - strand, within MPMX19_02404 at 2526.745 kb on - strand, within MPMX19_02404 at 2526.745 kb on - strand, within MPMX19_02404 at 2526.745 kb on - strand, within MPMX19_02404 at 2526.745 kb on - strand, within MPMX19_02404 at 2526.745 kb on - strand, within MPMX19_02404 at 2526.783 kb on + strand, within MPMX19_02404 at 2527.059 kb on + strand at 2527.060 kb on - strand at 2527.060 kb on - strand at 2527.251 kb on + strand, within MPMX19_02405 at 2527.251 kb on + strand, within MPMX19_02405 at 2527.251 kb on + strand, within MPMX19_02405 at 2527.252 kb on - strand, within MPMX19_02405 at 2527.252 kb on - strand, within MPMX19_02405 at 2527.252 kb on - strand, within MPMX19_02405 at 2527.252 kb on - strand, within MPMX19_02405 at 2527.252 kb on - strand, within MPMX19_02405 at 2527.252 kb on - strand, within MPMX19_02405 at 2527.252 kb on - strand, within MPMX19_02405 at 2527.429 kb on + strand at 2527.429 kb on + strand at 2527.429 kb on + strand at 2527.429 kb on + strand at 2527.429 kb on + strand at 2527.429 kb on + strand at 2527.429 kb on + strand at 2527.429 kb on + strand at 2527.429 kb on + strand at 2527.457 kb on + strand at 2527.457 kb on + strand at 2527.458 kb on - strand at 2527.458 kb on - strand at 2527.458 kb on - strand at 2527.471 kb on + strand at 2527.473 kb on + strand at 2527.473 kb on + strand at 2527.473 kb on + strand at 2527.473 kb on + strand at 2527.473 kb on + strand at 2527.473 kb on + strand at 2527.490 kb on + strand at 2527.490 kb on + strand at 2527.490 kb on + strand at 2527.491 kb on - strand at 2527.491 kb on - strand at 2527.491 kb on - strand at 2527.499 kb on + strand at 2527.499 kb on + strand at 2527.499 kb on + strand at 2527.499 kb on + strand at 2527.500 kb on - strand at 2527.500 kb on - strand at 2527.746 kb on + strand, within MPMX19_02406 at 2527.747 kb on - strand, within MPMX19_02406 at 2527.747 kb on - strand, within MPMX19_02406 at 2527.862 kb on + strand, within MPMX19_02406 at 2527.863 kb on - strand, within MPMX19_02406 at 2527.924 kb on + strand, within MPMX19_02406 at 2527.924 kb on + strand, within MPMX19_02406 at 2527.924 kb on + strand, within MPMX19_02406 at 2527.924 kb on + strand, within MPMX19_02406 at 2527.924 kb on + strand, within MPMX19_02406 at 2527.925 kb on - strand, within MPMX19_02406 at 2527.925 kb on - strand, within MPMX19_02406 at 2527.925 kb on - strand, within MPMX19_02406 at 2527.925 kb on - strand, within MPMX19_02406 at 2527.925 kb on - strand, within MPMX19_02406 at 2527.925 kb on - strand, within MPMX19_02406 at 2527.967 kb on + strand, within MPMX19_02406 at 2527.967 kb on + strand, within MPMX19_02406 at 2527.967 kb on + strand, within MPMX19_02406 at 2527.967 kb on + strand, within MPMX19_02406 at 2527.968 kb on - strand, within MPMX19_02406 at 2527.968 kb on - strand, within MPMX19_02406 at 2527.968 kb on - strand, within MPMX19_02406 at 2527.968 kb on - strand, within MPMX19_02406 at 2528.027 kb on + strand, within MPMX19_02406 at 2528.027 kb on + strand, within MPMX19_02406 at 2528.027 kb on + strand, within MPMX19_02406 at 2528.027 kb on + strand, within MPMX19_02406 at 2528.027 kb on + strand, within MPMX19_02406 at 2528.027 kb on + strand, within MPMX19_02406 at 2528.027 kb on + strand, within MPMX19_02406 at 2528.027 kb on + strand, within MPMX19_02406 at 2528.028 kb on - strand, within MPMX19_02406 at 2528.028 kb on - strand, within MPMX19_02406 at 2528.045 kb on + strand, within MPMX19_02406 at 2528.045 kb on + strand, within MPMX19_02406 at 2528.045 kb on + strand, within MPMX19_02406 at 2528.045 kb on + strand, within MPMX19_02406 at 2528.045 kb on + strand, within MPMX19_02406 at 2528.045 kb on + strand, within MPMX19_02406 at 2528.045 kb on + strand, within MPMX19_02406 at 2528.045 kb on + strand, within MPMX19_02406 at 2528.045 kb on + strand, within MPMX19_02406 at 2528.045 kb on + strand, within MPMX19_02406 at 2528.045 kb on + strand, within MPMX19_02406 at 2528.045 kb on + strand, within MPMX19_02406 at 2528.045 kb on + strand, within MPMX19_02406 at 2528.045 kb on + strand, within MPMX19_02406 at 2528.045 kb on + strand, within MPMX19_02406 at 2528.046 kb on - strand, within MPMX19_02406 at 2528.046 kb on - strand, within MPMX19_02406 at 2528.046 kb on - strand, within MPMX19_02406 at 2528.046 kb on - strand, within MPMX19_02406 at 2528.046 kb on - strand, within MPMX19_02406 at 2528.046 kb on - strand, within MPMX19_02406 at 2528.046 kb on - strand, within MPMX19_02406 at 2528.046 kb on - strand, within MPMX19_02406 at 2528.046 kb on - strand, within MPMX19_02406 at 2528.046 kb on - strand, within MPMX19_02406 at 2528.046 kb on - strand, within MPMX19_02406 at 2528.046 kb on - strand, within MPMX19_02406 at 2528.046 kb on - strand, within MPMX19_02406 at 2528.046 kb on - strand, within MPMX19_02406 at 2528.046 kb on - strand, within MPMX19_02406 at 2528.046 kb on - strand, within MPMX19_02406 at 2528.046 kb on - strand, within MPMX19_02406 at 2528.046 kb on - strand, within MPMX19_02406 at 2528.046 kb on - strand, within MPMX19_02406 at 2528.046 kb on - strand, within MPMX19_02406 at 2528.046 kb on - strand, within MPMX19_02406 at 2528.046 kb on - strand, within MPMX19_02406 at 2528.046 kb on - strand, within MPMX19_02406 at 2528.342 kb on + strand at 2528.342 kb on + strand at 2528.342 kb on + strand at 2528.342 kb on + strand at 2528.342 kb on + strand at 2528.343 kb on - strand at 2528.343 kb on - strand at 2528.343 kb on - strand at 2528.356 kb on - strand at 2528.356 kb on - strand at 2528.424 kb on + strand at 2528.424 kb on + strand at 2528.424 kb on + strand at 2528.424 kb on + strand at 2528.424 kb on + strand at 2528.425 kb on - strand at 2528.425 kb on - strand at 2528.425 kb on - strand at 2528.505 kb on - strand at 2528.546 kb on + strand at 2528.546 kb on + strand at 2528.546 kb on + strand at 2528.546 kb on + strand at 2528.546 kb on + strand at 2528.546 kb on + strand at 2528.546 kb on + strand at 2528.546 kb on + strand at 2528.546 kb on + strand at 2528.546 kb on + strand at 2528.546 kb on + strand at 2528.546 kb on + strand at 2528.546 kb on + strand at 2528.546 kb on + strand at 2528.547 kb on - strand at 2528.547 kb on - strand at 2528.547 kb on - strand at 2528.547 kb on - strand at 2528.547 kb on - strand at 2528.547 kb on - strand at 2528.547 kb on - strand at 2528.547 kb on - strand at 2528.547 kb on - strand at 2528.547 kb on - strand at 2528.547 kb on - strand at 2528.547 kb on - strand at 2528.547 kb on - strand at 2528.547 kb on - strand at 2528.547 kb on - strand at 2528.759 kb on + strand at 2528.819 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 2,526,642 + MPMX19_02404 0.43 -0.8 2,526,643 - MPMX19_02404 0.43 -0.2 2,526,667 - MPMX19_02404 0.47 -1.0 2,526,744 + MPMX19_02404 0.59 -0.6 2,526,744 + MPMX19_02404 0.59 +0.2 2,526,744 + MPMX19_02404 0.59 -0.6 2,526,744 + MPMX19_02404 0.59 -1.4 2,526,744 + MPMX19_02404 0.59 +0.1 2,526,745 - MPMX19_02404 0.59 +0.6 2,526,745 - MPMX19_02404 0.59 +0.1 2,526,745 - MPMX19_02404 0.59 -0.2 2,526,745 - MPMX19_02404 0.59 -0.7 2,526,745 - MPMX19_02404 0.59 +0.4 2,526,745 - MPMX19_02404 0.59 +0.4 2,526,783 + MPMX19_02404 0.65 -1.6 2,527,059 + -0.7 2,527,060 - -0.2 2,527,060 - +0.2 2,527,251 + MPMX19_02405 0.53 -1.9 2,527,251 + MPMX19_02405 0.53 -1.8 2,527,251 + MPMX19_02405 0.53 +0.6 2,527,252 - MPMX19_02405 0.54 -1.1 2,527,252 - MPMX19_02405 0.54 -0.8 2,527,252 - MPMX19_02405 0.54 -1.3 2,527,252 - MPMX19_02405 0.54 +1.2 2,527,252 - MPMX19_02405 0.54 -2.0 2,527,252 - MPMX19_02405 0.54 -0.2 2,527,252 - MPMX19_02405 0.54 -0.9 2,527,429 + +1.4 2,527,429 + +1.6 2,527,429 + -0.6 2,527,429 + +0.8 2,527,429 + +0.1 2,527,429 + +0.1 2,527,429 + +0.2 2,527,429 + +0.8 2,527,429 + -0.6 2,527,457 + +0.4 2,527,457 + -0.8 2,527,458 - +0.8 2,527,458 - -0.1 2,527,458 - -0.8 2,527,471 + -0.4 2,527,473 + -0.8 2,527,473 + -0.5 2,527,473 + -1.4 2,527,473 + -0.4 2,527,473 + -1.5 2,527,473 + -1.0 2,527,490 + -2.4 2,527,490 + -0.8 2,527,490 + -0.2 2,527,491 - -0.0 2,527,491 - -1.0 2,527,491 - -2.0 2,527,499 + -0.4 2,527,499 + -0.2 2,527,499 + +0.7 2,527,499 + -1.4 2,527,500 - -0.2 2,527,500 - -0.3 2,527,746 + MPMX19_02406 0.32 -0.1 2,527,747 - MPMX19_02406 0.32 +0.1 2,527,747 - MPMX19_02406 0.32 -1.0 2,527,862 + MPMX19_02406 0.45 -0.1 2,527,863 - MPMX19_02406 0.45 +0.5 2,527,924 + MPMX19_02406 0.53 +0.2 2,527,924 + MPMX19_02406 0.53 +0.8 2,527,924 + MPMX19_02406 0.53 -1.8 2,527,924 + MPMX19_02406 0.53 +0.2 2,527,924 + MPMX19_02406 0.53 +0.2 2,527,925 - MPMX19_02406 0.53 -0.5 2,527,925 - MPMX19_02406 0.53 -0.0 2,527,925 - MPMX19_02406 0.53 -1.3 2,527,925 - MPMX19_02406 0.53 +0.6 2,527,925 - MPMX19_02406 0.53 -0.2 2,527,925 - MPMX19_02406 0.53 -0.2 2,527,967 + MPMX19_02406 0.58 -0.1 2,527,967 + MPMX19_02406 0.58 -1.6 2,527,967 + MPMX19_02406 0.58 -1.4 2,527,967 + MPMX19_02406 0.58 +0.0 2,527,968 - MPMX19_02406 0.58 +1.2 2,527,968 - MPMX19_02406 0.58 +0.2 2,527,968 - MPMX19_02406 0.58 -1.8 2,527,968 - MPMX19_02406 0.58 +0.4 2,528,027 + MPMX19_02406 0.65 +0.6 2,528,027 + MPMX19_02406 0.65 +0.7 2,528,027 + MPMX19_02406 0.65 -0.2 2,528,027 + MPMX19_02406 0.65 +1.3 2,528,027 + MPMX19_02406 0.65 -0.7 2,528,027 + MPMX19_02406 0.65 -0.1 2,528,027 + MPMX19_02406 0.65 -1.1 2,528,027 + MPMX19_02406 0.65 +0.3 2,528,028 - MPMX19_02406 0.65 +0.1 2,528,028 - MPMX19_02406 0.65 +0.0 2,528,045 + MPMX19_02406 0.67 -1.5 2,528,045 + MPMX19_02406 0.67 +0.9 2,528,045 + MPMX19_02406 0.67 -0.4 2,528,045 + MPMX19_02406 0.67 +0.1 2,528,045 + MPMX19_02406 0.67 -0.5 2,528,045 + MPMX19_02406 0.67 -0.8 2,528,045 + MPMX19_02406 0.67 +0.2 2,528,045 + MPMX19_02406 0.67 -0.5 2,528,045 + MPMX19_02406 0.67 -1.1 2,528,045 + MPMX19_02406 0.67 +0.0 2,528,045 + MPMX19_02406 0.67 -1.2 2,528,045 + MPMX19_02406 0.67 -1.2 2,528,045 + MPMX19_02406 0.67 -0.8 2,528,045 + MPMX19_02406 0.67 -0.7 2,528,045 + MPMX19_02406 0.67 -0.1 2,528,046 - MPMX19_02406 0.67 -1.2 2,528,046 - MPMX19_02406 0.67 -0.5 2,528,046 - MPMX19_02406 0.67 +0.3 2,528,046 - MPMX19_02406 0.67 -1.5 2,528,046 - MPMX19_02406 0.67 -0.2 2,528,046 - MPMX19_02406 0.67 -0.5 2,528,046 - MPMX19_02406 0.67 +0.0 2,528,046 - MPMX19_02406 0.67 +0.2 2,528,046 - MPMX19_02406 0.67 +1.1 2,528,046 - MPMX19_02406 0.67 -0.8 2,528,046 - MPMX19_02406 0.67 +1.8 2,528,046 - MPMX19_02406 0.67 -0.7 2,528,046 - MPMX19_02406 0.67 -0.7 2,528,046 - MPMX19_02406 0.67 +0.5 2,528,046 - MPMX19_02406 0.67 -0.7 2,528,046 - MPMX19_02406 0.67 -1.8 2,528,046 - MPMX19_02406 0.67 -0.7 2,528,046 - MPMX19_02406 0.67 +0.0 2,528,046 - MPMX19_02406 0.67 -0.8 2,528,046 - MPMX19_02406 0.67 -0.1 2,528,046 - MPMX19_02406 0.67 +0.5 2,528,046 - MPMX19_02406 0.67 -0.8 2,528,046 - MPMX19_02406 0.67 -1.5 2,528,342 + -0.4 2,528,342 + -0.5 2,528,342 + +0.3 2,528,342 + -0.5 2,528,342 + -0.8 2,528,343 - +0.4 2,528,343 - -0.5 2,528,343 - -0.2 2,528,356 - -1.7 2,528,356 - -0.5 2,528,424 + -0.3 2,528,424 + -0.8 2,528,424 + -1.4 2,528,424 + -0.2 2,528,424 + +0.8 2,528,425 - -2.7 2,528,425 - +0.2 2,528,425 - -0.0 2,528,505 - -0.8 2,528,546 + +0.4 2,528,546 + -0.2 2,528,546 + -1.3 2,528,546 + +0.4 2,528,546 + +1.0 2,528,546 + -1.9 2,528,546 + +1.0 2,528,546 + +1.2 2,528,546 + -0.5 2,528,546 + +0.0 2,528,546 + -0.2 2,528,546 + -0.3 2,528,546 + -3.2 2,528,546 + +1.4 2,528,547 - -1.2 2,528,547 - -0.8 2,528,547 - -0.7 2,528,547 - -0.7 2,528,547 - -0.5 2,528,547 - +1.1 2,528,547 - -1.2 2,528,547 - -0.8 2,528,547 - -0.8 2,528,547 - +0.0 2,528,547 - +0.2 2,528,547 - -2.4 2,528,547 - +1.2 2,528,547 - -1.1 2,528,547 - -0.2 2,528,759 + -1.1 2,528,819 + +0.6
Or see this region's nucleotide sequence